| mature miRNA: GGCAAGTTGTTCTTGGCTACA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88426389|gb|CI576631.1|CI576631 CI576631 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone GGCAAGTTGTTCTTGGCTACA EST sequence (targeted fragment marked with yellow): GCGTTTGCCTGATCCGATCCCCTCACCTCCGTCCCTGCTTCCTCCCGGCGACCACCGCCCGCCGCGCGATGGGCGGCGCCGCCGTCTCCAGCCTGCTTGCCACCCCAACACCGACCTCTCGACCTCGACCCGTCTCCACCACCACCGCCCCCTTCTCCGTCAACCTCTCCACCGCAGCTGCCCGCGCACCTCGCCTCCTCCTCCTCTCGCGCCGCCCTCGCCCTCGCCCCGCCGCCGCGGTTCTCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGGAACATCCAGGATGCAAAGTTTTTGGCCAGACCGCAAGCACAGATCACCACAACGAATTGTC | |||||||||
gi|58596045|gb|CK006573.1|CK006573 29997rsicef_8794.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G GGCAAGTTGTTCTTGGCTACA EST sequence (targeted fragment marked with yellow): TGCAGGAATTCGGCACGAGGGGGGAATAAGGCTGTGATTGCGGGCTAGGAAATGACATGAATGGTGATAGCCTTCCATGGGGTGAAAAGGAAGGTGGGGTAGTAACATCAGGACTTGACACAGGCAAAGGACAGCCTTCTATAGTTAAGCCTTGCTTCGCAGCTAGTTTAGAAATCTGTTTCTGGTTTAGCCCTGTTCCATAAATAATGTTCCACAGACTCCTTAGAGATTCCCTCTGGTTATATATTACTTGATCCCTCATAGCCATCTCAATTTGAAGCTCGGCATTAGTCATCCCAAGAAGTCTGTACTGACTGAGAATGTGGAGGTAGGTTCTGTTGCCATTGTTACTGGTGGCTTCCTCGATCATATCTTGGAGTTGACGTTTGCGACTCTCATTCAGTTCAATATCCTTTCTGTAGCCAGCACCAGCTTCATCATTGTCGCGTATGTTGTCAAGAATAACTTGTCTCCGTGATGTTAATGCTTGCAGAACAGCCGAATCCTTATCTTTCACCTGTTGTCTTGCAATTGCATCATCAAGATGCTGGAGCTCCATCC | |||||||||
gi|89171904|gb|CI040414.1|CI040414 CI040414 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c GGCAAGTTGTTCTTGGCTACA EST sequence (targeted fragment marked with yellow): AGAATGACATTGTGAGCAATCATGATAGTATTTGGCAAAGAACAACTTGTCTGACATTAACATGTACCAGAATCGTGTTAGGACATCTATTGAGTATTGACATCTCTAATAATCTACTCCCAGAAATAAATGCATGGATTACAGTCCCAGAGAATTAAGGAAGAATTGAGCATTATACTGCCCTCCATTATCAGAATATGAAACATGTTTAGTTAAATATGACAGATCATAATACAAAAAATCTAGACGGACGATGTCTATATGTCAAGTTCACCTAGAAATGTCTTATATTATTAGACAGACGAGTACTAGTACACTAGTACTTCATTCTACTGATTTACTGACGGCTTGTGCAACTCTGACGTCATCAGTCTGACGAGGTGGGCCACAGGGAGAACGGCAGCGAGACGTCCCTGAAGACGACGGCGAGGCCGACGGCGGCGCTGCCGGCGAACGAGAGGAGCTTCGACTGGTGCACCTGGCCGCAGAAGCGGCCGGCGCCGGCGCCGCAGGCGTTGAT | |||||||||
gi|89190259|gb|CI392309.1|CI392309 CI392309 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J GGCAAGTTGTTCTTGGCTACA EST sequence (targeted fragment marked with yellow): ACAGTGCCAGGCAAATTTAAATGTTTTTTAATAATTTGAGTCTTATGAAACACACATTCTGATCCTGTAGCAGTGTTAAGCAGGGTGAGACTACTCATATTACTGATACTATCTGGCAAGCCATGCATATTATAACAACCAGTAAGATCCAGGACTTGAAGACGAAGGTCACCAAGTGAAGATGGAAGACTTTCAAGACTTACGCAATATGACAAATTAAGATGCTTCAAATTAAACATGTTGCATAATGACCAGGGCAATGACTGTAGCTTAGAACAACTTGTGAGGTTCAAAGACTGGAGCTCAGAGAGATCACCAAAGCATTCAGGGAGTTGTATCAGCCCATGGCAGTCTGAAAGATTAAGGTATTTCAAATGCTTAAGTTGGCAAAAGGTTTTTGGTACCACTTGAACCCTGTAGCAGTCAGACATATCCAAAACCTCAAGTCTA | |||||||||
gi|88421254|gb|CI569099.1|CI569099 CI569099 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone GGCAAGTTGTTCTTGGCTACA EST sequence (targeted fragment marked with yellow): GTCCTGATCCGATCCCCTCACCTCCGTCCCTGCTTCCTCCCGGGGACCACCGCCCGTCGCGCGATGGGCGGCGCCGCCGTCTCCAGCCTGGTTGCCAGCCCAAAACCGAGCTCTCGAACTCGACCCGTCTCCACCACCACCGCCCCCTTCTCCGTCAACCTCTCCATCGGAGCTGCCCGCGCACCTCGCCTCCTCCTCCTCTCGCGCGGCCCTCGCCCTCGCCCCGCCGCCGCGGTTCTCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGGTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGGAACATCCAGGATGCAAAGTTTTTGGCCAGACCGGAAGCACAGATCACCACAACGAATTGTCGAATATTGGCATCATTCCCTCCTTGAAGGGATCCACTTTTCCCTCAGAAGGTTCCCTATGTTATTTTTGTGCTCCCCATCTGGTTG | |||||||||
