| mature miRNA: GGCAAGTTGTCCCTGGCTACA species: Nicotiana benthamiana database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|120551151|gb|EH370015.1|EH370015 C01_j001_plate_93 j001 Nicotiana benthamiana cDNA 5', mRNA sequence GGCAAGTTGTCCCTGGCTACA EST sequence (targeted fragment marked with yellow): GCGCGCCTACTCATCATCTCTTTCTATTCCTAACCCCTCAACCTAGAAACTTCGGCGAACTGTTGCAGTGAAGGACGAAGGACGCAAAAAATGTAGTTGTGGCAAAGGACGACTTGCTCCGCTGAAGGACGGCCTACTTCGGTGAAGGTCGACCATTATCTACTAACATACGCAATAGCATGGTGATAAACTAGTCGAGACGTACTGCATAGAAAAACAAGCGACTCAGGTAGGAAAAAGCAACTGCTTCTCACTAAAAAGCGAGAAGCGACCAAGCGAAGCGACCGAAGCGAGCGCTTCTTTGATTTAAACACGTTCTGATAAATATGAATCAAGAAAGACCTTCAAAAGCCAAAAAAAAAAAAAAAGG | |||||||||
gi|120543747|gb|EH363628.1|EH363628 D03_j001_plate_1 j001 Nicotiana benthamiana cDNA 5' similar to Arabidopsis thaliana genomic GGCAAGTTGTCCCTGGCTACA EST sequence (targeted fragment marked with yellow): AAAACTGAATAACAGAAAATTAAATTCTACTTTCTTTGTCGAAGAGAATTTACATGAAGAAATAGAGAGTGGATTGCAGCCAGGGATGACTTGCCGAGTATTTCTTTGTTTTAATTGCCTGTGGTTTACCAGGGATTTTATATCGGCAAGTTGTCCCTGGCTACATTTCTCATGCAAGCCTCTTGAGACCTAATAAGTATTTTTATTTTTTTATTTTTCATCTGACATTCAGCACCCGTATGAAAATTCAAATAAATTCGAATTTGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAGG | |||||||||