| mature miRNA: GGCATGGGGATGTCAAAAGGA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88249221|gb|CI249070.1|CI249070 CI249070 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat GGCATGGGGATGTCAAAAGGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTGAGCTCAAGAATCACTCTGATGATACCCCCAACATCTTTGCTATCAATATCCAGAATATGAGGGTGTCTACTGTTTGCTCTATGAAAACTGAGCTGCATCAGAAAAACCAAGCTCTCCAAGCTAGCAGAAAGCTTGCAGAAGGCAAAGAACCAAGGCCATAATTCTCTGCATTCTCAGTCAAACAGAGTAATTGATAGTCAACATAGCTTGTATAAGATTCTACTTGTTAGGCTTCAAAAGTCACCGTATCGTCGAATCAGTTAAGCCATGGATTCTTCAAGCAAGCTGCAGCTGTGGGTCTGTTTTCAGGAGTAAAATCTAGAATTGGACGAAGAAAATCAGCTAAACCTTGGGCATCAGGTTCAGTGAAATTGTATCTCTGAACAAGTAGACGTTCTAGAGGCCAGAATTTCAGCCTTCTGATCCTCTTTAAATCTCCATGCCGATCAAAGTAATCCTTTGAACGAGTACCTGAGCTAGCAATCTTCTTAGGCATCTTTCCAAGG | |||||||||
gi|58661254|gb|CK049934.1|CK049934 45844rsiceh_15893.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G GGCATGGGGATGTCAAAAGGA EST sequence (targeted fragment marked with yellow): GAAAAACTCCATCCCTTTCCTTTTGACATCCCCATGCCTGCACACCACACGGGGGGGGGCGTGGGGACGTCCAAAAGGGGATCCTATCACTATCAACTAATTTGTTCCGACCTAGGATAATAAGCTCATGAGCTTGGTCTTACTTCAGCCTAAACGAAAGAAGACTTCCATATCCAAGTTTAGCTCAGACGTAGCTGGCTTCTTTTGGGGCGTGAAGCAGTGTCAAAACAAAATACCCAATAAGCATAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGGTACCTTGTTACGACTTCACTCCAGTCGCAAGCCTAGCCTTAGGCATACCCCTCCTTACGGTTAAGGGTAATGACTTCAAACATGGGCAGCTCCTATAGTGTGACGGGCGGTGTGTACAAGGGCCGGGAACGGATTCACCGCCGTA | |||||||||
gi|89193077|gb|CI050375.1|CI050375 CI050375 Oryza sativa (japonica cultivar-group) cold treated callus Oryza sativa Japonica Gro GGCATGGGGATGTCAAAAGGA EST sequence (targeted fragment marked with yellow): GTTTGGCTCCTTTATTTTTTTTTCGTCGCGCGGGCCTCCCTTTGGGAGGCCTGCTACGCCAAAAGCGAGAAAAACTCCATCCCTTTCCTTTTGACATCCCCATGCCGCCACACCACACGGGGGGGGGCATGGGGACGTCAAAAAGGGGATCCTATCACTATCAACTAATTTGTTCCGACCTAGGATAATAAGCTCATGAGCGAAAATTAGTATATTTACCTGCGCCTCGGTAAATATCATAAGATGCCCTGCTCGGCATAAGATTGCCTCCTGCGCGAGGACTTACAAAAGGAACCACTGTACAGAGGTACCACATTGTTAATTAACATAATATCTAGGTCTGTCCCCATTCTAGAAGCTGCGGTCGTACTCGTTCGTTTGACATAAGTATTTGGTAAACTTATATCTACTGAGACAGTACTAGCCACCCGGAAATCAACCAAATCTTACGTACTGTCCCAATCTAAATTCATTATATTTTTATGCAGTCTAACTAGGCAGGGCTGAGCAAAAGTTAGCATATCTGGTTTGCTATATGTTTAGGTTATGCATTCAAAATCATGAATGGCTAATGCATAGAATA | |||||||||
