| mature miRNA: GGCAGAGCATGGATGGAGCTA species: Populus trichocarpa x Populus deltoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73923696|gb|DT507006.1|DT507006 WS02417.BR_B15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02417_B15 GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): GATCTTTGTTCTTTGATAGATTTACTCACATCATTATAATCTCCCGATCCTCTCTCTCTACGTATATAGGTCATGGCAATGCAGGAACAATCAAGAACAACACGACATAAACAAACCGATGCCAACCCCCTTCAGCAGGAGGGTGATGAGGCACTTCTGGAGGCTGCAGCACGATCCACCTGCCGGCATCATTGGTGCTCCACAGGACCAGAACATCCTGCTTTGGAACGCTGTTATTTTCGGACCTGATGATACTCCATGGGATGGAGGGACGTTTAAGTTGACTCTTGCGATTCTGGGACGATGATCCAAATAGACCTCCAAGAGGCGGATTTGCTTCCCGGATGTTTCATCCTGACATTTATGCATATGGAAGCATATGCTTGGACGTCTTACACAATGAGGGGAGACCGATATATGATGTGGCTGCTATACTTACCTCCATCCAGGCTCTGCTCTGTGATCCAGACCCTCACTCCCCAGCAAACTCTGAAGCCGCTCGCATGATCGAAGAGACTAATCGGGAGG | |||||||||
gi|28607339|gb|CA823790.1|CA823790 R31D07 two-month-old roots from clone 'Beaupre' Populus trichocarpa x Populus deltoides cDNA GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): AAGGGGAAGCGTGTTCCAAAACTTTGTTGTAAGCTTTTTTTTCAAGGAGAAGGCTGAGGCTTTGAGAGGTTAATTTTGGTGGCAGTAGCTGACATGGTATGGAAGCACAATGAAAGGTGAAGGTACGTAAACAGGGNATCGTGGGGAGAGGGAGCAGAAAGAGACAGATGAAGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACATGTTTTGGCTCTACCCATGCACTGCCTCTTCCCTGGCTTGTGGCTCTTCTTTTTCTCCTCCCTTCTTTTGTTTCCATTTACTTTTTTTTTTTTTCTGTCACTTATTTTAAAACTGTGNNATAA | |||||||||