| mature miRNA: GGGTCCACATGTCAGTGACCA species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|30974928|gb|CD231463.1|CD231463 SS1_16_D08.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_16_D08_A012 5', mRN GGGTCCACATGTCAGTGACCA EST sequence (targeted fragment marked with yellow): TACTGGTTAAGCACATGTTGATGATGGGTCACTGGCATGTGGGCCCGCTCTTTCTTCCCTCGTCTCCTCCTTCCCTCGTCGCCTTCCCTCTAGCTCTGGGCCTCGGCGGCGTTCGAGGAGCGTTCCGTTGCTTCTGGTTCTTGGGAAGTCGTTGCCAGCGGGCAGCCTTGCCAGGTGCTTGCCAGAATCGGACCCCAGCCGCCGGAATCCGACCTCGTCTCGCTTCTCCTCTCCCCGTGAAGAATCGTGATGCGGAGAACAGCCGCCGCTGCCCTCGTTTTCATTCCCCTCCTCGCTGCGGCGGTGCAGACCTCCTCCCTGCCCTTCATCGTCCTGCACGGGATTGGGGACCAGTGCGCCAACCATGGCGTCGCCAAGTTCACTAAACTTCTCGCCGGTTGGTCCGGCTCCGACGGTCACTGCCTAGAGATCGGCAGAGGGACATGGGACTCTTGGGTCATGCCTCTTCAACAACAGGCTGATATCATCTGCAACAAGGTCAAGGAAATGAAACAACTGGGAGACGGCTACAACATAGTTGGTCTGTCTCAGGGAAACTTGATTGGTCGAGCA | |||||||||
gi|13585549|gb|BG556551.1|BG556551 EM1_38_F09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence GGGTCCACATGTCAGTGACCA EST sequence (targeted fragment marked with yellow): GGAGAACTACAAGCCTGACGAGTGGTCGTTGTGGCGTGTTGACTTCAAGTACAACGAGGAGCTCCGCATGACCTTCATGGCTGCTAACCAGATTGGTGGTTTCTTCAACCGTCTTGAGGCTTCTCGCAAGTACATGTTCGGTGCTGCCGCCGTCTACGGTGTCAACTATGACTGTGTCATCCGCGGTGTCATGTTGATCCGTGGCCAGGAAAGCCACCCTGCGATCGAGGTTGCTCCTGACTGGGAGAGCTACGCATTGACCAAGCTCGACCACACCAAGGAAGAGGACCGCAAGTTCGTCGGTGACATGTGGGCCTGGGATGTTCCTCTTGTCATTGAAGGCAAGGAGCTCCCCTGGGTTGACGGCCACGAGCTCAAATAGATGACCACTCATTGCTAAGCCATTGAAAGATCATGGTTTACTGGT | |||||||||
gi|45970514|gb|CN137145.1|CN137145 OX1_55_A09.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_55_A0 GGGTCCACATGTCAGTGACCA EST sequence (targeted fragment marked with yellow): ACTCGCCAATCCGCCTTCATCGCAACTCGCGACGAGCCGACGACCCAGCCATACAATTCGTCCATCACTCGCGGTCGCGGAGCGGTTCCAATTCCAACTGCACACTCGCGGTCCCGGCGACCCACCCGACCGACCCCCGGAGCGGCCGAGGCCTCGCCTCGCTCACCGACATGTGGGCCCTCAACAACGCCAAGGCCGGCGGACCCTGCCTCACGCCGCGGCACCCTGCGCCGCCCTCCCTCGCGTCGCCGTCGACGGCGGCGGCGGCGGCTGGGCGGAGGTTCTTGAGGCGCAGCCCCGTGTGGGCGCCCCTTGTGGCGGTGCGCGCGTCGGGGGGCACGAGGAAGGACGGTCCCGGCGGTGGCGAGGCCAGCAGCGGCGAGGAAGCCGATAGCAAGGCGTCGTCTTCCGGGCACGATGATGCATCTACCCCAACTGGGGATACCTCTGCTGGGTTGAACCAACCCCATGACGAGACGAAAACAAACAAGCCGATTAATGTTTCTAGCAGCAACTACTGGCGAGATGTCAGGGCAAACCTTGTGCGTCGGGAACAGGAGCTATTAGTGGATCCAAGCACTCCCACAGAGTCAAAGCCATCGTCAGGAGATCCATTACAGCTCCCTCAAAAGTGGGCTCATGCTATTACAATGCCAGAGGCAGGATGTGTTTTGGTTGCTACTGAGGCGCTTGATGATGATAGCATCTTTGAAAGAACCGTCATCTTCATCCTTAGACTTGGTTCAAGAGGTACGTTCGATGGCCCGTTCGGAGTTATCCTGAATCGTCCCCTCTACACAAAGATCAAGCACGTGAATCC | |||||||||