| mature miRNA: GGTACCACCACTCCATCATC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18017305|gb|BI136377.1|BI136377 F067P40Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): ATGGTCCTGAATACCACGTCTCACAGATTGCTGATGCAGTGGTGGTAGCAAGATATATTGGAGCAACTCTCGTACTTCCTGACATTAGGGGAAGCAAACCAGGAGATGAAAGGAAATTTGAAGAAATATATGATGTTGATAAATTTGTGAAAAGCCTGGATGGGGTGGTTAAAGTAGTTAAAGGTCTGCCTGATGATGTATCGATTCGAGATTTTGCTGTTGTCAAGGTCCCTAATCGAATTTCAGATGATCACATTGCTGAGCAAATCAAACCAGTCTTTAAAACAAATAGCAACATAAGACTGGCTACTTTCTTCCCTTCAGCTAAATATGAGAAAGACCACAAAAACAAGTGCCAGTGATTCAGTAGCATGTTTGGCGATGTTTGGAACTTTACAGTTGCAGCCAGAGGTTAATGAAGTGGTTGACTCCATGATTGAGAGGCTAAGAACTTTGAGTCGCAAGTCTAATGGACAATTTATTGCCG | |||||||||
gi|73886493|gb|DT489231.1|DT489231 WS02538.B21_K09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_K09 3', mRNA sequence GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): CGCCAGGTCATAAGGGCAATTTCCGGGTGTAGAAGGGAAGCAGTGGGATTAGAAGAAGATAACAGAGCTTTAATGGAAACAAGAATCCAACCGCTATCTTTGAGGTTTGATGAGAAGATTTCTATTGAATCCAAACTCAACGGATTCAATGGTTTTCGAGGAGTTCTGTATGCAATGAGAAACGTAAGCTCTTTGCTACTAATGATCTTGCTCTATGGACTGGTCTATTGTTGGCCAGAATCAAGTTTTCTGCGAGGAGGGTACGAAGGGTGCTTGTTTTTTGGATCAGCTTTCATGATCTCAACAGGAAGATTGCAGCAGAGAGTAGCAGCAGAGATAAACCAGATAAATGGGAGGCCAGGGATTCTGCTTTACGAGTTCAGGAGATCAAAGATGGCCATGGAGGAGCTCAGAGGGGAGCTTGAGAGAAAGTGTGGACAAGGAGGAGCTGTAGAGTGGGAAACAGAGGTGGGGATGAGAGAAAGAGTGGACAACTTAAGAGGGTGTTTTGGGGTGTTGAGATCTGGAGCTGAAAATATTATTGGGCAGCTTGATGATTTCTTTGATGAGATTGTTGAAGGAAGGAAGAAGCTTTTGGACTTTTGCAGTCATAGGTAGGTAGGAAGAGAGAGAGAGAAAAAAAGAAGAAGAAATAGAACGGTTGAGAATTAAAAAAAAAAAAATACAAGGTAGATGAAGCAGTTGTTGGGGTGGTTGTACCTTTAAGCCTTCTCTTCTCTATTTATTTTTTCTCCTTTTCCTCTTAATTTTCATATATTTTTCCTTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24073978|gb|BU882454.1|BU882454 UM77TB10 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): GGTTTGTTCCGGAGGACGCCACCATTGTCGGGAATACTTGCTTGTATGGGGCTACGGGCGGTCAAGTATTTGTCAGAGGGAAAGCTGGGGAGCGGTTTGCTGTGAGAAACTCACTTGCTGAAGCTGTAGTTGAAGGCACTGGAGACCATTGTTGTGAGTACATGACTGGTGGTTGTGTGGTGGTACTTGGAAAAGTGGGTAGAAGTGTAGCTGCTGGGATGACCGGAGGTTTGGCGTACATGCTTGATGAGGATGACACTTTGATGCCCAAGGTAAATAAAGAAATAGTGAAGGTCCAAAGAGTGACTGCTCCTGTTGGCCAGATGCAGCTAAAGAGCCTTATTGAAGCTCATGTTGAAAAAACCGGAAGCGGCAAAGGCGCTGCTATCCTGAAGGAGTGGGACACATATCTACCGCTCTTTTGGCAGCTAGTACCACCCAGTGAAGAAGACACCCCAGAGGCTTGTGCATCATTCGAGGCAACCAGTGCTGGGCAAGTGACCTCATTCCAATCTGCATAAGCCTACCGATGCTAGAAAACCCTCTAGGCCCACCCGGAAAAACCCC | |||||||||
