| mature miRNA: GGGAGTGGGAGTGGGAGTGGG species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|215389771|gb|FG550804.1|FG550804 FSPM3926 Downregulated genes in potato cult. Sante infected by potato virus Y (PVY-NTN) Sola GGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): CCAAATGTGATAATTATTTCCATCACAAGTCCTTTGATTATCCCCACACCAGCTCCCACTCCATGGGGTTGGGATAGCACATCCTCCGGTGACGAATTTGAGGAGGAAGCAAGCTACAGCGGCGCCGGTAAGTTGAGCAAACATGTAGAAGGAGCCAGTAATAAAGGTAATATGGCCGCCGAAGGTTAATCCGCAGGTGACAGCAGGGTTAACATGGCCACCAGAGATGTTAGCTGAAACTGAAACGGCCACAAATAGAGCAAATCCATGGCAAACTGCAATAGAC | |||||||||
gi|160520526|gb|AM908230.1|AM908230 AM908230 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 3I14, mRNA seq GGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAGAACGCAGAAAATAATCATAAATATGAGATCCCAAAATAGAAATATTATAATAGCAATAACATTTGTTATTCTACTAAGTAGCATACCTCATGAAGCTACATCTAGGATTCTAAAGAAAGAAGGATGGAGAAATAGTAATAAACATCTTTTGTTACCATCTTTCTACAATCCCGTTCGTACTCCTACTCCTAATCCTGGCACTGAAGGCAAAGCGTTCAGTGCCAGGACTATCGAGCAGAAGAACTTTTCTGCTCGAGGAAGGAGGGTGGTTGTTCATCCTCCTCCTTCCTATGATAGAGCTTTCAGCAAAAGAGACTCTAGTGTTTCTTAACCGTTTTAGTACTCCATCTTTAACTCATTAGACTTGAGTCTTGTACAGCAGAATACCCCTTTTTTTAAAAAACTATGGTGTCAGGGTGTACCTCACTAATTTCATGGGGTATTTGTCATCTTTTATCCGTAACATGTATCATGTAACTCTGTTTGACAAAGTTAAGACAGATGAAAAGAAATTACTTAATGTTTTTGTCTCTACTGGGATTTGAACCTGAATTCCATGGTTCTCAACTCACGTTTGATCATTCTTTCA | |||||||||
gi|115277569|gb|EG015810.1|EG015810 SDBN005P23u SDBN Solanum tuberosum cDNA clone SDBN005P23, mRNA sequence GGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): CTCCCCCTATAATGAGAGCTCCCCCCATGTGGTATCCCCCTCTCTCGAGATATTAACTCCCCTCACGTGTGAGATTGTGTCTCGGGCCCCTGATGAGAACACGGTCGATCTCCCCAGACACCACACTCTCGTGTATACACCCTGTCTCTGGAGTGTGGGGGGCTTTTTCCCCCCCGCGCCCCTCTCTATACACTGTGTCGCGGTGCACTCTATCTCCCCAAACACCACCTCATATCGCGCATTATAGAGAGATTTAGAGAGAGTGTTCTCCTCTATCTCATACACCCACACCCCCTCCCTCTCCCC | |||||||||
gi|160521144|gb|AM909478.1|AM909478 AM909478 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 9J17, mRNA seq GGGAGTGGGAGTGGGAGTGGG EST sequence (targeted fragment marked with yellow): ATATCGAATTCCATCAGGCAGAGGACGAGACAGAACGCAGAAAAGCAAATTCAATCACAAATACTATAAAACTTCTTCAAATTAAATTACATAGTTTGTGTTTGATTACAGAAATATGGCACATAAGGGTACTAGCCAAGGCCAAATGCACCTAACTGATGAACATGGAAATCGAGTTCATCAAATTGATGAACCCAATGCAATCCAAGGTATAGCTATGGGGTTCGCCCCTGCTGGTACATGCTCTGATACTATGAAGAAAGATCACTATGACGAAGGACAACAACCACTTCGTCGTTCTGGTAGCTCTAGTTCAAGCTCTTCTCGTTGACCGGAGGCGCTGACGAAGGTGTACAAACTATTATTCCTACTCCTACTCCTACTCCAACTTCTACCTGTGAAGCCGGAGGGGGCGAAAAGAAAGGAATGATGGAGAAAATCAAGGAGAAGATCCCTGGGATGCACTGAGTGAATGTTTACATTTCAAGTGTGTCGATTTTGACAATTGAAGCCTACACTATTATTTA | |||||||||