| mature miRNA: GGGAGGAATAGGTAAAACAAC species: Quercus petraea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|295214804|gb|FN734919.1|FN734919 FN734919 WZOAQPAC Quercus petraea cDNA clone WZ0AQPAI20YP10FM1, mRNA sequence GGGAGGAATAGGTAAAACAAC EST sequence (targeted fragment marked with yellow): TATATATTCATCGGTGCTTACTCACAGTCATTTGCAAATACTGGAGCTCTAGTCACTTGTGTTATGACCTTCCCAGAAAGCCGAGGCAGTGTTATAGGCCTTCTGAAGGGTCTTGTTGGTCTAAGTGGTGCTATTATGACACAACTCTACCATGCTCTTTATGGGGATAACTCAAAGGCTCTGATTTTGCTAATTGCTTGGGTTCCGGCAGCTGTGTCCTTTGTCTTTCTACGAACAGTTCGGATTATAAAGACAGCTCGGCAATCCAACGAGCTCAAAGTTTTCTACAATTTCCTCTATATTTCACTTGGCCTTGCCGGGTTTCTCATGACTTTGATTATCATACAAAACAAGCTCAGGTTTAATAGAATTGAATATGCTGGAAGTGCTTGTGTTGTTGTTATTTTACTATTTCTCCCACTTGTAATAGTTATGAAAGTAGAATCCAAACTCTGGAGGAGAAAGGAGCACCTCATAAATGATCCTGTACAAGTGAAAGTAGTAGCTGAAAAGCCACAGGTACTGGAGCAACCAGTACTGCCCCCCAATTGAAGCACAATCAAGTGAAAGAAAGCCAGATTCTTGCTTCAGCAACATATTCAGGCCCCCCAGATAGAGGTGAAGACT | |||||||||
gi|34316519|gb|CF369273.1|CF369273 1T57 cDNA library of osmotically stressed oak cell culture Quercus petraea cDNA 5', 3' simila GGGAGGAATAGGTAAAACAAC EST sequence (targeted fragment marked with yellow): GGGTTCATTGTCAGACACACAGATGCCTGGGAGGAAAAGGGGCGCCCCAGAGGACATGATTGAGAAGACTGTTGAGAGAAGGCAGAAGAGGATGATCAAGAACCGTGAATCTGCTGCCCGCTCACGAGCGAGGAAGCAGGCTTACACAAATGAACTAGAGAACAAAGTTTCGCGTCTGGAAGAAGAAAATGAAAGGCTTCGGAAACGGAAGGTCACTCTGTCTAAAGGAAATTGACCAACATGCCGACTATCAATGAGAGCTGTTTTGATTCATATAGGAGCTGGAGCAAATGTTGCCAATTGTGCCTCCTCCAGAGCCGAGGTATCAGCTTCGTAGAACAACGTCAGCCCCATTTCTGACATGTATTTCTGTATGTGGAAACTCTGTAGATATGAAACAGATGGGGAAGCTCCTTTTTAGTTTGTTTATTTAGGTGGATGTAAGCAAAGCTGTCTCTTGATACGTCTCTCTCGCCGAATGAGCTCTGTTGCAATGCAGTCCATGGTTTGCTTCAGCCTACAATGTGATGTTGTTGTATCTATTTCTCTGTGAAATTATGTGTTATAATTTTAATTTTTTTCGAACTGTTGTACTCTTTCACTAATGAGTTTCTACAGATGTTTATGCTCAGTGCTATGACAAAAAAAAAAAAA | |||||||||
gi|262522956|gb|FP043110.1|FP043110 FP043110 LG0AAC Quercus petraea cDNA clone LG0AAC4YK04RM1 similar to NDHI_EATNI NADH-quinone GGGAGGAATAGGTAAAACAAC EST sequence (targeted fragment marked with yellow): TCCATACATATTCGTTGCCGAGCTTTTTGAAATAAATAAAGCACGTGAGGTCTTTGGAACGACAATTGGTATCTTTATTACATTAGCCAAAACTTATTTGTTCTTGTTCATTCCTATCACAACAAGATGGACTTTACCTAGGCTAAGAATGGACCAACTATTAAATCTGGGATGGAAATTTCTTTTACCTATTTCTCTCGGCAATCTGTTATTAACAACCTCTTTCCAACTCAGTTCGCTGTAAGGGAATACTTTATTCTATATTTATGGCTTGCCTCAAACAAGAGAAAGAAACAAACATAAAGATTTTCATAGATATTTACGATATGTTCCCTATGGTAACCAGGGTTATGGATTATGGTCAACAAACAGTACGAGTTTCAAGATATATTGGTCAAAGTTTCATGATTACCCTATCCCATGCAAATCGTTTACCTGTAACTATTCAATATCCTTATGAAAAATTAATCACATCAGAACGTTTCCGCGGTCGAATACACTTCGAGTTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGCCCTATGGATCTACCTGTTGTTGATTGGAAATTGGAAACTAATATTCGAAAGAAACGTTTGCT | |||||||||