| mature miRNA: GGCATCGGGGGCGTAACGCCCCT species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|61783143|gb|DN633975.1|DN633975 EST984791 Subtracted pine embryo library, Lib_C Pinus taeda cDNA clone PTADF09, mRNA sequence GGCATCGGGGGCGTAACGCCCCT EST sequence (targeted fragment marked with yellow): CCCACTTCAGTCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGGGGGCCGATCCACCCAAGCTCACGCCCGAGGTTTCTCAACGACCCCCGCGTCCTCCTACTCATCGGAGCCAGGCAATTGCTCCGACGGTCGAGTATAGGTTGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGGGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCAACCAACACCCTTTGTGGGATCTAGGTTAGCGCGCAATTCGGCACCGTAACTCGACTTTCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCACAGCGCGGCTCAATGGAGCAGCCGCACCCTCTTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTACCCCCCCGATGCCTCTAATCATTTGCTTTACCCGATAAAACTCGCGCGTGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGAAACCAGCTACTAGATGGTTCGATTAGCCCGCGT | |||||||||
gi|74154969|gb|DT626053.1|DT626053 EST1157977 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIMA656 5' end, GGCATCGGGGGCGTAACGCCCCT EST sequence (targeted fragment marked with yellow): CCGGGGCCCCCGACGACGTCTCCGGATTTCCTAACGTTGCCGCCCGCCGCCATGTCCCGGTTCGGGAATATTAACCCGATTCCCTTTCGATGCTCGTGCAGAGTGCACCCTTGATACAAGGCTTCCCCATCTCTTAGGATCGACTAACCCATGTCCAAGTGCTGTTCACATGGAACCTTTCCCCACTTCAGTCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGGGGGCCGATCCACCCAAGCTCACGCCCGAGGTTTCTCAACGACCCCCGCGTCCTCCTACTCATCGGAGCCAGGCAATTGCTCCGACGGTCGAGTATAGGTTGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCAACCAACACCCTTTGTGGGATCTAGGTTAGCGCGCAATTCGGCACCGTAACTCGACTTTCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCACGGCGCGGCTCAATGGAGCAGCCGCACCCTCTTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTACGCCCCCGATGCCTCTAATCATTTGCTTTACCCGATAAAACTCGCGCGTGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGAAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTACGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCTGC | |||||||||
gi|51896780|gb|CV134465.1|CV134465 EST845674 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIATD72 5' end, m GGCATCGGGGGCGTAACGCCCCT EST sequence (targeted fragment marked with yellow): ATGTCCCGGTTCGGGAATATTAACCCGATTCCCTTTCGATGCTCGTGCAGAGTGCACCCTTGATACAAGGCTTCCCCATCTCTTAGGATCGACTAACCCATGTCCAAGTGCTGTTCACATGGAACCTTTCCCCACTTCAGTCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGGGGGCCGATCCACCCAAGCTCACGCCCGAGGTTTCTCAACGACCCCCGCGTCCTCCTACTCATCGGAGCCAGGCAATTGCTCCGACGGTCGAGTATAGGTTGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCAACCAACACCCTTTGTGGGATCTAGGTTAGCGCGCAATTCGGCACCGTAACTCGACTTTCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCACGGCGCGGCTCAATGGAGCAGCCGCACCCTCTTACCTATTTAAAGTTTGAGAATAGGGTCGAGGGCGTTACGCCCCCGATGCCTCTAATCATTTGCTTTACCCGATAAAACTCGCGCGTGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGAAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTACGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCTGCTCAGCATAGTTCACCATCTTTCGGGTCCCAACAGTGTGCTCGCACTCGAACCCTTCGCATAAGCTCAAGTCGGTCGA | |||||||||
gi|51900212|gb|CV137897.1|CV137897 EST849106 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIAW06 5' end, m GGCATCGGGGGCGTAACGCCCCT EST sequence (targeted fragment marked with yellow): GGTGCGGCTGCTCCATTGAGCCGCGCCCTCTTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTACGCCCCCGATGCCTCTAATCATTTGCTTTAAATAGGTAAGAGGGTGCGGCTGCTCCATTGAGCCGCGCCGTGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAAAGTCGAGTTACGGTGCCGAATTGCGCGCTAACCTAGATCCCACAAAGGGTGTTGGTTGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCAACCTATACTCGACCGTCGGAGCAATTGCCTGGCTCCGATGAGTAGGAGGACGCGGGGGTCGTTGAGAAACCTCGGGCGTGAGCTTGGGTGGATCGGCCCCCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGACTGAAGTGGGGAAAGGTTCCATGTGAACAGCACTTGGACATGGGTTAGTCGATCCTAAGAGATGGGGAAGCCTTGTATCAAGGGTGCACTCTGCACGAGCATCGAAAGGGAATCGGGTTAATATTCCCGAACCGGGACATGGCGGCGGGCGGCAACGTTAGGAAATCCGGAGACGTCGTCGGGGGCCCCGGGAAGAGTTATCTTTTCTTTTTAACAGCTTGCCCACCCTGGAATCGGTTCACCCGGAGATAGGGTCCAGCAGCTGGAAGAGCACCGCACGTCTTGCGGTGTCCGGTGCGCCCTCGGCGGCCCTTGAAAATCTGGAGGACCGAGTACCGTTCATGCCCGGTCGTACTCATAACCGCAT | |||||||||
gi|61769325|gb|DN626943.1|DN626943 EST977759 Subtracted pine embryo library, Lib_C Pinus taeda cDNA clone PTAAB81, mRNA sequence GGCATCGGGGGCGTAACGCCCCT EST sequence (targeted fragment marked with yellow): CGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCACGGCGCGGCTCAATGGAGCAGCCGCACCCTCTTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTACGCCCCCGACGCCTCTAATCATTTGCTTTACCCGATAAAACTCGCGCGCGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGAAACCAGCTACTAAATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTACGAGCCTCCACCAAAGTTTCCTCTGGCTTCGCCCTGCTCAGGCATAGTTCACCATCTTTCGGGTCCCAACAGGTGTGCCCGCACTCGAACCCTTCGCATAAGCTCAAGGTCGGTCGACGATGCACCCCCCCAAAAAAGGGGATCTCGCCCGTCAGCTTCCTTGCGCCTCGCAGGTTTTCAAACCCGCCGACTCGCC | |||||||||
gi|61780521|gb|DN632635.1|DN632635 EST983451 Subtracted pine embryo library, Lib_C Pinus taeda cDNA clone PTACS13, mRNA sequence GGCATCGGGGGCGTAACGCCCCT EST sequence (targeted fragment marked with yellow): CATGACCACCGTCCTGCTGTCTTAATCAACCAACACCCTTTGTGGGATCTAGGTTAGCGCGCAATTCGGCACCGTAACTCGACTTTCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCACGGCGCGGCTCAATGGAGCACCCGCACCCTCTTACCTATTTAAAGTTTGAAAATAGGTCGAGGGCGTTACCCCCCCGATGCCTCTAATCATTTGCTTTACCCGATAAAACTCGCGCGTGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGAAACCAGCTACTAAATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAAACAAACGATTTGCACGTCAGTATCGCTACAAGCCTCCACCAAAGTTTCCTCTGGCTTCCCCCTGCTCAGGCATAGTTCACCATCTTTCGGGTCCCAACAGGTGTGCTCGCACTCAAACCCTTCGCATAAGCTCAAGGTCGGTCGACAATGCACCCCCCCAAAAAAGGGGATCTCGCCCGTCAGCTTCCTTGCGCCTCCCCGCGACCTG | |||||||||