| mature miRNA: GGGTTCACATGTCAGTCACCA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|66920956|gb|CX107804.1|CX107804 BI146A16 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): CTGTCCATGGGTCTGGTCTGGAATTCTTGGGATTGACCCACGCTGTCTGCCCACGCTGTCTGAGCCCACAGTTGCTGTTGCACCTGAAGCAGAGTAGACGAAGGAGACGGAGCTGGAGCTGCTATCAGCCTGTCCTGATCTGCAGTGATCCTGACTTGCTCTCTGCTCGTCTCCGACCTTCTGCGTGTCTGCTTGCCTGCTAGCCTGCCTGCGTGCTGCTGTGTGCTGCTCTGCTGTGCTGATGTGTGTTGACCTGACCTGACCTGACTGTGTGTGTTACCTGCCCTGCTGCTCTGTGCTGTGCTGCTCTGGTCTGTGACTGACNTGACTGTGCTGTGTGCTGTGCTGTGCTGTGCTGTGATGTGACACGGTGTGACACGTGTGCTGTCTTGCTGTGTGTGACTTGACCTGCACTGTGACTGACATGTGACCCTGTGTGTCTGCTCTGATACTGTTCTGGACTGTGCTGACTTGTGACTGTGTTGTACTGTTGTGTGTTTGCACCGGACCCCACCTGGTTGACCTGTGTGCGCACCATTACGCGGTGACCGCTTACCTAATCATCTACAGACCTGTGCTGTGTTGACCTGGAACAGCCCAGGCCAGGAACCCTCTCTGACTGCCCCGACCACCACCGTACAGACCTCTGACACGACATTCCCGACCGCAGCTGACAGCTAGACTTGCTGCCTGCTGCACCCATCCTGCCCTGGCTCTGCTACCTTGACAACCTGCAACGAAACAGAACCGTCCCAATTCTCCGGATCCTAGTACTTACTAATCATTGGACTCACGGCAGTTCATACGCTAACATCAAGTCGACCCGTCGTCCGACACCGCAGGCCAGTAGACCGAGCACTGACCAGCTATCCACGCCCATACAGAAGTATGTCCACCCTTGAACATAATTACACGACGGACAGCGAATCACTCGACCCGAGGAAGAGAGGTAATCAGGCCCGAGTGATGAATTACTATGTGGGCAATACACATACACGCAGATACAATTTAATGGTAAATATGGAGCATGGAATTGCGTCAATACTCAGTAGTCGATTAGTAATATCCATACCACCAATACCTACTAACACACACACAAATATCCTTATCTTATACTAAATACACCAAACACCAAAAACATCACACACACGTTATCACACCTATACCAAAATTTCATCTACACATACAAACAAACACATCAACCAAACCTAACAAAAAACGAATCGCTCCACTATCTACATCATCAACCTACAACACCTCTCACATCCACCTTACATCCCACTCTACAATCCAAAAAACACCACTACTACCCACATTAACCAACAACAA | |||||||||
gi|58679359|gb|CK068046.1|CK068046 70319rsicem_21424.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): GCACGAGGTGGGTGATTGGTTGGCCCGCCGCTCCGCCCGCCCCTCCGCTCCTCGTGGGCCCCTTCGGCCGCGGCCTGCCGCAGCCGCCGCTCCGCCGGCATGCTTCGGCCGACGCCGTCGTTGTCGGCATGCTGCAACGTGATGAGGAAGAAGAGTGAGAGCCAAGTGGGGAGAGGGAGATGACATGCGGGGCCCACGTGGGCCCCACCATTTTTTAACTGACATGTGGGCCCCATTATTTTTAGATTTTTTTTTGTGTGGCTGACATGTGGGCCCATGATTTTTATTATTTTTCCAATATATAATTGCCACGTCATCGCCGCGTCAATGCCACAGGGACGGAGGCCTAGTGAAACAAGCCACGTAGGCGCCACGTCAGCCAAAACCGCCTTCAAAACCGCTAAGGGACCTTGTACCGGTTTTGATAGTTCGAGGACCGGTTGTATCTGGTTTTGGGGTTTAAGGACGAGAATCGGATTCGGTGTAAAATTAAGGGACCTCAAATGAACTTATTACAGGAAGGAATAAGGGCAGGGTTGGGTTGGGCCATGTAAAATAAGGGTTACGATGGGCTGGACACTGTAGCTCAAAATGGGGTTCAGCCCATGGGCAGTAAAAAAGGGTCTCCTTTGTGGGAGAACCCACAGCG | |||||||||
