| mature miRNA: GGCTCGTTATCTTAACGAG species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|36005303|gb|CA279490.1|CA279490 SCBFLB2095A03.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBFLB2095A03 5', mRNA seq GGCTCGTTATCTTAACGAG EST sequence (targeted fragment marked with yellow): TGAGCATGTGAGCCTCTCTGTTCCTCTCATTCCCTTCATCACCCTGCTGGTTTCCCTCTTCCACCTCTGGCCTTGGCCATGGCGTCCAGCGCCTCCCGGTTCATTAAGTGCGTCACAGTGGGGGACGGCGCCGTGGGAAAGACCTGCATGCTCATCTGCTACACCAGCAACAAGTTCCCCACTGTAATGCTAAGGCGTCCTCTCTTCTTCCATGTCTATATATGTTCAACATCCACTTATTGTAGTAGAGATTCGGGATCTTCTTGGATTCTTTTGGATTTTTTGGGATTTTCTTGGGGATTCTCTTGGGAAACTCGTTATGATAACTAGCCTGGAATTATTACAAATTCTGCAACTTCACTTCATTTCGCTTGTGTTTTACATTTTGCAGGATTACATACCCACTGTCTTCGATAACTTCAGTGCAAACGTGGTAGTCGACGGTACCACGGTGAATTTGGGCCTTTGGGATACTGCAGGGCAGGAAGATTACAACAGATTGAGGCCACTGAGCTACCGCGGAGCAGATGTGTTCGTGCTCGCCTTCTCGCTTGCAGCCGAGCTAGCTATGAGAATGTAATGAAGAAGTGGCTACCGGAGCTTCAGCATTATGCCACCGTGGTCCACATAGTGTTGGCCGGAACTAAATTGGATCTTCGTGAA | |||||||||
gi|36021505|gb|CA284265.1|CA284265 SCSFSD1064D03.b SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCSFSD1064D03 3', mRNA seque GGCTCGTTATCTTAACGAG EST sequence (targeted fragment marked with yellow): CTGGAGGGCAAACGCCGCCCGTTACGCCTTGTTCTTGGACGTCGCCGGCAGCAAACTTCGAGGAGTTGGCGGCCGATGCGCCGAACAACTGAACGTCGGCGCTGCGTCGTCGACCCGTGAGGGGAGGGTTGTGCCCCGCGTGCAACGTTCGTTCGTGTCGAGGCTGCGTGCGCTTCTGCTTCCTTTAGTAGTTGTGGGCTTGTCGCGTTCTTGCCGTTCTGTTCTGGGCTTTCAGATGAGCTGATGGATGGTCTGTTTAAATGTCATCAGACTGAATAACTATGTGTAGTACTGTAGTACGTTTTATACTCGAAGTACGCCAGGATAAGGCTGGCAAACGAGCCAGCTCGGCTCGGCTCGTTCTTGATCGTCAGGATAACGAGCCAGCTCGGTTCGGCTCGTTATCTTAACGAGCCAGAAAGCCAGCTCGGCTCGGCTCGTTACGAGCTCGAGCTGGCTCGTTAGGCTCGCGAGCCAGGGAAAAAAAAATACAAAATATAATATTTGTATTTATCTAAAGCATAAAAATATTAATAATATAAAAATAATATATTC | |||||||||
gi|268797279|gb|DV641725.1|DV641725 SUR01-189-F08-A-063.b Sugarcane root library Saccharum hybrid cultivar CoS 767 cDNA clone SU GGCTCGTTATCTTAACGAG EST sequence (targeted fragment marked with yellow): AACACCAGAGTGGATGGCACCTGAGGTACTACGAAATGAACCATCTAATGAGAAGTGTGATGTCTACAGTTTTGGAGTAATCCTTTGGGAACTAGCAACCATGCGTGTACCATGGAGTGGGTTGAATCCAATGCAAGTTGTAGGAGCAGTTGGATTCCAGAACAGACGACTAGACATTCCCAAGGACGTGGATCCGCAGGTGGCTACCATAATATCTTCATGTTGGGATAACGATCCGAGCAAAAGGCCGGCGTTCTCCCAGCTCCTGTTCCCTCTAAAGCAATTACAGCGTTTAGTTGTTACAGAAGACTGCTGACATAAGTTTCCTGAGACAAATCTCAGGACACATATATAGTCAAGTATTGAAGCTCTGTCACAGGGCTCAAATTTCCATTTTGAAGCTCGTGGAGGTATATT | |||||||||