| mature miRNA: GGCAGAGCATGGATGGAGCTA species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164392102|gb|DB954957.1|DB954957 DB954957 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_051_F2 GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): CAACAGGCACTTGATTTGAAGCCTAACTATGTTCGTGCATGGGCAAACATGGGAATCAGTTATGCCAACCAGGGTATGTACGAGGAATCCATTCGGTGCTATGTGCGGGCACTTGCTATGAATCCCAAGGCAGATAATGCTTGGCAATATTTGAGAATTTCATTGAGCTGTGCTTCTAGGAAAGACATGCTGGAAGCTTGTGCTTCTCGGAATATAGACCTCCTGCAGAAAGAGTTTCCGCTGTAAGTTTGAAAGTGACAGATGAATACTAGGTTAGGTTCCATTTGCTCAGTCATTTGCTGAGAGTGAGGGCTATACATTTTAAATCCTCCTCTGTGCCCACTAAATAGCTACATCCATGTTCTGCTACATTCACATCTGCTTTATACTGAGCTTGGAACACTTCACTGTGATATTTTCAAGTTGGAAAACCAAATACGGAAACTGGAGCTAACACAAACAATCGTATGTAGTTTCAAATGCTGTACTAGTAGGTATCTTGATTCTTCAACAC | |||||||||
gi|119010584|gb|DV448722.1|DV448722 CV01025B1B01.f1 CV01-normalized library Manihot esculenta cDNA clone CV01025B1B01.f1, mRNA s GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): TTGCCCTCAGAGATTGCGGAGGAATGGCTTGCCGCATCTGCAGTATAAGGTAAGTAAATGGGATTTGGGATTCGTGGAAGAGGGTAAAGAAAGAGACGGACAAAGACTGGGAACAGGCAGAGCATGGGTGGAACTATTAACACAAGTATCTGTTTTAGCACCACCCATGCACTGCCTCTTCCCTGGCTTGCGGGTCTTCTTTTTCTGCTCCCTCACTTGTTTTCATTTCCATCTATTCTCGATTCAAAGTCCCTGTTTGAGGGAAATATTAGCCTTCATGTTTGGAATTTACTGCGTATCATATCATTATCGGTAACAAATTTGCAATTTTCTTCTGTTCAATATAGACTAATATTTCCTGACGTTTAGTATTTTATTGACCGTTTTCTGATGAGTTGATAAATCACGGAGATTGGAGAGATGATGATTGTTGCGGTTCCATTTTCTGTAATGGGTCTCCAGTTTTCTGTCTGATAGTGCTAAATCCACGTCCTTTTTGCCAATGGAAATTTCGTTCACAGTGAGGTTATGAAGTCCCGTTCTCGACTATTGTCATGTCAAGCAAATCTTTAAGGAGCAAGCAGAGTTGAAGAAATTTAGCTATATTCAATTACTTACTGAATACAAATTCTTTGTTTGTAACAGAAATTAATTCAAATAATATGACGAAGTGGATTTCTGCAAAAAAAAAAAAAAA | |||||||||
gi|119003698|gb|DV444153.1|DV444153 CV01012A2B09.f1 CV01-normalized library Manihot esculenta cDNA clone CV01012A2B09.f1, mRNA s GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): CTGCAAAATAGCATGGTATCAGCATGGCAAGGCAAGTGAATGGGATTTGGGTTTTGGGGAAGCGGGGAAAGAAAGAGGCTGACAAAGACTGGGAACAGGCAGAGCATGGATGGAGCTATTAATGGAAATATCTGTTTTGGCTCCACCCATGCACTGCCTCTTCCCTGGCTTGTGGCTCTTCCTTTTCTCCCTCCTCACTTTTTTTCGTTTTCACCATTTCGTGCTTATACTTCATTTAAGAACCCTGTTAAGGGAATTGTTAGCATTGATGTTTGGAATTTTCTGCGCATGATATTTTTATGTCTAACGTTGAAAAATCG | |||||||||
gi|119005310|gb|DV447780.1|DV447780 CV01022B2A09.f1 CV01-normalized library Manihot esculenta cDNA clone CV01022B2A09.f1, mRNA s GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): GCCCACAAAGAATGTGGAGGAATTTGGTAGATTTCTCGCTGCAAAATAGCATGGTATCAGCATGGCAAGGCAAGTGAATGGGATTTGGGTTTTGGGGAAGCGGGGAAAGAAAGAGGCTGACAAAGACTGGGAACAGGCAGAGCATGGATGGAGCTATTAATGGAAATATCTGTTTTGGCTCCACCCATGCACTGCCTCTTCCCTGGCTTGTGGCTCCTCCTTTTCTCCCTCCTCACTTTTTTTCGTTTTCACAATTTCGTGCTTATACTTCATTTAAGAACCCTGTTAAGGGAATTGTTAGCATTGATGTTTGGAATTTTCTGCGCATGATATTTTTATGTCTAACGTTGAAATTTTCTTTTGCCTGATTTAGACTAACATATGCTGACCCTTATCGCTAGATTAGCATTTTATTTATCTCTTTGATGAATTGATACATCTTGAAGAATGAAGAGATGATGATCGATGCAATTCCATTTTCTATACTGGGTCTTGACTCTTGAAGAGAGATGGTTTTGGCCAAGGGAAATATCGTTCCGAGGACGTTGATGACTATGAATCCTGAACTCTCGTTTTGTCAAAACCAATTCTTGAGAAGAAGTCTAAGGAAATGTACCTAATCTTCTTGTTACATTATAGCATATTGAATACAGATTTTCTTGGTTTACCAAAAAAAAAAAAAAAAAATC | |||||||||
gi|15005041|gb|BI325103.1|BI325103 baa01f06.x2 Cassava EYC library1 Manihot esculenta cDNA 3' similar to TR:Q9TLH4 Q9TLH4 RIBULO GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): CGCCTTGAGGCTTGCAGGCAACGAACCTGATGCGCTGCACTTGGCGAACATTGATCAATCCAACGATGCTAGCATAGCCCTCGGGGCGAGGTTTGTCCAGGTTATAAAGCTTTTTAAACGCCTGGGCTGCTAATGTGCCCCCAACCATGGGCAGTTTCAACATGGACCAGTTTTGCCCATCTTAACGCCCTTGCCCTCTTGCATGCTCAAGGTACCCCAATCCATGCTCTGTCCCCAACTCCACGTCCGGACC | |||||||||