gi|88825485|gb|CI776050.1|CI776050 CI776050 Oryza sativa (japonica cultivar-group) root of seedling gamma-irradiated (9.5min), a GGCATGGGGATGTCAAA-AGGA EST sequence (targeted fragment marked with yellow): GATTCGCTCATTCCACCGGTCAGAAACGTGTGCAAGCTAACAACATCGCTAGGCAAAAGGAAGTCGTTGCTTTCGAGTTTCCCACCCATGGCATCCTCCGCCGGCGACCCGCTCCTCTCCGGCGAGGCCGGCGACGGCCGCCGCAGGTTCGTCCCGTCCACCATACGGCTCAAGACGTCGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGGGCACCTACATCCCCATCGTGCTGGCGCTGTCGCTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCTCTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCGCTCTCCTCCGNGCACCTCACCATCC | |||||||||
gi|88405556|gb|CI588762.1|CI588762 CI588762 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone GGCATGGGGATGTCAAA-AGGA EST sequence (targeted fragment marked with yellow): GGTGCAAGCTAACAACATCGCTAGGCAAAAGGAAGTCGTTGCTTTCGAGTTTCCCACCCATGGCATCCTCCGCCGGCGACCCGCTCCTCTCCGGCGAGGCCGGCGACGGCCGCCGCAGGTTCGTCCCGTCCACCATACGGCTCAAGAAGTCGGTGTGGTCGGAGCTGGGCGGGGCGGTGGGCGATCTGGGCACCTAAATCCCCATCGTGCTGGCGCTGTCGTTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCTCTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCATCGCCGCCGTCGCGCTCTCCTCCGGGCACCTCACCATCCCGCAGATCATGTCCGCTGGCCTCGCCGTCGCCGCCA | |||||||||
gi|88564023|gb|CI494740.1|CI494740 CI494740 Oryza sativa (japonica cultivar-group) 1 nuclei stage anther Oryza sativa Japonica G GGCATGGGGATGTCAAAAGGA EST sequence (targeted fragment marked with yellow): GTTGACTGGAACATCCATGGTTGATTGCTTTGAAAGAACAATAGCGTTCAACATAATGGTTAGAGCCTTTTTGGCCTACCTTCAACTTCAAATGCATCCAAGTGTCCAAGGATACAGCAACCACATATCTTCTTAAGCCACATGACTCACCAATAGGGCCATTGAAGAGTTGAATTTCTTTCCATACATCACTAACAAAACACAAGGAACTGAGATATAAATTGAAACCACTTTGCACATCTGATATGATAACTTGTATGGTGGCCTCTACGGCCCAGTAAACACGTGCTAAAGTGATATCAACTGCACCACAATCACCATTAATGCGTTTTGTGAATGGAAACGTTGCTGTAATTAGCCCAATATAATCTATTGCTCCATCAATTAACTGTAGGTCATCTTTTTCTTGCTCTCCTTTTTTTATCCTCATGTCAAACT | |||||||||
gi|88350090|gb|CI622021.1|CI622021 CI622021 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone GGCATGGGGATGTCAAA-AGGA EST sequence (targeted fragment marked with yellow): GGGTGCAAGCTAACAACATCGCTAGGCAAAAGGAAGTCGTTGCTTTCGAGTTTCCCACCCATGGCATCCTCCGCCGGCGACCCGCTCCTCTCCGGCGAGGCCGGCGACGGCCGCCGCAGGTTCGTCCCGTCCACCATACGGCTCAAGACGTCGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGGGCACCTACATCCCCATCGTGCTGGCGCTGTCGCTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCATCGCGCTCTACAACTTCGCCACCGGGCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCGCTCTCCTCCGCGCACTCACCATCCCGAAAATAATGTCCGTTGGCCTCGCCGTCGCCGCCA | |||||||||
