| mature miRNA: GGCATCGGGGGCGTAACGCCC species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211895310|gb|DV977069.2|DV977069 GQ0066.B3_A11 GQ006: Cambium and phloem from mature trees Picea glauca cDNA clone GQ0066_A11 GGCATCGGGGGCGTAACGCCC EST sequence (targeted fragment marked with yellow): CATTGTTCTATTGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCATGGACGGTACTCGGTCCTCCAGATTTTCAAGGGCCGCCGAGGGCGCACCGGACACCGCAAGACGTGCGATGCTCTTCCAGCTGCTGGACCCTATCTCCGGTTGAGCCGATTTCAGGGTGGGCAAGCTGTTAAAAAGAAAAGATAACTCTTCCCGGGGCCCCCGACGACGTCTCCGGATTTCCTAACGTTGCCGTCCGCCGCCATGTCCCGGTTCGGGAATATTAACCCGATTCCCTTTCGATGTTCGTGCATAGTGCACCCTTGATACAGGGCTTCCCCATCTCTTAGGATCGACTAACCCATGTCCAAGTGCTGTTCACATGGAACCTTTCCCCACTTCAGTCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGGGGACCGGTCCACCCAGGCTCACGCCCAAGGTTTCTCAACGACCCCCGCGTCCTCCTACTCATCGAAGCCTGGCAATTGCTCCGACGGTCGAGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCAACCAACACCCTTTGTGGGATCTGGGTTAGCGCGCAGTTTGGCACCGTAACTCGACTTTCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGCACGGGCTCATGGAGCAGCCGCACCGTCTTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTACGCCCCCGATGCCTCTAATCATTTGCTTTACCCG | |||||||||
gi|211881226|gb|CK435784.2|CK435784 GQ0043.TB_A21 GQ004: Non-lignified secondary xylem from mature trees Picea glauca cDNA clone GGCATCGGGGGCGTAACGCCC EST sequence (targeted fragment marked with yellow): AAGTTTGAGAATAGGTCGAGGGCGTTACGCCCCCGATGCCTCTAATCATTTGCTTTACCCGATAAAACTCGCACGTGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGAAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTACGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCTGCTCAGGCATAGTTCACCATCTTTCGGGTCCCAACAGGTGTGCTCGCACTCGAACCCTTCGCACAAGCTCAAGGTCGGTCGGCAATGCACCCCATGGAGAGGGGTTCTCGCCCGTCAGCTTCCTTACGCCTCGCAGGTTTACAAACCCACCGACTCGCACACATGTTAGACTCCTTGGTCCGTGTTAAGACGGGTCGAATGGAAAGCCCGCCAACCAACACCACGAGCGTGCAGGTGCACAGTGGCCCGCCCCAAGGGCGCACGCTTCGTTCCTCGACCGCCACAACGGCAAACCAACAGGCGGCTGATCAGTGGTCGTCCTGATTTGTCATAAATAAATAGTGTTTATGTATGTATGTATTTGTTCTGTTTCTGTGTTAAAACTCTATGTGTTCATATCTGTTTGTTTGTCGGTCGGTTGAAGCCAATACTGGTGTCCTGGCCGGCACTGCAATGCCGTTCTCGTTTAATATAAAGACTCCGTCA | |||||||||
gi|211871998|gb|DV977484.2|DV977484 GQ0065.TB_G13 GQ006: Cambium and phloem from mature trees Picea glauca cDNA clone GQ0065_G13 GGCATCGGGGGCGTAACGCCC EST sequence (targeted fragment marked with