| mature miRNA: GGCAGAGCATGGATGGAGTCA species: Vigna unguiculata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|190521703|gb|FG913766.1|FG913766 UCRVU08_CCNS8995_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 GGCAGAGCATGGATGGAGTCA EST sequence (targeted fragment marked with yellow): CTTTTGCACCCAACAAATAAATGGTGTAAAATTCTGGGGTCCAACAGAACAAGTAATGCAAATTTCTGAGACCCACAGAGGTACAAAGTCAATCATCCAAGGCATGGAACACAAACACATCCCATGAGCCATCATCATCATCATCCACTCCTTCATTCCCTTTTTGCTTTTCCTTTTTTTTTTCGTGTCTTGTGGTGTTCTTTCCAATTCTTCTAATTCCTTCTACTTTACAAATTGAACAAGGGATTGCAGGTTGCAACTGTGTGCTGCACTGCACTGCACTAATTGTCTTCTCTGGCTAGAACTACACGTTTTCTGATTCCCTTCATGCTTTGCACTGTGCCTTCTATTCTGTCACTTTTCTCCCTGTGTGGGTTGGGTTGAGTTAGCATACTATAATGACATGGGTTTTCAGTGGTTTCTCATGTGACACCATGA | |||||||||
gi|190520830|gb|FG909968.1|FG909968 UCRVU08_CCNS6967_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 GGCAGAGCATGGATGGAGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTATAATCCAATAAATTTACTCAAATTCTACTGATTAACTTGCAATTAAGAGGAAAATTAGAACAAGCTTGATTCCATCATGCTCTACCAAGCAAAGAACAATCAAGTAATAAAACCATTACACAAAACACAAAGTCCATACATTTACAGAACAAAAGCCCACAAGACAAAACCCAACCCAGTAGGCCCAATACCAGAACCCCTCAACCTCCGAATCCATAGAGGGTCCTTCCCTGTCTCTTGAGCGCGTAAACAACATCCATGGCCGTCACCGTCTTCCTCCTTGCGTGCTCAGTATACGTCACCGCATCCCGAATCACATTCTCCAAGAAAATCTTGAGAACCCCGCGAGTTTCTTCGTAGATCAACCCGCTGATTCTCTTCACGCCACCTCTTCTCGCCAACCTGCGAATGGCGGGCTTCGTGATACCCTGGATGTTGTCACGGAGCACCTTGCGATGCCTCTTGGCGCCTCCCTTTCCCAAACCCTTTCCACCCTTTCCACGACCAGACATTGTGTGATTAAGATTTGAATTGGGATTTTGTGAGGAGTT | |||||||||
gi|190472132|gb|FG868271.1|FG868271 UCRVU07_CCNP5265_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vign GGCAGAGCATGGATGGAGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTATAATCCAATAAACCCAAAAAAAATTCTACTGATTAACTTGCAATTAAGAGGAGAATTAGAACAAACTTGATTCCATCATGCTCTACCCAGCAAAGAACAATCAAGTAATAAAACCATTACACAAAACACAAAGTCCATACATTTACAGAACAAAAGCCCACAAGACAAAACCCAACCCAGTAGGCCCAATACCAGAACCCATCAACCTCCGAAGGGGGGGGGGGGCCGTCCCTGGGGGGGGG | |||||||||
gi|190515784|gb|FG906161.1|FG906161 UCRVU08_CCNS4410_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 GGCAGAGCATGGATGGAGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTATAATCCAATAAATTTACTCAAATTCTACTGATTAACTTGCAATTAAAAGGAAAATTAAAACAAGCTTGATTCCATCATGCTCTACCAAGCAAAACAATCAAGTAATAAAACCATTACACAAAACACAAAGTCCATACATTTACAGAACAAAAGCCCACAAGACAAAACCCAACCCAGTAGGCCCAATACCAAAACCCCTCAACCTCCGAATCCATAGAGGGTCCTTCCCTGTCTCTTGAGCGCGTAAACAACATCCATGGCCGTCACCGTCTTCCTCCTTGCGTGCTCAGTATACGTCACCGCATCCCGAATCACATTCTCCAAGAAAATCTTGAGAACCCCGCGAGTTTCTTCGTAAATCAACCCGCTGATTCTCTTCACGCCACCTCTTCTCGCCAACCTGCGAATGGCGGGCTTCGTGATACCCTGGATGTTGTCACGGAGCACCTTGCGATGCCTCTTGGCGCCTCCCTTTCCCAAACCCTTTCCACCCTTTCCACGACCAGACATTGTGTGATTAAAATTTGAATTGGGATTTTGTGAGGAGTTGAGAAATTA | |||||||||
gi|190522804|gb|FG910122.1|FG910122 UCRVU08_CCNS7056_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 GGCAGAGCATGGATGGAGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAAAACAAGCTTGATTCCATCATGCTCTACCAAGCAAAGAACAATCAAGTAATAAAACCATTACACAAAACACAAAGTCCATACATTTACAGAACAAAAGCCCACAAAACAAAACCCAACCCAGTAGGCCCAATACCAAAACCCCTCAACCTCCGAATCCATAGAGGGTCCTTCCCTGTCTCTTGAGCGCGTAAACAACATCCATGGCCGTCACCGTCTTCCTCCTTGCGTGCTCAGTATACGTCACCGCATCCCGAATCACATTCTCCAAAAAAATCTTGAGAACCCCGCGAGTTTCTTCGTAAATCAACCCGCTGATTCTCTTCACGCCCGGACGCGGGG | |||||||||