gi|88368435|gb|CI561509.1|CI561509 CI561509 Oryza sativa (japonica cultivar-group) 2 weeks seedlings root of seedling UVC irradi GGCATGGGGATGTCAAAAGGA EST sequence (targeted fragment marked with yellow): GATTCTGAAAGTCTCCATAATTGCGACAGGGGATATCTAAACACAATAGGTACAGCACACTCTCCTTTGTTTCTAAACTTTCCTAGTAAGCCTGTTTCCGGCGCAGCCTTCAACAAGTATCCCAGTCTTTCTTCAAACGTTAATATGCAAAAAAATAAAATGATGGTCGAGAAACAATAAACCACTTCTCCCACTGCTTTCTGAGTCATCTCATGCTATATATCTGGAAGAAATCAAGACCGCCTTTCGCGAATGACATATACTGGGGTTAAAAATGCACAGAAGTGAAATGTATCCTTTGTCGTTAGGGTGTGCTAAACGCCTTTTGCTATGCCCATGCCACACTTGTTAGGAAAAGGTGTCGAAATTTGTTGGATGTATACCTCATTGTC | |||||||||
gi|44678053|gb|CR291487.1|CR291487 CR291487 Oryza sativa library (Han B) Oryza sativa cDNA clone y755e08p3, mRNA sequence GGCATGGGGATGTCAAAAGGA EST sequence (targeted fragment marked with yellow): AGGGGGAGTCCTGAATGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTGTCCGTCGCGCGGGCCTCCCAAAGGGAGGCCTGCTACGCCAAAAGCGAGAAAAACTCCATCCCTTTCCTTTTGACATCCCCATGCCGCCACACCACACGGGGTGGGGGCATGGGGACGTCAAAAAGGGGATCCTATCACTATCAACTAATTTGTTCCGACCTAGGATAATAAGCTCATGAGCTTGGTCTTACTTCACCCTAAACGAAAGAAGACTTCCATATCCAAGTTTAGCTCAGACGTAGCTGCCTTCTTTTTGGGCGTGAAGCAGTGTCAAACCAAAATACCCAATAAGCATAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCGCAAGCCTAGCCTTAGGCATCCCCCTCCTTACGGTTAAGGGTAATGACTTCAAACATGGACAGCTCCTATAGTGTGACGGGCGGTGTGTACAATGCCCGGGAACGGATCACCGGCGTATGGCTGACCGGCGAGAACAGCGAAACCGGCACATGCAGGAAATAGCAGCATGAACGAAAGAGGCGGGTCGGGGATAGTAACCGCGGAAAGGACCTTGGCCGCCATTAGCTGTTTACCAGGCACGAGAAAAATGACAACCCACGGGAAACACAGGCTGACGCAACAACGACAAAGGATGCCAAAAAACAACAGACAGACACAGTAGAACACAAAGAAATAAAAGGCAAT | |||||||||
gi|40491152|gb|BX901371.1|BX901371 BX901371 Oryza sativa library (Han B) Oryza sativa cDNA clone p543c09p3, mRNA sequence GGCATGGGGATGTCAAAAGGA EST sequence (targeted fragment marked with yellow): NATGCGGCGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTGCTTGTTACTATTTTTTTTTTATTTTTTTTAATTTTTCTATTAATTTTATTTTTTATTATGTTCATTTATTCTTTCTGTAATTGTATTTTAATTTTTTTATTTTATTATAGTTTTTTGTATAAAGGATTTAATTCTAATAATTTTGTTTTTTCTTATTTTTTAAGTTTTTTCTTTTTTTTTCTTTTCCTAGATCTTTATTCTTGTTAAACTAATATTTATATTGCCTCATAAAGTTTTCTTTTTACAGCGAATTTTTCTACTTCAGTTTCTTCTTTTTTTGTCGCGCGGGCCTCCCAAAGGGAGGCCTGCTACGCCAAAAGCGAGAAAAACTCCATCCCTTTCCTTTTGACATTCCCATGCCGNCAAAACAAACGGGGGGGGCCTGGGACTCAAAGGGATCTATATATCAG | |||||||||