gi|87020723|gb|CI267444.1|CI267444 CI267444 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTGGCCTAATTTGTTAAGCCTCACGTATTATTTTTTCATGAATCTATGGTATTAATCATATGGTAGAAAGATGCGCATGCATGTCTTAGGGATTGGGGTCCTCTGACGTGAAGTCAGAGAGACGTGGTGACTGACATGTGAACCCCACCACTCGCGGACCCACTTGTTAGTGACCATGTCACGGAGCAGTTCACGTCAGAGGATCCAGTTCCGTCTTACAGACACTCAAAAAAAAAAAAAAAAAAAAACTAAGCCCGTTTAACAAGCTGAGCACGGAGCGGCTTTGCCATCACAGTGGTGAACTCATTCTTCTCGGTCAAGTCCACCTCGTCGCCGGCCACCTCCTTCCACTCGAACTCCTTCACCAAATTCGCCACGAAATACTCCAGGTGTAGCATGGCAACGCCGAGCCCGGCACAGATCCTCCTCCCGACGCCGAACGGCATCATCCGGACCTCCCGGCTGCCCGTCACGTCCACTCCCTCGCCGTCGCCGCCGGCGAGGAACCGCTC | |||||||||
gi|86594256|gb|CI251128.1|CI251128 CI251128 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): TTTTTTTTGTTGGCCTAATTTGTTAAGCCTCACGTATTATTTTTTCATGAATCTATGGTATTAATCATATGGTAGAAAGATGCGCATGCATGTCTTAGGGATTGGGATCCTCTGACGTGAAGCCAGAGAGACGTGGTGACTGACATGTGAACCCCACCACTCGCGGACCCACTTGTTAGTGACCATGTCACGGAGCAGTTCACGTCAGAGGATCCAGTTCCGTCTTACAGACACTCAAAAAAAAAAACTAAGCCCGTTTAACAAGCTGAGCACGGAGCGGCTTTGCCATCACAGTGGTGAACTCATTCTTCTCGGTCAAGTCCACCTCGTCGCCGGCCACCTCCTTCCACTCGAACTCCTTCACCAAATTCGCCACGAAATACTCCAGGTGTAGCATGGCAACGCCGAGCCCGGCACAGATCCTCCTCCCGACGCCGAACGGCATCATCCGGACCTCCCGGCTGCCCGTCACGTCCACTCCCTCGCCGTCGCCGCCGGCGAGGAACCGCTCAGGGATGAACTCCATCGGCTTCTCCCACTCCCTCTCGTCCCTTCCCATCTCGGCCACCATG | |||||||||
gi|86497321|gb|CI139954.1|CI139954 CI139954 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): GATGCGCATGCATGTCTTAGGGATGGGGATCCTCTGACGTGAAGTCAGAGAGACGTTGTGACTGACATGTGAACCCCACCACTCGCGGACCCACTTGTTAGTGACCATGTCACGGAGCAGTTCACGTCAGAGGATCCAGTTCCGTCTTACAGACACTCAAAAAAAAAAAAAAAAAACTAAGCCCGTTTAACAAGCTGAGCACGGAGCGGCTTTGCCATCACAGTGGTGAACTCATTCTTCTCGGTCAAGTCCACCTCGTCGCCGGCCACCTCCTTCCACTCGAACTCCTTCACCAAATTCGCCACGAAATACTCCAGGTGTAGCATGGCAACGCCGAGCCCGGCACAGATCCTCCTCCCGACGCCGAACGGCATCATCCGGACCTCCCGGCTGCCCGTCACGTCCACTCCCTCGCCGTCGCCGCCGGCGAGGAACCGCTCAGGGATGAACTCCATCGGCTTCTCCCACTCCCTCTCGTCCCTTCCCATCTCGGCCACCATGAAGTTCACCGTCGCGCCCTTGGGGATGAGGTACCCGCCGACCTCGACGTCCTCCGCCGCCTTGTGCGGCAGCACGAAGTGGGCCGGCGGGTGCTTGCGGAGGCCCTCGAGGATGACGGCCTTCAGGTACGGCATGTCGTGGGTGTCCTCCTCGGTGATCTCGTCGTCG | |||||||||
