| mature miRNA: GGCAGAGCATGGATGGAACTA species: Poncirus trifoliata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57876490|gb|CX641661.1|CX641661 UCRPT02_54F09_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifolia GGCAGAGCATGGATGGAACTA EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTTTTGAAAAGCCGAAGTTAATTAATTAATTACCATTTTAAATGTCAATCAATTAATAAGAATGATAAAAATACATCTTTGAAAATCTAGCAGAATTTGGGCCTAAAACCACCAGAACCCTCCAGCGTTTTTTTAGCTGAAAAAAATGGGGAAAAAAGAAAAAGAAAAAGAGTTTAAAATGATTCAATAATGGTATGATACAGTACAACTTTAATGGCTAGGATAAAATGAAAGCCAAAATTTGCCGCCAACAATGCCTTCCTCTGCTAGTGACTATATAGTCTATATATACGAATTTGCATGATGGATCGAGGTAGTTCCTTGCAAGCTCTGCCGTAGCATTTCTATGGGTTGAAGAAACTTGAGCCCCCCATATTGATAGCAATCAGTACTAGTATAATTGTGATTACAGCAAGCCAAACTAAGGTTGATCCTGCAGAAGGCCCATCAGAATCTGAGGGTGATGATTCAGCTCTAAGACCACGAGATCTCAATCCAGTAGACCCTGTACTAGAGACATCATCGAAAATTTTGTTATATCCAGTTTCAGATGAAACTATTCCCTGAAATTCCTCACTCACGAGCAAAGCTGCCAGAACATCCATAAAATCTTTATCCCTTTCATTTGAAGAATCCGTTTGCCCCCGCTTATAAGAACTATCTGTTTCATCGTAATCAGTAAACTCATCATCAGAAGCATCAGTATCAATGGATTCTGCCATAGTTGTGTCATCTTCTTCATCCTCAACGTATGCTTTATAAGTAAGTCGAAGCAGTAACTCTCCAGTAAAACCATTTTTGAACAA | |||||||||
gi|57879115|gb|CX644286.1|CX644286 UCRPT02_72H12_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifolia GGCAGAGCATGGATGGAACTA EST sequence (targeted fragment marked with yellow): TTTTTTTAAGTGCACATTTTATTATTATGTTGTTTGAAACAATTTAAGATCTACAATTATTAATTTGACTAGAAAAAAAAAAGAAAAAAGAAGAATCTGCTACCTTATTATTCTACACGATTTATTAATTTGTTACAAAAGAAAGGCCTTAACAAGAAAGTATCTCGGCCGCCGTGCTGCTGGGGCTGAAGCCATAATTAAATCATTATAGCCGCATTCACACCCTCTGCTGCATGATCTTTAATTAGGTTGCTAGATTTTCAACAATGAAAAAGGTCACAAATTTGTCGAAAAAGATGTCAATATAAATACACACACACACACACACACTGTTATAACAAAAGTAAGTAAAAATTGCAGATAACATCAAATAAATGAATGCCAAGACAACAGAAATGAAAAAGTAAATGGAGAGGGGAAAAAGACGAGGAAGGCAGAGAGCCAGGGAAGAGGCAGTGCATGGGAGGAGCCAAAACAGGGAACCTGTTAATAGTTCCATCCATGCTCTGCCTGTTCCCCGTCTTTTGTCTCTTGATTCTTGCCTCTCTCTCTCTCTCTCACGCACACACCAAAGAGTTATTACCTCGTACCCCTTAACCATTTGCCGTCTCAGAGTCCGGCTCTTGTCTCACTCCCTCAAAAACCTTACCTGGGCCTC | |||||||||
gi|188458558|gb|EY830268.1|EY830268 PT11-C2-300-049-A02-CT.F Poncirus trifoliata bark, greenhouse plant Citrus trifoliata cDNA, GGCAGAGCATGGATGGAACTA EST sequence (targeted fragment marked with yellow): GGGACGGGTCGGGATTCCCGGGTCGACCACGCGTCCGTTTGCTTGGAACAACTCCGTAGCCAATGTTTGATCTCTAGCTCCAAGCATGTTCTGCCCATCAGCAACAATTAGACCATTCTGCAAAATCAAGATTTTCGACCTAAAAAAGACGGTGTATAGGCATGAATCCAAGCGATTTTGGTTCCGAAAGATCAAAGCCATGGAACATCTACACAAGTTCAGATCCCAGTCCATCTCCAGCGGATGCTGTTGATCAGGATGCAGCAGCTCCATGGAAGAACTTTGGAACTTCACTGAGTGCTATCTCTTCCGGCCGAGCATGAAACGCGTAGTTCAGCCAGCAGCCCCCCTCGCCCTACACCACCTTCCCGACTAAGGAAGGCCAATAGCCACACCAGGAAGAATAAAAAAACAACACCTGCTCCAGACAACGAACTCCCCAACGCGAGAGAACCAACAGCAGCAACGACCCGCAGAACCAACAACGAACAAACCACCACCAAACTCCCCACCCAAGACAGACGCCAAGCCACATCACAACGACACACGGAGACCAACCGTGAGCAACAACAAGGACCAAAAACACGCCACAAGAAGACACACCACAATAAAAAGAAGGAATGAGAACGCCAACCCCGACGCACAGACCAACGCAACACGCAACCCCCACGAACCCGCAACAAGCGCACAAAACAAGAAGCAAAAACACAACAAACAGGCAACGCAAAGAGACAGCCTGAAAAGGCAGGCGGTACAACCGCCAGCAACCAAGCGCCGAGGAACGCCAAGGCAAACACCCGGCAACCCAGCACACAACAAGCAAATCAGCCCGAAGGGCACACCAGGAACAGCCGACGGCACAAGGGACGGCACTGAGCGCAGGGAAGGAACGCGAACGCGGCACCGCAACCATGCACCACGCCGAGCCCCAGACGCCAGGGAAAGCAACAGCTGGGCGAAGGCCGGCAGCCCGGCGCCCGTAAAGGGCGGGCCGGCGC | |||||||||