gi|73892221|gb|DT494959.1|DT494959 WS01119.BR_O21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01119_O21 5', mRNA sequence GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): GAGCTTTCCATTTCAGCTTCGTCTCCACCTACTCATTTACACCACCTGCACCAAATATGCTTTAACATAACAAAACACACAAACCCCATATAATTAGGGCCTTAAAAAAAAGAACTTGTTCACTTGTTGTCAACTAAAACCTCTCTCTTTATTCACATTAACTGTAGTTAGAGAGCAAGAATGGGTGTGGATTTGAGACAAGTGGTTGCCGGGGTGCTGACGCTAACTATGTTTGTGATGCTTGGTAACATGATCAAGAGAGACCATTTTGATTCTGTTGAAGGGAAATTTCCAGGAGTTAGGGACGTCGAGTTTGATAGCGAGAAGGTTTCAGATCAGGGTCTTGTGACATTTTCCAAAAAGAGTACAAATGGGCCATGGATTGAGAGCGGCCAAGAGCTAAAACCATGTTGGAAAGAGTCAACTTTAGATGAGGTAGAGCCAAAAGGGTTTGTCACTTTGTCATTAACTAATGGTCCTGAGTACCACGTCTCACAGATTGCTGATGCAGTGGTGGTAGCAAGATATATTGGAGCAACTCTCGTACTTCCTGACATTAGGGGAAGCAAACCAGGAGATGAAAGGAAATTTGAAGAAATATATGATGTTGATAAATTTGTGAAAAGCCTGGATGGGGTGGTTAAAGTAGTTAAAGGTCTGCCTGATGATGTATCGATTCGAGATTTTGCTGTTGTCAAGGTCCCTAATCGAATTTCAGATGATCACATTGCTGAGCAAATCAAACCAGTCTTTAAACAAATAGCAACATAAGACTGGCTACTTTCTTCCCTTCAGTAATATG | |||||||||
gi|52396425|gb|CV236638.1|CV236638 WS01224.B21.1_N11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01224_N11 3', mRNA sequence GGTACCACCACTCCA-TCATC EST sequence (targeted fragment marked with yellow): ACTAGTTTAATTAAATTAATCCCCCCCCCCCGACAGGACAGAATTATTCAGATCCTGGTAGGTACTAACCAGTAAGCGAAACTTGAAATTCCGCATCTTTTTTTTCCCCACAATTTCGCCAAAGAATCTGCAATCAATCAATCGCCAAGCGAGAAAATCTGTACAATTATCGTAATTATACACTCGATCAATCCAATTTCTATCGTATAAAAAAAATGCCTTACTGGAGAGTCATGGAGGTGGAGCCACCAAGTCCGTTAAGATACCTAATCGGCGCAGCATTAATGATGATTGGAGTGGTGTTACCCGTTGGTTACATGATGTTTCGTAACAAGCGGGGTCCTTTTTCTTCCTCTTACTCCAAACAGACGGCAAAGTTTTGATAGAGTGGTAGTGATTGAAAGAGAGAGGGAGATCTGGTGCTGGATGAGTTGAAGAGTTTGAAGAAGATGCAAGAAAAAGATGAGGTATTTTTTGACAGATTGTGCAAATACAAATGTAATTGACAGAAACTCTAATTCTGTTATTAATATTTTCTTTTGGGAAAAAAAAAAAAAAAA | |||||||||
gi|24073688|gb|BU882164.1|BU882164 UM73TE02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): GGAGGAGAGTTGGTCGTAACTCCCGTGGAGAACCTGGGTTTGTTCCGGAGGACGCCACCATTGTCGGGAATACTTGCTTGTATGGGGCTACGGGCGGTCAAGTATTTGTCAGAGGGAAAGCTGGGGAGCGGTTTGCTGTGAGAAACTCACTTGCTGAAGCTGTAGTTGAAGGCACTGGAGACCATTGTTGTGAGTACATGACTGGTGGTTGTGTGGTGGTACTTGGAAAAGTGGGTACAAATGTACCTGCTGGGATGACCGGAGGTTTGGCGTACATGCTTGATTAGGATGACACTTTGATGCCCAAGGTAAATAAAGAAATAGTGAAGGTCCAAACAGTGACTGCTCCTGTTGGCCATATGCAGCTAAAAAGCCTTATTGAAGCTCATGTTGAAATAGCCGTGAAGCGGCGAAGGCGCTGCTATCCTGAAGGATTGGGACACATATCTACCGCTCCTCTGGCACCTAGTACCACCC | |||||||||