gi|88394250|gb|CI603439.1|CI603439 CI603439 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone GGCAAGTTGTTCTTGGCTACA EST sequence (targeted fragment marked with yellow): GGCCTGATCCGATCCCCTCACCTCCGTACCTGCTTCCTCCCGGCGACCACCGGCCGCCGAGCGATGGGCGGCGCCGCCGTCTCTAGCCTGCTTGACAACCCAACACCGACCTCTCGAACTCGACCCGTCTCAACCACCAACGCCCCCTTCTCCGTCAACCTCTCCAACGCAGCTGCACGCGCACTCGCCTCCTCTCCTCTCGCGCCGCCCTCGCCCTCGCCCCGCCGCCGCGGTTATCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCTGGCAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGGAACCATAAGGATGAAAAGTTTTTGGCAGACCGCAAGCACAGATCACACAACGAATTGTCGAATATTGGCATAATTCCCTCCTTGAAGGGATCACTTTTCGTCAGA | |||||||||
gi|88434595|gb|CI690871.1|CI690871 CI690871 Oryza sativa (japonica cultivar-group) whole body 3mM SA(salicylic acid) for 1day Or GGCAAGTTGTTCTTGGCTACA EST sequence (targeted fragment marked with yellow): TTGGCCGTTTGCCTGATCCGATCCCCTCACCTCCGTCCCTGCTTCCTCCCGGCGACCACCGCCCGCCGCGCGATGGGCGGCGCCGCCGTCTCCAGCCTGCTTGCCACCCCAACACCGACCTCTCGACCTCGACCCGTCTCCACCACCACCGCCCCCTTCTCCGTCAACCTCTCCACCGCAGCTGCCCGCGCACCTCGCCTCCTCCTCCTCTCGCGCCGCCCTCGCCCTCGCCCCGCCGCCGCGGTTCTCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTC | |||||||||
gi|313080017|gb|HO213337.1|HO213337 FS406 FR13A Submergence VS control suppression subtractive hybridization reverse libraries O GGCAAGTTGTTCTTGGCTACA EST sequence (targeted fragment marked with yellow): ACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGGATTTTGGAACTGCCCTTGTGTTCCCATGCGTGAGAGGAAGGAATGCCATTGCATGCTTTTTCTTACCCCCGACAATGACTTTGCTGGACAAGACCAGGCTATAACCTTGGAGGAGATCAAAGACGCAACATCAAAGATATAACCTCAGTGCACCTTTTCTTCCATTATTCTGCTTGACACCAGAGTTTGTATATGTAGTCTCTGTAAGATGACATTCTACCGATGAAATCGGTCATGATAAGATGTGTAGTAAACAACAATTTGTCGTTCCTTAGCTTTCATGTTCTTGCTTTTGAACATGGGAAAACACGCTCCCACTAATACAACAGCCTATTAACTACGCACTTGATACAAAGCATCATGTTTGTTCATCCTTTGAATCAAAGGTATGATA | |||||||||
gi|29684456|gb|CB680731.1|CB680731 OSJNEf05P19.f OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf05P19 5', mRNA sequence GGCAAGTTGTTCTTGGCTACA EST sequence (targeted fragment marked with yellow): CAACAACATTTACAGAAGTGAAACATATCCATTTGATACACATGAAATTCATTTCGAGGAAGGAGGATGGAAATCGCATTCACAGGGTTATAAGTTGGAGTCTTTAATGAACTTTGAAGCTGCAGGGAAAGGTTCTAATGGTTTGATGTTAGATTCTGATTGGAAATATCATGATGAACTATCACATAAAGGCAATAATGCCATGGAGAAGGCCAAGGTGTGGCCTGAGTTTCAGTACAGTGAGATGTGCTTCAGTGATAGGATCATCATTGAGCTAAGTGAAGTTGGTGTATCCATTGAACCCGTGCCTGATCTTGCCCAGAGTGAAGATGAAGATATCAATTCCGAAATCTGCAAATTAGAAGGCCAACTTCATAAAGAGGTTGTAGATAAGAAAAACTTGCTACGGAAGCTGGATGGCATTCTTAGAACTAAAAAGGAGTCACAGCACAGGGAATTTTCACGGCGTGCCATGGAAAGGCTTTTGCTGATAGCGTATGAGAAATACATGGCCTTCTGTGGTTCTTCAAGTAGCAAAAATGTAAATAGAGCTGGCAAACATGCTGCTCTAAGTTTTGTTAAACGAACAATAGCACGTTGCCAGAACTATGAGGAGTCAGGAGCTTGCTGCTTTGATGAGACCCCTTTCAAGGATATGTTTGTATCAGCAACTTCTCACAGAAGCGACCCAGATTCTGCTTCACAAGACAATATTACGGTACCAAAATCAGTCCAAAGGGCTAGTACATCAGATGCCTCTCGAGCAAGCAGTCACCTTACGGATCTGTCATTTTCGAAAGAGGATCCCTGGACAAATAATGTAAAACAACGGGAATTGTTGCTTGATGAAGTTGTAGGTAGCATAACAGGAGGAAC | |||||||||