gi|86505052|gb|CI147685.1|CI147685 CI147685 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTCCTGAATCTATGGTATTAATCATATGGTAGAAAGATGCGCATGGAGTGTCTTAGGGATTGGGATCCTCTGACGTGAAGTCAGAGAGACGTGGTGACTGACATGTGAACCCCACCACTCGCGGACCCACTTGGTTAGTGACCATGTCACGGAGCAGTTCACGTCAGAGGATCCAGTTCCGTCTTACAGACACTCAAAAAAAAAACTAAGCCCGTTTAACAAGCTGAGCACGGAGCGGCTTTGCCATCACAGTGGTGAACTCATTCTTCTCGGTCAAGTCCACCTCGTCGCCGGCCACCTCCTTCCACTCGAACTCCTTCACCAAATTCGCCACGAAATACTCCAGGTGTAGCATGGCAACGCCGAGCCCGGCACAGATCCTCCTCCCGACGCCGAACGGCATCATCCGGACCTCCCGGCTGCCCGTCACGTCCACTCCCTCGCCGTCGCCGCCGGCGAGGAACCGCTCAGGGATGAACTCCATCGGNTTCTCCCACTCCCTCTCGTCCCTTCCCATCTCGGNCACCATGAAGTTCACCGTCGCGCCCTTG | |||||||||
gi|88425073|gb|CI562388.1|CI562388 CI562388 Oryza sativa (japonica cultivar-group) root of seedling gamma-irradiated (4min), aft GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): GCTTCAAAAATAGCCAATTTCGTAGCATTTGTAACGTCTGGGTTACCGACTAATAATAACAAAAAGAAAAAAAATCATTCTTCAAAAACAACTATTCAAAACTTCCATCAACAATCCAGATCAGCATCCTTCGAGGTCGAAGTCATGTGACTTTGTCACTAACATGTGAGCCCGATGATTCCTGAGCCCACATGTTAATGACAAAGGCAACGTGCATTCGATGGCGGAGAACCTCAATCCCATCCATCCATCTTACCGTGAGGTTTTCCCCCTTTCAGCTCAGCAGTGAGCCCTCCATCAACAAATCGATCATGGCCACCGTGCGCGCTCTTCGCCTNACTCCAGCCGTCGTGGCAGTGGCCGGTGGTGGTCGGAGACCAGCGGCGCCGAGCACGTCCTGAT | |||||||||
gi|86597931|gb|CI276717.1|CI276717 CI276717 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): CATGATCTATGGTATTAATCATATGGTAGAAAGATGCGCATGCATGTCTTAGGGATTGGGATCCTCTNGACGTGAAGTCAGAGAGACGTGGTGACTGACATGTGAACCCCACCACTCGCGGACCCACTTGTTAGTGACCATGTCACGGAGCAGTTCACGTCAGAGGATCCAGTTCCGTCTTACAGACACTCAAAAAAAAAACTAAGCCCGTTTAACAAGCTGAGCACGGAGCGGCTTTGCCATCACAGTGGTGAACTCATTCTTCTCGGTCAAGTCCACCTCGTCGCCGGCCACCTCCTTCCACTCGAACTCCTTCACCAAATTCGCCACGAAATACTCCAGGTGTAGCATGGCAACGCCGAGCCCGGCACAGATCCTCCTCCCGACGCCGAACGGCATCATCCGGACCTCCCGGCTGCCCGTCACGTCCACTCCCTCGCCGTCGCCGCCGGCGAGGAACCGCTCAGGGATGAACTCCATCGGCTTCTCCCACTCCCTCTCGTCCCTTCCCATCTCGGCCACCATGAAGTTCACCGTCGCGCCCTTGGGGATGAGGTACCCGCCGACCTCGACGTCCTCCGCCGCCTTGTGCGGCAGCACGAAGTGGGCCGGCGGGTGCTTGCGGAGGCCCTCGAGGATGACGGCCTTCAGGTACGGCATGTCGTGGGTGTCCTCCTCGGTGATCTCGTCGTCGCTGGTC | |||||||||