gi|73867918|gb|DT470656.1|DT470656 WS01210.BR_A13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01210_A13 5', mRNA sequence GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): GCTGTTTGTGGGCGTATAGCTGGTGTGGTTGCAAAGAAATATGGCGACACTGGTTTTGCTGGGCAGCTGAACATAACGTTTACCGGGAGTGCAGGGCAGTCGTTTGCATGCTTTTTGACACCTGGAATGAACATTCGCCTAATAGGAGAGGCTAATGATTACGTGGGGAAGGGTATGGCTGGAGGAGAATTGGTCGTAACTCCTTGGAGAACACTGGATTTGTTCCTGAGGATGCAGCTATTGTCGGGAATACTTGCTTGTATGGGGCTACAGGTGGCCAAGTATTTGTCAGAGGGAAAGCTGGGGAGCGGTTTGCTGTCAGAAACTCACTTGCTCAAGCTGTAGTTGAAGGCACTGGAGACCATTGTTGTGAATACATGACTGGTGGTTGTGTGGTGGTACTTGGAAAAGTGGGTAGGAATGTAGCTGCTGGGATGACTGGAGGTTTGGCTTACATTCTTGATGAGGATGACACTTTGATGCCCAAGGTAAATAAAGAGATAGTGAAGGTCCAAAGAGTAACTGCATCTGTTGGCCAGATGCAGCTAAAGAGCCTTATTGAAGCTCACGTTGAAAAAACCGGGAGCAGCAAAGGCGCAGCTATCCTGAAGGAGTGGGACACAAATCTACCACTCTTTTGGCAGCTAGTAC | |||||||||
gi|52400136|gb|CV238455.1|CV238455 WS0126.B21_L16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0126_L16 3', mRNA sequence GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): TCGGAGGAGGTGGTGGTGGTACCGTTGCCAAGGATGCCCTTGGAAATGATATCGTTGCAGAGCAATGGCTTAACACTCATGGCCCTGGTGACCGAACCCTTTCTCAAGGATTGAAGGGAGATCCAACCTACCTTGTTGTGGAGAAAGATAGAGTTCTTGCAACTTATGGAATTAATGCAGTCTGCACACACCTTGGGTGTGTCGTGCCCTGGAATCAAGCTGAGAAGAAGTTCATCTGCCCCTGCCATGGATCACAGTACAATGACCAAGGAAGAGTTGTCCGAGGACCTGCTCCTCTGTCATTGGCACTGGCTCACTGCGACGTAGACGACGGCAAGGTGGTCTTTGTTCCATGGGTTGAAACAGATTTCAGAACCGGAGATGCTCCATGGTGGTCTTAAGCCTCTTGTTCAATCAATCATCAAATGTTTCATATATTCAAGACGCGAATCGGTTTGTTTTGCAACAATGCCAAAACATCCTTTGTCATAGAGGCATGCAATGTGAATTGGAGCTCATAAGATGTAAGGATAACCATATGATTTAAGCATGGCTAATCTTGTGATGCTTGACAATATATTCTTTATACCCAAAAAAAAAAAAAAAA | |||||||||
gi|18018988|gb|BI138040.1|BI138040 F097P51Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): ATGGTCCTGAATACCACGTCTCACAGATTGCTGATGCAGTGGTGGTAGCAAGATATATTGGAGCAACTCTCGTACTTCCTGACATTAGGGGAAGCAAACCAGGAGATGAAAGGAAATTTGAAGAAATATATGATGTTGATAAATTTGTGAAAAGCCTGGATGGGGTGGTTAAAGTAGTTAAAGGTCTGCCTGATGATGTATCGATTCGAGATTTTGCTGTTGTCAAGGTCCCTAATCGAATTTCAGATGATCACATTGCTGAGCAAATCAAACCAGTCTTTAAAACAAATAGCAACATAAGACTGGCTACTTTCTTCCCTTCAGTAAATATGAGAAAGACCACAAAAACAAGTGCCAGTGATTCAGTTGCATGTGTGGCGATGTTTGGAACTTTACAGTTGCAGCCAGAGGTTAATGAAGTGGTTGACTCCATGATTGAGAGGCTAAGAACTTTGAGTCGCAAGTCTAATGGA | |||||||||
