| mature miRNA: GGGGAACCTGATGGGCCTCCA species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211898968|gb|CO485345.2|CO485345 GQ0207.B3_F19 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0207_F19 5 GGGGAACCTGATGGGCCTCCA EST sequence (targeted fragment marked with yellow): CGAGCTCCGGGAGCGTCTGCAGAGCGGAGCACCACTGCAGGTCAAGACTTTGAAGGCCCGTCAGCTTCCCAACCGAGTCCGGGAGCGTCTGCAGAGCGGAGCACCAGCGCAGATCAAGACTTTGGAGGTGCTTCAGCTTCCCAATGGACTCTGGAACCTGTGAAAGGGGAGCAACAATATGCAATTCCCTCAACAGCAGAGGTGCCTGCAATGTTTACATACATTATTAAAGTTGGTTTGAAGCTGTAAATGTAAACTTTTTGGCATTGTGGTATACGAAGACAATTCTTAAAAAA | |||||||||
gi|225916052|gb|GO367853.1|GO367853 GQ03804.B7P1_F20 GQ038 - Stem - Active growth Picea glauca cDNA clone GQ03804_F20 5', mRNA s GGGGAACCTGATGGGCCTCCA EST sequence (targeted fragment marked with yellow): TGGTGCTCGAAGTGTATTGTAGCCACCAATATTGCTGAGACATCGCTCACTGTTGATGGCATCTTATATGTGATTGATACTGGATATGGAAAGTTGAAAGTCTACAATCCACGAATGGGTATGGATGCTCTTCAGGTTTTCCCTACAAGCAGAGCTGCAGCAGATCAACGTGCTGGTAGAGCAGGTAGGACAGGTCCTGGGACATGCTATCGCTTGTACACTGAGACAGCATATCAGAATGAAATGCTGCCAAATCCGGTGCCTGAAATACAACGTACCAACCTTGGAAATGTTGTTTTACTACTCAAATCATTGAACATTGAAAACCTTTTGGATTTTGATTTTATGGATCCCCCTCCACAGGACAATATTCTCAATTCAATGTATCAGCTTTGGGTACTTGGTGCACTTGATAATGTGGGCAGATTGACTGCTCTTGGAAGAAAGATGGTTGAGTTTCCTCTTGATCCTCCTCTTGCAAAAATGCTATTAATTGGGGAACAACTTGGCTGTGTCAATGAAGTCTTGACTATTGTTTCTATGCTTTCTGTTCCATCTGTTTTTTTCCGTCCTAAAGATAGGGCTGAAGAAAGTGATGCAGCAAGGGAAAAGTTTTTTGTGCCTGAGAGTGATCACTTGACTCTTTTAAATGTGTACCAACAATGGAAATCTAATCAGTATCGGGGAGACTGGTGCAATGATCACTTTTTACAGGTAAAGGGATTGCGCANAGCTCGTGAGGTTCGCTCTCAGCTTTTGGATATCCTCAAAATGCAAAAGATCACTCTGACAACTTGTGGTCATGATTGGGATGTTATCAGGAAAGCAATTTGTTCAGCATACTTTCACAATGCAGCTAGGTTAAAAGGTATTGGTGAATATGCCAACAGCAGGACTGGAATGCCATGTCATCTGCA | |||||||||
gi|211868424|gb|CO485532.2|CO485532 GQ02010.B7_E18 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ02010_E18 GGGGAACCTGATGGGCCTCCA EST sequence (targeted fragment marked with yellow): TAGCTTCCTCACGTATTTTGAAACAAAGTAACTTCTGATCCTCCAACAACCGCTTTGTCCATGAAGGCTTCCCACTGTGCCCACCCACTACATCCAATTTTCGTTGAGAAATTGTATCTTCTAAGCAATATAATGATGTCATCGGCAGTCTTTTTGTTTCAACCTGTGGGGTGTTAATGAAATCAGAAGCTGCAGTAAAATAACAGGTCTCTGCACCTGTGTGACAAGTTGGCCCATCAGGTTTCCCAAGATATATCATAGAATCACGATCACAATCCATAAATATATTTGACACATTTATGAAATTCGAAGAAGTCTCTCCTTTAGTCCACAGAGATGATCTTGATCGGCTGTAGAATGTGGCTTTGCGAGATGTCAATGTTCTATAAACAGCTTCCCTATTTGCAAAGCCTTGCATCAGAATAGCCCCTGTATCGATATGTTGCGCAATTGCAACTACCAAGCCTTTCTCGTCCCACTTTATAGTCTCTAAGAGACTTTCAACCTGTGTTTTGAACAAACCATTCTCCTCCTCCTCCTCTTCTTCTTCTTCTTGCTGACGTTTTTCTTCTTTTTCTTCCGATGCTGCAGCTTTAGCCAATACCGAGCTGGATTTGGAACCGGTCCATCTTGAATAGCAGGGCGTTAATGGACACGATCTACGCAGAAACTTGCAAGAATTTCTATTTGGGCGAAAAAGATTAAGAAGGGATAAATCATGCCCCGAATCGGCAACAAAAGAAGAAAAAGAAACACGACACCGTGTAGAAAGCATAGTGTTGGCCCTATTGTCTTCTCTGCGCTTCAGCAAACACAGGCCAAAAAAACCCTAAACCCTCTTACACCTTTAGAAGAGAGCAGCAAAAAA | |||||||||
gi|211878711|gb|DV984668.2|DV984668 GQ0201.B3_L20 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0201_L20 5 GGGGAACCTGATGGGCCTCCA EST sequence (targeted fragment marked with yellow): GAGTGTTTGACGGAAGTCAATGGCGGACGCTTACTGGAGAGATGGCCGCTCTTTAGGGATTCCTACTCCGGCAAAGCGCGCTCGTGGTGATCTCCCGCCAGCAGGGATATCTGGTGGTCGTGATATTCCTGGTTATTTACCTGACATGGCGGGTCGATCATTTATGCGGGAGTCCAACCCTCCTGGATCTCTGGATTCCCATGCTCGAAACGGGCTTCCATATTCTGCTGGTGGTTTATCATCTGCCGATATTGGTGGTTTGGGAGGCTCCCTTGGCACCAGGTTGGGAGGCAGTGGAGGTTATGGAGGATTGTCAGGTTCCTCGCTTGCTGACTCTGTTTTAATGGGTCAGAGGCCAGGTATTGGAAACGCAGATCCTGGATATGGAGGAAAGTTAGGGAGCCTAGGTTTGGGCTATCAAAGATCAGATGCGCAGGGGTTGAGAGAACCTCTGAGAAGGCCTGATGAGCATCTTCCACCTGATGCATCGAATACCCTCTTTGTTGAGGGTCTTCCTGCTGATTGTACTCGCAGGGAAGCTGCACACATTTTTCGTCCATTCATTGGTTTCAAAGAAGTTCGACTGGTACAAAAGGAGCCTAGACGTCCTGGTGGAGATCCTCTTGTTCTGTGTTTTGTTGATTTTACTGATGCAAGATGTGCTGCAACGGCCTTAGAAGCATTACAGGGGTATAAGTTTGATGAAACTGACCGGGAGTCAACCGGTTTAAGATTGCAATTTGCACGCTTTCCTGGTCCACGTGGGCCTTCTGGTTCTGCTCGTGATGAACCTTTTCGTGGAAATCGTGATCGTGACGACTCTCGCGGTC | |||||||||
gi|211894021|gb|DV989315.2|DV989315 GQ0209.TB_N11 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0209_N11 3 GGGGAACCTGATGGGCCTCCA EST sequence (targeted fragment marked with yellow): ACCAGGTTGGGAGGCAGTGGAGGTTATGGAGGATTGTCAGGTTCCTCGCTTGCTGACTCTGTTTTAATGGGTCAGAGGCCAGGTATTGGAAACGCAGATCCTGGATATGGAGGAAAGTTAGGGAGCCTAGGTTTGGGCTATCAAAGATCAGATGCGCAGGGGTTGAGAGAACCTCTGAGAAGGCCTGATGAGCATCTTCCACCTGATGCATCGAATACCCTCTTTGTTGAGGGTCTTCCTGCTGATTGTACTCGCAGGGAAGCTGCACACATTTTTCGTCCATTCATTGGTTTCAAAGAAGTTCGACTGGTACAAAAGGAGCCTAGACGTCCTGGTGGAGATCCTCTTGTTCTGTGTTTTGTTGATTTTACTGATGCAAGATGTGCTGCAACGGCCTTAGAAGCATTACAGGGGTATAAGTTTGATGAAACTGACCGGGAGTCAACCGGTTTAAGATTGCAATTTGCACGCTTTCCTGGTCCACGTGGGCCTTCTGGTTCTGCTCGTGATGAACCTTTTCGTGGAAATCGTGATCGTGACGACTCTCGCGGTCGCAATCGCCGTTGATTTTACGACTTTCAATAACAGAAAGATTTGCGGGTTGATCGAGCTGTTTTTGAAGGCGCGAGTGCAGAAATCAAGTACCAGTATGTGATGTTGTCGGTATTAGTTTAATGCGGGATGTATTTTGGCCTAATTAGAACTAAAATGGCTAGTGGTTGACGCTGGATGGGTTTCGGTTTTTATACTGGTTAGGTAAATGATTCCAATATACTATGGAACATCATTTTGTCTTTTCAACGATATGGATTCTCCTGCAGCAATAATTTAAGTTTTGGACTAAGCATGTTCAGAGAACTGACAAAATTAATATT | |||||||||