gi|86497743|gb|CI140376.1|CI140376 CI140376 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTGGTAGAAAGATGCGCATGCATGTCTTAGGGATTGGGATCCTCTGACGTGAAGTCAGAGAGACGTGTGACTGACATGTGAACCCCACCACTCGCGGACCCACTTGTTAGTGACCATGTCACGGAGCAGTTCACGTCAGAGGATCCAGTTCCGTCTTACAGACACTCAAAAAAAAAAAACTAAGCCCGTTTAACAAGCTGAGCACGGAGCGGCTTTGCCATCACAGTGGTGAACTCATTCTTCTCGGTCAAGTCCACCTCGTCGCCGGCCACCTCCTTCCACTCGAACTCCTTCACCAAATTCGCCACGAAATACTCCAGGTGTAGCATGGCAACGCCGAGCCCGGCACAGATCCTCCTCCCGACGCCGAACGGCATCATCCGGACCTCCCGGGTGCCCGTCACGTCCACTCCCTCGGCGTCGCCGCCGGCGAGGAACCGCTCAGGGATGAACTCCATCGGGTTCTCCCACTCCCTCTCGTCCCTTCCCATCTCGGCCACCATGAAGTTCACCGTCGCGCCCTTGGGGATGAGGTACCCGCCGACCTCGACGTCCTCCGCCGCCTTGTGCGGCAGCACGAAGTGGGCCGGCGGGTGCTTGCGGAG | |||||||||
gi|66921910|gb|CX108758.1|CX108758 BI152C22 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): GTCGACCCACGCGTCGGGACGCGTCGCGGATGGCGTCGGCGTGGTACCGCGTGACGTACCACCCAGACCGCCGCCGCGGGAAGCGGTTCTGGAGCTTCCCGTGGATCGCCTGCGACAACCTGCTGGCGATCAAGGCGTCGAGCCAGCTCAGGCGGCGGCGGCAGAAGGACGATGACTCCACCGCGGTGGTGCAGATGGACTGCAGCGCCTGATGTGGCAGAGGATTCTCTGACTTTGAGTGACTGACATGTGGGCCTGCTGGATAAGGGATCCATGGGTCAGTGACAAGTTAGAGGGAAATAAATTAGAGGTTCTCTGACGCGCCGTCCTAAGTGAACTTTCAACTGCACAGTTCATTGCTGTGCGCCTGTGCCTGTACGCTGTACAAATCTGGTTCGACTAATCTTAGCTGAGCTGAACAGCAGAGCTCCGGCTCGCAACTTGGAAGAGGAAAGAGTTTGATGATGAACACCTACGTAGAGTAAAAGTTCCTCTTCCTAAAAA | |||||||||
gi|88246960|gb|CI246809.1|CI246809 CI246809 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): TTTTGCACCAAATTGTGTTGGCCTAATTTGTTAAGCCTCACGTATTATTTTTTCATGAATCTATGGTATTAATCATATGGTAGAAAGATGCGCATGCATGTCTTAGGGATTGGGACCCTCTGACGTGAAGTCAGAGAGACGTGGTGACTGACATGTGAACCCCACCACTCGCGGACCCACTTGTTAGTGACCATGTCACGGAGCAGTTCACGTCAGAGGATCCAGTTCCGTCTTACAGACACTCAAAAAAAAAAAAAACTAAGCCCGTTTAACAAGCTGAGCACGGAGCGGCTTTGCCATCACAGTGGTGAACTCATTCTTCTCGGTCAAGTCCACCTCGTCGCCGGCCACCTCCTTCCACTCGAACTCCTTCACCAAATTCGCCACGAAATACTCCAGGTGTAGCATGGCAACGCCGAGCCCGGCACAGATCCTCCTCCCGACGCCGAACGGCATCATCCGGACCTCCCGGCTGCCCGTCACGTCCACTCCCTCGCCGTCGCCGCCGGCGAGGAACCGCTCAGGGATGAACTCCATCGGCTTCTCCCACTCCCTCTCGTCCCTTCCCATCTCGG | |||||||||
gi|89183453|gb|CI046018.1|CI046018 CI046018 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTTCATGAATCTATGGTATTAATCATATGGTAGAAAGATGCGCATGCATGTCTTAGGGATTGGGATCCTCTGACGTGAAGTCAGAGAGACGTGGTGACTGACATGTGAACCCCACCACTCGCGGACCCACTTGTTAGTGACCATGTCACGGAGCAGTTCACGTCAGAGGATCCAGTTCCGTCTTACAGACACTCAAAAAAAAAAAAAAAACTAAGCCCGTTTAACAAGCTGAGCACGGAGCGGCTTTGCCATCACAGTGGTGAACTCATTCTTCT | |||||||||