gi|86430048|gb|CI082471.1|CI082471 CI082471 Oryza sativa (japonica cultivar-group) ABA: Abscic Acid treated callus Oryza sativa GGCATGGGGATGTCAAAAGGA EST sequence (targeted fragment marked with yellow): CCTTTTGACATCCCCATGCCGCCACACCACACGGGGGGGGGCATGGGGACGTCAAAAAGGGGATCCTATCACTATCAACTAATTTGTTCCGACCTAGGATAATAAGCTCATGAGCTTGGTCTTACTTCACCCTAAACGAAAGAAGACTTCCATATCCAAGTTTAGCTCAGACGTAGCTGCCTTCTTTTTGGGCGTGAAGCAGTGTCAAACCAAAATACCCAATAAGCATAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGACTACCTTGTTACGACTTCACTCCAGTCGCAAGCCTAGCCTTAGGCATCCCCCTCCTTACGGTTAAGGGTAATGACTTCAAACATGGCCAGCTCCTATAGTGTGACGGGCGGTGTGTACAACGCCCGGGAACGGATTCACCGCCGTATG | |||||||||
gi|66914824|gb|CX101672.1|CX101672 RECm2637 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl GGCATGGGGATGTCAAAAGGA EST sequence (targeted fragment marked with yellow): CCACGCGTCGCCACGCGTCGCATTCTCCTCTGCTGCTGTAGCTGGTTGGTGCCAGGATTCAATATGCGCAAACTAGCTCTTCTCACCAGACAAATCATGTAGTCTACCCTGGTGGAGCTCAAGTGAATTACAGTCACCAAACTAACTGCGTTGCGCCTTGTGATATACCCATGCCAAGGAGCATCCATGGTACCAGGATTTGATCAGGTGGAACTTCAGGGGAGGCCCTTCTTGGGCAGACGATGACTTGGAAGCATCAACTTCTGCTCACAACAATCTGCCATTTCCACCACAGCAGCAGTTTACATTCAGTGGTGATCCAGGATCATCAGCTCAGGTGAACATGCAGAGCCAGGGGAACTCAAAGCCATCAACTTCTACTACTCAAGGCAATCTTCCAACACAACAGCAATGGTCCCAATCTCAATACCATGGGAAACAACTGGGGATAAAGCAGAACATGTAGAATATGTCATTTCATTTAGTTCACCGATTTTTTTAGGAATCAATTGTTGAATTGTCACCTGTATTGTAATTTGTAATCCTCTCACTTTTTGGTCTCTGAGCA | |||||||||
gi|88379295|gb|CI508813.1|CI508813 CI508813 Oryza sativa (japonica cultivar-group) 1 nuclei stage anther Oryza sativa Japonica G GGCATGGGGATGTCAAAAGGA EST sequence (targeted fragment marked with yellow): GTTGACTGGAACATCCATGGTTGATTGCTTTGAAAGAACAATAGCGTTCAACATAATGGTTAGAGCCTTTTTGGCCTACCTTCAACTTCAAATGCATCCAAGTGTCCAAGGATACAGCAACCACATATCTTCTTAAGCCACATGACTCACCAATAGGGCCATTGAAGAGTTGAATTTCTTTCCATACATCACTAACAAAACACAAGGAACTGAGATATAAATTGAAACCACTTTGCACATCTGATATGATAACTTGTATGGTGGCCTCTACGGCCCAGTAAACACGTGCTAAAGTGATATCAACTGCACCACAATCACCATTAATGCGTTTTGTGAATGGAAACGTTGCTGTAATTAGCCCAATATAATCTATTGCTCCATCAATTAACTGTAGGTCATCTTTTTCTTGCTCTCCTTTTTTTATCCTCATGTCAAACTCCAATAGAACAG | |||||||||
gi|163929333|gb|EG713758.1|EG713758 Os6CPREST1628 6cm rice panicles Oryza sativa Japonica Group cDNA clone 6CPR-I3C12S, mRNA seq GGCATGGGGATGTCAAAAGGA EST sequence (targeted fragment marked with yellow): AGCCCGGCCTTGGCCGGACCGACAACGATGGCACCCGAGTGTCATTCCCCCTCCTGAGGGCTTTGTCATGCCGTCTCACCCCTCAAGGGTGGTTGCCGGGCGAAAGCCCAGTCTGGGCTCTTTTGAGACCTTGACGGACAGCGGTGGCGGTTTTCCGTCGCTTCTCTTCTTGGAGACGTCGTTTAGGCATCCCCTTGCCGAAACCACTCGAGCAATTGGTGCAATCACGCTCTAGATTCTCATCCTCTTGTGGCGGCGTCGTAGTTTCTACAAGTTGGCCACCTCGGAGGACCTAGGGGGCAG | |||||||||