gi|52392738|gb|CV234805.1|CV234805 WS01216.B21_G06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01216_G06 3', mRNA sequence GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): CGGAGGAGGTGGTGGTGGTACCGTTGCCAAGGATGCCCTTGGAAATGATATCGTTGCAGAGCAATGGCTTAACACTCATGGCCCTGGTGACCGAACCCTTTCTCAAGGATTGAAGGGAGATCCAACCTACCTTGTTGTGGAGAAAGATAGAGTTCTTGCAACTTATGGAATTAATGCAGTCTGCACACACCTTGGGTGTGTCGTGCCCTGGAATCAAGCTGAGAAGAAGTTCATCTGCCCCTGCCATGGATCACAGTACAATGACCAAGGAAGAGTTGTCCGAGGACCTGCTCCTCTGTCATTGGCACTGGCTCACTGCGACGTAGACGACGGCAAGGTGGTCTTTGTTCCATGGGTTGAAACAGATTTCAGAACCGGAGATGCTCCATGGTGGTCTTAAGCCTCTTGTTCAAGCAATCATCAAATGTTTCATATATTCAAGACGTGAATCGGTTTGTTTTGCAACAATGCCAAAACATCCTTTGTCATAGAGGCATGCTATGTGAATTGGAGCTCATAAGATGTAAGGATAACCATATGATTTAAGCATGGCTAATCTTGTGATGCTTGACAATATATTCTTTATACCTAAATTCTATTGCAAAAAAAAAAAAAAAA | |||||||||
gi|52497472|gb|CV244497.1|CV244497 WS0254.B21_N06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0254_N06 3', mRNA sequence GGTACCACCACTCC-ATCATC EST sequence (targeted fragment marked with yellow): GCGGCACAGAACTCAGATCCTGGTTGGAGTCCCAACTCCTGACTCGTAAGCAAAACTTTGAAATTTCGCATCTCCTTTTCACTATATCCTCAAAGAAACTGCAATCGATCAAGCAAGTCTCCAGTCGTTGAAGTACGATTATCGTAATTACCCAGATCGTATAAATTAGAAAATGCCTTACAGGAGAATCATGGAGGTAGAGCCGCCGAGTCCGTTAAGGTACATAATCGGCGCAGCAATAATGATGATCGGAGTGGTGTTACCCGTCGGTTACATGATGTTTCGTAACAAGAGGGGTCCTTCTTCTTCTTCCACTTACTCCAAACAGACGGCAAAGTTTTGATAGAGATTTAAAGAGAGGATTTTTATACAATAGAAATTGCGCTGTCTGGGTTAAGTTTGAAGGAGTTGCAAGAAGAAAAGGATGAGGTGCATTGACAGAAAATCTAATTCTGTTATATTTGTTATTGCTGGGGAACTCTGAGTTTTATAAAATGGAACTGAATGTGGTTTGATTCTAAGTTTTTGATCTAGTAAATATGCTAATGCCATTTCAAACTCGTCTTTGTTCGTTGGATGAATATGTGTAAGAAGGACAGACACTTGATTGAATTTGTCTTCTTGTTCTGTTTTTAGCCTTATCATCTAGGGAACCTGCGTATGAGAATACGCTACGGGTTATGTGTTTTTGTGGTGAATTTCAAATTTGCATGTAAACAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886240|gb|DT488978.1|DT488978 WS02537.B21_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_P13 3', mRNA sequence GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): AGCAAGAGTGGCATGTTCTCTCCTACACATGCGGTGTTTGTGAAACCAACAAGGACAAATATGGTGTTAAAGGAGAGAGGAATGAGAATTTCATGCCAGGCTACAAGTGTTCCTGCTGATGATAGAGTGCCTGACATGGGTAAGAGGGAGCTTATGAATCTGCTTCTTTTGGGTGCTCTTTCACTCCCCACTGCTGGCATGTTGGTTCCTTACACCTATTTCTTTGTCCCTACTGGGCTCGGAGGAGGTGGTGGTGGTACCGTTGCCAAGGATGCCCTTGGAAATGATATCGTTGCAGAGCAATGGCTTAACACTCATGGCCCTGGTGACCGAACCCTTTCTCAAGGATTGAAGGGAGATCCAACCTACCTTGTTGTGGAGAAAGATAGAGTTCTTGCAACTTATGGAATTAATGCAGTCTGCACACACCTTGGGTGTGTCGTGCCCTGGAATCAAGCTGAGAAGAAGTTCATCTGCCCCTGCCATGGATCACAGTACAATGACCAAGGAAGAGTTGTCCGAGGACCTGCTCCTCTGTCATTGGCACTGGCTCACTGCGACGTAGACGACGGCAAGGTGGTCTTTGTTCCATGGGTTGAAACAGATTTCAGAACCGGAGATGCTCCATGGTGGTCTTAAGCCTCTTGTTCAATCAATCATCAAATGTTTCATATATTCAAGACGCGAATCGGTTTGTTTTGCAACAATGCCAAAACATCCTTTGTCATAGAGGCATGCAATGTGAATTGGAGCTCATAAGATGTAAGGATAACCATATGATTTAAGCATGGCTAATCTTGTGATGCTTGACAATATATTCTTTATACCTAAATTCTATTGCATTATCATCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52498377|gb|CV245402.1|CV245402 WS0257.B21_F02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_F02 3', mRNA sequence GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): GGGCTTCCTCTACGCTCTCCCCTGCCACTCCCTCACAGCTATGCTCTAGCAAGAGTGGCATGTTCTCTCCTACACATGCGGTGTTTGTGAAACCAACAAGGACAAATATGGTGTTAAAGGAGAGAGGAATGAGAATTTCATGCCAGGCTACAAGTGTTCCTGCTGATGATAGAGTGCCTGACATGGGTAAGAGGGAGCTTATGAATCTGCTTCTTTTGGGTGCTCTTTCACTCCCCACTGCTGGCATGTTGGTTCCTTACACCTATTTCTTTGTCCCTACTGGGCTCGGAGGAGGTGGTGGTGGTACCGTTGCCAAGGATGCCCTTGGAAATGATATGGTTCTGTTACTAGATGGTGGTGGCTATGGGTTTGGTCGCGTCACGCTCTTTGTTATTTGATCACAGACATCAATAATGAATACTAGTGTGGCTTTATGTGATGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|60704955|gb|DN494765.1|DN494765 M125F03.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M125F03 5', mR GGTACCACCACTCCATCATC EST sequence (targeted fragment marked with yellow): GGTACCCGGGAAAGTCGGCACTCTAGCGGCCGGGGATTCATAATACCATCAAAGTATACTCAGTTTCCTGTCCAAGGAATCACTCAATCCATGGCTTCCTCTACGCTCTCCCCTGCCACTCCCTCACAGCTATGCTCTAGCAAGAGTGGCATGTTCTCTCCTACACATGCGGTGTTTGTGAAACCAACAAGGACAAATATGGTGTTAAAGGAGAGAGGAATGAGAATTTCATGCCAGGCTACAAGTGTTCCTGCTGATGATAGAGTGCCTGACATGGGTAAGAGGGAGCTTATGAATCTGCTTCTTTTGGGTGCTCTTTCACTCCCCACTGCTGGCATGTTGGTTCCTTACACCTATGTCTTTGTCCCTACTGGGCTCGGAGGAGGTGGTGGTGGTACCGTTGCCAAGGATGCCCTTGGAAATGATATCGTTGCAGAGCAATGGCTTAACACTCATGGCCCTGGTGACCGAACCCTTTCTCAAGGATTGAAGGGAGATCCAACCTACCTTGTTGTGGAGAAAGATAGAGTTCTTGCAACTTATGGAATTAATGCAGTCTGCACACACCTTGGGTGTGTCGTGCCCTGGAATCAAGCTGAAAGAAGTCATCTGCCCCTGCCATGGAT | |||||||||