gi|29675471|gb|CB671746.1|CB671746 OSJNEe05H12.r OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe05H12 3', mRNA sequence GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): TACATGGACCCGGTGACGGAGACGCCGAGGGAGGGGACGTCGGAGCTCTGGGACGTGATCAACCTCACCGACGACAACCACCCGCTTCACGTCCACCTGGCGCTGTTCGTGGCGCTGGAGCAGAGGTCGCTGCGGGACGTCGACGACCTCAAGGAGTGCATGATGGCGCGGGGCAGCGGCGGCGGCGGCGCGGACGCGTGCGGGCTGGAGCGGCACCTCGCCGGCGGGAGGAAGCACGTGGTGCCGAAGCAGGAGCGCGGGTGGAAGAACGTGTTCAAGGTGCGGCCGGGCACGGTGACGAGGCTGCTGGTGCGGTTCCGGCCGCTGTCGCCGCCGGACAGCCGCCGCTTCCCCTTCGACGTCGCCGCCGGCCCCGGCTACGTCTACCACTGCCACATTCTGGACCACGAAGACAACGAGATGATGAGGCCGATGAAGATTGTGCGCTAGTACGTGTCCATAGGAATTATGTATGCACTTCAGTAACATAATTTTGTGCCATACTCCTACATAGGATTGGGATCCTCTGACGTTCTGACGACGTGGTGACTGACATGTGAGCCCCACCGCTTGTGGGCCCACCTGTCAGTGACCACGTCCGTGTGCAGTTCACGTTAGAGGATCCGGTTCCTCCTATATATGTGTATCTAACGCACGTGAACATACACATGTGCATTTCAAAGCCAAAAAAAAGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTC | |||||||||
gi|29624747|gb|CB629758.1|CB629758 OSIIEb06D24.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb06D24 5', mRNA sequence GGGTTCACATGTCAGTCACCA EST sequence (targeted fragment marked with yellow): GTTTACAATACCATCGCACGTGTGATTGACATGTGGGCCCCGTTCCAAAGTGTCATTCTCACATGCAATGGTATTTACATCCTTGTGATACTCGCCTATTTTTCTCAATGAATGATTTTCATAACATTTGGTATCTGAGCAGTTGATTCATGGCATTTGGTATCTGAGCAGTTGATCCTGCACTCCCTCTACTGCTAATTATCCCTTTGATAAAGCCTTGGATGTATGCAGAATGCGCAAATGGCCATGCCATGGCTGCCACTATGTTGGGATTTGAGGATTCCTGAGTTTGACTTATTGCATGTCTCGATTTCCTTTAATGTGCCAATAAGTTATATACAACATTAAGATGAATTTACACAATAGCATGAATAAACAAAGACAAGCTTCTATAATTTTTTGGTCACATATGGTCGAATTCGGCAACCAAAGTTTACATGTTTTCCTATATGTCATGGAATATGGTTCAATATATTTTTCCTGTGAAATTCCTACTAAATGAAACCAATCAGGGGTTCAGGACTAATAGAGACCCCCAGTGTGTTACAGAAGAGCATGAATAAATAAATATAAATTTCTGTAAAATTTGGCCAGATATGGTCGAATTTGGCAACAAAGTTTATATGTTATCCTATATGTCATGGTACATGGTTTACTATTTTTCTTTTTGTAAAGTTTCTACTAGTTGAAACCAATCAGGGTTTCAGCCTTTCAGGACTCAGAGAGTACCCCAGTGTGTTAAATACTTCAGTAAGCTTCAAGCAAGTGAGATGTCTCATATTATTTCGTTTTTCACTTTGGCTAGAAATTCGATTTATCATGACGGGAGCTGATTTTTATCTTGTTTCATTGATTATCAAATGTATAAAATGTGATATTGCTTGTGCATTACATGCTTTCT | |||||||||