yellow): CCATTTTCGGGGCTAGTTGATTCGCCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTTCATGACCACCGTCCTGCTGTCTAATCACCCAACACCCTTTGTGGGATCTGGGTTAGCGCGCAGTTTGGCACCGTAACTCGACTTTCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGCACGGCTCAATGGAGCAGCCGCACCGTCTTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTACGCCCCCGATGCCTCTAATCATTGACAAGAGAAACAAGGGGAGCAGCCATGTCGAAGAGAGGTCGTGGAGGTAGCGCGGGTAACAAGTTCAGGATGTCACTGGGTCTGCCAGTGGCAGCCACGGTGAACTGTGCAGATAACACAGGAGCCAAGAACTTGTACATAATTTCTGTGAAGGGAATCAAGGGTCGTCTCAACAGGCTTCCTGCGGCCTGTGTTGGGGATATGGTCATGGCCACTGTCAAGAAGGGAAAGCCTGACCTCAGAAAGAAGGTTATGCCTGCCGTCATTGTTCGCCAGCGGAAGCCCTGGCGCCGAAAGGACGGTGTTTATATGTATTTCGAAGATAATGCGGGCGTCATAGTAAATCCAAAGGGAGAAATGAAAGGTTCTGCTATCACAGGGCCCATTGGGAAAGAGTGTGCTGATTTGTGGCCTAGAATTGCCAGTGCAGCAAATGCTATTGTGTAATTAGAGGGATTGCGCAATATGCTTAATAGTTGGTTTGGTAACATCTTTTTGGAGATTTTGTTAAAACTAGAAATTTTAAAGCTGCTCAATTTATGTTGCAGCGGGATAACTTAGTCTAACCTTGTAGAGTATTTCTTGAACTTCAAAGCTGCTCAATCCGTATCGCAATAGATTACAGGACTAATATTATTCCATCAACTATGTATGTGAAGGCTTTTGGTGCGTTTTTGGGTCAACC | |||||||||
gi|211891590|gb|CO476381.2|CO476381 GQ00611.TB_P24 GQ006: Cambium and phloem from mature trees Picea glauca cDNA clone GQ00611_P GGCATCGGGGGCGTAACGCCC EST sequence (targeted fragment marked with yellow): TTGAGAATAGGTCGAGGGCGTTACGCCCCCGATGCCTCTAATCATTTGCTTTACCCGATAAAACTCGCACGTGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGAAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTACGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCTGCTCAGGCATAGTTCACCATCTTTCGGGTCCCAACAGGTGTGCTCGCACTCGAACCCTTCGCACAAGCTCAAGGTCGGTCGGCAATGCACCCCATGGAGAGGGGTTCTCGCCCGCAACAGCTCAAGGTGAAGATTTGAAGAGGCAAATCGGGGCTGCAGCATACATTGAGTGCAGTTCTAAAACACAACAGATTGTTAAGGCTGTTTTTGATGCCGCAATCAAAGTGGTTCTTCAACCACCAAGGCAAAAGAAACGCAGAAAGAAGCAAAGAACATGTTTCATTCTTTGAGGGGTTTATCTATGTTTGGCATCTGCAGAACTTTAAGGTGCATTATTTAATCAAAGGCTGGCATAATATTTCCCACGTACTTATGATTTGTTACGCTATGTTCAGTATGTTGAATTTATCGTAAAGCCAGATACTCTGGCAAAAGGTCCTGGTTTTTTCATTTTATATCATTGCCTGCTGTGGTTATGGAGGACTGTTTTGAAATGTAATGAAGTTGGGTATACATGCCTATGATACTATGATGAGAGTAGTCAAATATTTTTTTGACCACCGAGTTCTCAATTGCAGTTGAAGCTCTACTGCTAAGAATTATGTTCAAGGCATGGAGGTGTTCTGCACTTTTCCCTGTCAGAAAGCCAAGTAGATTTTTTATTACTGAGTTTGGCTGTATTGTCTCAATATGCAAGGTTACTATAGTT | |||||||||
gi|211899366|gb|CO474283.2|CO474283 GQ0045.B3_L17 GQ004: Non-lignified secondary xylem from mature trees Picea glauca cDNA clone GGCATCGGGGGCGTAACGCCC EST sequence (targeted fragment marked with yellow): GCTACTACCACCAAGATGCACCGGGGACCGGTCCACCCAGGCTCACGCCCAAGGTTTCTCAACGACCCCCGCGTCCTCCTACTCATCGAAGCCTGGCAATTGCTCCGACGGTCGAGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCAACCAACACCCTTTGTGGGATCTGGGTTAGCGCGCAGTTTGGCACCGTAACTCGACTTTCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGCACGGCTCAATGGAGCAGCCGCACCGTCTTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTACGCCCCCGATGCCTCTAATCATTTGCTTTACCCGATAAAACTCGCACGTGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGAAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCCAGTCAGACGAACGATTTGCACGTCAGTATCGCTACGGGCCTC | |||||||||