| mature miRNA: GGGCGCAGTGGTTTATCGATC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88961033|gb|CI096436.1|CI096436 CI096436 Oryza sativa (japonica cultivar-group) Panicles more than 5cm stage Oryza sativa Jap GGGCGCAGTGGTTTATCGATC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTCATGGTACAGATGGTTCTCATTGATGGATTATTTTGTTTCATGGATAAACAGTATACCAAGGTGTATGATCCTTGGGGAAGAAATGCCTTTGAAACAAAAAACCTATCATCTTCGAAAGATTTTGCTCAGTAGATCTATACAACTCCCTTCCAGCAGAGGAAGTGGAACATCGACACTGGAATAAACCAATTGAACCGCAAAAAAAGAATTAGACTCCTCTGCAGATTGCAAGCCAGGAGGAGTACCTGCACCGATNAAACGATCGAGAGCACTTGGGAGAGTTGGATCAGTGAGCCACTGCGACCCGGGACTGCAAGGTGATGCTCTTCTGGCTGGGCATGGCGAGCATGGCGGTGTGATCCAAGAAATCCTTGAGCTCCACCACGGACTCGAGTATCCTCCTGAGGTCGTCGGCGCACATGAAGCCGGCGGCGCCCAGGCGGCGGACGGCGTAAACGTAGATCGTGAGGCAGCCCTTCCTGAACTTGAACCGGGCCATCTC | |||||||||
gi|86261472|gb|CI017214.1|CI017214 CI017214 Oryza sativa (japonica cultivar-group) green shoot Oryza sativa Japonica Group cDNA GGGCGCAGTGGTTTATCGATC EST sequence (targeted fragment marked with yellow): TCAAAATTAGAGAAGAGTTTGATTTGGGGAATAGTTTTGTGTTTTGTGTTTACACTTTCGACACCCTCTTCTCTCTTAGCCCTCTGGTATTTATACACCATACCAGAACATCATTGGACTGTGACCCATTCTGGCCCACTCACACGGACGTTAGGTTTCTTAGCCCGCGTAGGACGCCGATAGCTTCTCAGCGGATTGCCTTTGTCGATATCTGCTACAGGCAGCGTAACATTCTCCCCCCCTTCAGACTCGGCTTGTCCCCAAGCCGGTGCAGCAGGAAAACGGACCCGAAGAGATTCAGCATCCTCCCAAGTCGCCTCATCCACACCATGGCCAAACCAACGCACCTTGAATTGAGGACGCACGGCAGCTCCAAGCTTGTACAGATGACGCACCAATATCTGCATCGGAACTGAAGAATCCGGAGCCAGTGCAGCAGGTAACTTGACAACCGTCGCAGAATCCGGTGGAGGCGCCTGACGAAGCTGAGATACATGGATAACAGGGTGAATAGAACAACCTGGGGGTAATTGCAATCGGTAAGCCACTGCACCCACTCGAGCAGTTACTTGAAACG | |||||||||
gi|88199671|gb|CI199521.1|CI199521 CI199521 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft GGGCGCAGTGGTTTATCGATC EST sequence (targeted fragment marked with yellow): GGTAACAGTTGGGGCTTCTGTACAATGCGACAAGAATGTCATGGTACAGATGGTTCTCATTGATGGATTATTTTGTTTCATGGATAAACAGTATACCAAGGTGTATGATCCTTGGGGAAGAAATGCCTTTGAAACAAAAAACCTATCATCTTCGAAAGATTTTGCTCAGTAGATCTATACAACTCCCTTCCAGCAGAGGAAGTGGAACATCGACACTGGAATAAACCAATTGAACCGCAAAAAAAGAATTAGACTCCTCTGCAGATTGCAAGCCAGGAGGAGTACCTGCACCGATGAAACGTTCAAGAGCACTTGGGAGAGTTGGATCAGTGAGCCACTGCGACCCGGGACTGCAAGGTGATGCTCTTCTGGCTGGGCATGGCGAGCATGGCGGTGTGATCCAAGAAATCCTTGAGCTCCACCACGGACTCGAGTATACTCCTGAGGTCGTCGGCGCACATGAAGCCGGCG | |||||||||
gi|89188117|gb|CI115366.1|CI115366 CI115366 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo GGGCGCAGTGGTTTATCGATC EST sequence (targeted fragment marked with yellow): GTCCAAACTAGAGAGAGGTTGATTGGGGAATAGTTTCGTGTTCTGTGTTTACACTTTCGACACCCTCTTCTCTCTTAGCCCTCTGGTATTTATACACCATACCAGAACATCATTGGACTGTGACCCATTCTGGCCCACTCACACGGACATTAGGTTTCTTAGCCCGCGTAGGACGCCGATAGCTTCTCAGCGGATTGCCTTTGTCGATATCTGCTACAGGCAGCGTAACATTCTCCCCCCCTTCAGACTCGGCTTGTCCCCAAGCCGGTGCAGCAGGAAAACGGACCCGAAGAGATTCAGCATCCTCCCAAGTCGCCTCATCCACACCATGGCCAAACCAACGCACCTTGAATTGAGGACGCACGGCAGCCCCAAGCTTGTACAGACGACGCACCAATATCTGCATCGGAACTGAAGAATCCGGAGCCAGTGCAGCAGGTAACTTGACAACCGTCGCAGAATCCGGTGGAGGCGCCTGACGAAGCTGAGATACATGGATCACAGGGTGAATAGAACAACCTGGGGGTAATTGCAATCGGTAAGCCACTGCACCCACTCGAGCAGTTACTTGAAACGGTC | |||||||||
gi|88402131|gb|CI614974.1|CI614974 CI614974 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone GGGCGCAGTGGTTTATCGATC EST sequence (targeted fragment marked with yellow): GGAAGACAGGAGACGGTTACTGGAGTTGAGTACTCCACCCACCACACCAAACAAGAGAGAGAAGGGTTGGGGTTGGGGTCACTCTTTCCTTTTCTCTGTTGTTGTTGGCTTGATGATGAGCTGATTCGCATAATTCCAATTCCAATTCCAATTATAATTCCAAGAGGCTTATCATCAACTCAACTGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGGTTGTGAACTGATTTGGGAAGGGAGGGGGAGGAGGAAGGCGATCGATCGGCCACTGGGCCCCTACCCGTGCTGCCCATCTTCCACCCGCCGGTTCCGCTGGA | |||||||||
gi|88241615|gb|CI241464.1|CI241464 CI241464 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat GGGCGCAGTGGTTTATCGATC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTGTCATGGTACAGATGGTTCTCATTGATGGATTATTTTGTTTCATGGATAAACAGTATACCAAGGTGTATGATCCTTGGGGAAGAAATGCCTTTGAAACAAAAAACCTATCATCTTCGAAAGATTTTGCTCAGTAGATCTATACAACTCCCTTCCAGCAGAGGAAGTGGAACATCGACACTGGAATAAACCAATTGAACCGCAAAAAAAGAATTAGACTCCTCTGCAGATTGCAAGCCAGGAGGAGTACCTGCACCGATGAAACGATCAAGAGCACTTGGGAGAGTTGGATCAGTGAGCCACTGCGACCCGGGACTGCAAGGTGATGCTCTTCTGGCTGGGCATGGCGAGCATGGAGGTGTGATCCAAGAAATCCTTGAGCTCCACCACGGACTCGAGTATCCTCCTGAGGTCGTCGG | |||||||||