gi|190539968|gb|FG926975.1|FG926975 UCRVU09_CCNT8044_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vign GGCAGAGCATGGATGGAGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTATAATCCAATAAATTTACTCAAAATTCTACTGATTAACTTGCAATTAAGAGGAGAATTAGAACAAACTTGATTCCATCATGCTCTACCAAGCAAAGAACAATCAAGTAATAAAACCATTACACAAAACACAAAGTCCATACATTTACAGAACAAAAGCCCACAAGACAAAACCCAACCCAGTAGGCCCAATACCAGAACCCATCAACCTCCGAATCCATAGAGGGTCCTTCCCTGTCTCTTGAGCGCGTAAACAACATCCATGGCCGTCACCGTCTTCCTCCTTGCGTGCTCAGTATACGTCACCGCATCACGAATCACATTCTCCAAGAAAATCTTGAGAACTCCGCGAGTTTCTTCGTAGATCAACCCACTGATTCTCTTCACGCCACCTCTTCTCGCCAACCTGCGAATGGCGGGCTTCGTGATACCCTGGATGTTGTCACGGAGCACCTTGCGATGCCTCTTGGCGCCTCCCTTTCCCAAACCCTTT | |||||||||
gi|190551302|gb|FG940055.1|FG940055 UCRVU09_CCNT16671_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vig GGCAGAGCATGGATGGAGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTCTTTTTTTAGAACAAACTTGATTCCATCATGCTCTACCAAGCAAAGAACAATCAAGTAATAAAACCATTACACAAAACACAAAGTCCATACATTTACAGAACAAAAGCCCACAAGACAAAACCCAACCCAGTAGGCCCAATACCAGAACCCATCAACCTCCGAATCCATAGAGGGTCCTTCCCTGTCTCTTGAGCGCGTAAACAACATCCATGGCCGTCACCGTCTTCCTCC | |||||||||
gi|182654921|gb|FF548624.1|FF548624 MOPFT27TR MOP Vigna unguiculata cDNA 3', mRNA sequence GGCAGAGCATGGATGGAGTCA EST sequence (targeted fragment marked with yellow): AGAACAAACTTGATTCCATCATGCTCTACCAAGCAAAGAACAATCAAGTAATAAAACCATTACACAAAACACAAAGTCCATACATTTACAGAACAAAAGCCCACAAGACAAAACCCAACCCAGTAGGCCCAATACCAGAACCCATCAACCTCCGAATCCATAGAGGGTCCTTCCCTGTCTCTTGAGCGCGTAAACAACATCCATGGCCGTCACCGTCTTCCTCCTTGCGTGCTCAGTATACGTCACCGCATCACGAATCACATTCTCCAAGAAAATCTTGAGAACTCCGCGAGC | |||||||||
gi|190546582|gb|FG930019.1|FG930019 UCRVU09_CCNT10480_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vig GGCAGAGCATGGATGGAGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTCTTTTTTTTTTTAGAACAAACTTGATTCCATCATGCTCTACCAAGCAAAGAACAATCAAGTAATAAAACCATTACACAAAACACAAAGTCCATACATTTACAGAACAAAAGCCCACAAGACAAAACCCAACCCAGTAGGCCCAATACCAGAACCCATCAACCTCCGAATCCATAGAGGGTCCTTCCCTGTCTCTTGAGCGCGTAAACAACATCCATGGCCGTCACCGTCTTCCTCCTTGCGTGCTCAGTATACGTCACCGCATCACGAATCACATTCTCCAAGAAAATCTTGAGAACTCCGCGAGTTTCTTCGTAGATCAACCCACTGATTCTCTTCACGCCACCTCTTCTCGCCAACCTGCGAATGGCGGGCTTCGTGATACCCTGGATGTTGTCACGGAGCACCTTGCGATGCCTCTTGGCGCCTCCCTTTCCCAAACCCTTTCCAC | |||||||||
gi|190556913|gb|FG941515.1|FG941515 UCRVU09_CCNT7183_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vign GGCAGAGCATGGATGGAGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAAAGAGGAGAATTAAAACAAACTTGATTCCATCATGCTCTACCAAGCAAAGAACAATCAAGTAATAAAACCATTACACAAAACACAAAGTCCATACATTTACAGAACAAAAGCCCACAAAACAAAACCCAACCCAGTAGGCCCAATACCAAAACCCATCAACCTCCGAATCCGGACGCGGGG | |||||||||
gi|190488146|gb|FG880881.1|FG880881 UCRVU07_CCNP13856_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vig GGCAGAGCATGGATGGAGTCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAAGAGGAGAATTAGAACAAACTTGATTCCATCATGCTCTACCAAGCAAAGAACAATCAAGTAATAAAACCATTACACAAAACACAAAGTCCATACATTTACAGAACAAAAGCCCACAAGACAAAACCCAACCCAGTAGGCCCAATACCAAAACCCATCAACCTCCGAATCCATAGAGGGTCCTTCCCTGTCTCTTGAGCGCGTAAACAACATCCATGGCCGTCACCGTCTTCCTCCTTGCGTGCTCAGTATACGTCACCGCATCACGAATCACATTCTCCAAAAAAATCTTGAGAACTCCGCGAGTTTCTTCGTAAATCAACCCACTGATTCTCTTCACGCCACCTCTTCTCGCCAACCTGCGAATGGGGGGCTTCGTGATACCCTGGATGTTGTCACGGAGCACCTTGCGATGCCTCTTGGCGCCTCCCTTTCCCAAACCCTTTCCACCCTTTCCACGACCAGACATTGGG | |||||||||