gi|211878687|gb|CO479913.2|CO479913 GQ0181.T24.1_H02 GQ018: Clean ROOTS systems - N treatments Picea glauca cDNA clone GQ0181_H0 GGGGAACCTGATGGGCCTCCA EST sequence (targeted fragment marked with yellow): ATATTGGTGGTTTGGGAGGCTCCCTTGGCACCAGGTTGGAGGGCAGTGAGGTTATGGAGGATTGTCAGGTTCCTCGCTTGCTGACTCTGTTTTAATGGGTCAGAGGCCAGGTATTGGAAACGCAGATCCTGGATATGGAGGAAAGTTAGGGAGCCTAGGTTTGGGCTATCAAAGATCAGATGCGCAGGGGTTGAGAGAACCTCTGAGAAGGCCTGATGAGCATCTTCCACCTGATGCATCGAATACCCTCTTTGTTGAGGGTCTTCCTGCTGATTGTACTCGCAGGGAAGCTGCACACATTTTTCGTCCATTCATTGGTTTCAAAGAAGTTCGACTGGTACAAAAGGAGCCTAGACGTCCTGGTGGAGATCCTCTTGTTCTGTGTTTTGTTGATTTTACTGATGCAAGATGTGCTGCAACGGCCTTAGAAGCATTACAGGGGTATAAGTTTGATGAAACTGACCGGGAGTCAACCGGTTTAAGATTGCAATTTGCACGCTTTCCTGGTCCACGTGGGCCTTCTGGTTCTGCTCGTGATGAACCTTTTCGTGGAAATCGTGATCGTGACGACTCTCGCGGTCGCAATCGCCGTTGATTTTACGACTTTCAATAACAGAAAGATTTGCGGGTTGATCGAGCTGTTTTTGAAGGCGCGAGTGCAGAAATCAAGTACCAGTATGTGATGTTGTCGGTATTAGTTTAATGCGGGATGTATTTTGGCCTAATTAGAACTAAAATGGCTAGTGGTTGACGCTGGATGGGTTTCGGTTTTTATACTGGTTAGGTAAATGATTCCAATATACTATGGAACATCATTTTGTCTTTTCAACGATATGGATTCTCCTGCAGCAGTAATTTAAGTTTGGACTAAGCATGTTCAGAGAACTGACAAAA | |||||||||
gi|270051873|gb|GT739943.1|GT739943 GQ01811.B7P4_B04 GQ018: Clean ROOTS systems - N treatments Picea glauca cDNA clone GQ01811_B GGGGAACCTGATGGGCCTCCA EST sequence (targeted fragment marked with yellow): GTTATTACATTTCTTTGAAGGTTAGTGACAGAGCTCTTTATGCAGCGTGCAATGTGGCCACCTGACCTGACCACTGTTCTAATTATGAACTGCTGTTATATTTTAATACTGGCTTTAGCGTTGGCTTTACTTATTCTTGAACAAAGCCTTGTCCCAGTCGTTGGCGCAGTTGATCGATTGCTGCCGCACTCCATTGCAGTTTGGGACATTGAGATACATCAAGCTCCTTCAACGAGCTCAAATGCTCAACATTGGGCAGCATCTGTAAATTGGAACACCCGCTTAAGTAAAGATGGAGGACCCTTAGGTTCCCAACCGAGTCTGGGAGCGTCTGCAGAGCAGAGCACCGGCGCAGGCTAAGAGTTTGGAGGCCCGTCAGCTTCCCAACCGAGTCTGGGAGCGTCTGCAGAGCGGAGCACCGGCCCAGGTTAAGACTTTGGAGGCCCGTCAGCTTCCCAACCGAGTCTGGGAGCGTCTGCAGAGCGGAGCACCCGCCCAGGTCAAGACTTTGGAGGCCCGTCAGCTTCCCAACCGAGTCTGGGAGCGTCTGCAGAGCGGAGCACAAGAACAGGTCAAGACTTTGGAGGCCCGTCAGCTTCCCAACCGAGTCTGGGAGCGTCTGCAGACCGAAGCACACGCTCAGGTCAAGACTTTGGAGGCCCGTCAGCTTCCCAACCGAGTCTGGGAGCGTCTGCAGACCGAAGCACCTGCTCAGGTCAAGACTTTGGAGGCCCGTCAGCTTCCCAACCGAGTCTGGGAGCGTCGGCAGAGCGGAGCACCCGTGCAGGTCAAGACTTTGGAGGCCCGTCAGCTTCCCAACCGAGTCTGGGAGCGTCTG | |||||||||