| mature miRNA: GGTCATGCTGTAGTTTCATCT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|44666181|gb|CR279615.1|CR279615 CR279615 Oryza sativa library (Han B) Oryza sativa cDNA clone y795f09p3, mRNA sequence GGTCATGCTGTAGTTTCATCT EST sequence (targeted fragment marked with yellow): AGGCGGGCGACATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAAACAATTTTCAGCTGATCCATAGCAATGCCACTGTCAAACAGACATTATTGGCTGATACACTTTCTGAAACCTTCAATTTGATCCTACACTTGTACCATAACCTATATGAAGTATGGACGACACTAGCACAGTATGAACCCAGCATTTCCGAGAAACTACTAGTACAGGCTACCTCATACAGCAGTNGCACAACAAAAAACAAACAACACTAGAGCAACGATGAGCCAACTGCCAAAAGTATACAGGTTTGACTCCCTAAGACGACGAAACTAAAGCATAAGTTTAACCCCTCGAAGAAATGTCCAAAATGCATGGTACTGTATCATCCAATGATCACCGGCTGCCGGGGAGAGATCGGCGTACGGTAGAGGCCAGAGTCAATACCCGAACCACCACCATTGCTCTGTGCTAAGGACCGGCCAAGCAAGATCCTTATCACCTAGCAAAGGTTATTTTCTTTTTTCAACGCGCGGTTCGTTCTTGACTCAGGCTCGTCGCCGCCGGCGTATCCCCGCGGACATAAATCCACTGTAAACACTCAGGCGTCGCACTGCAGCGCCGTCTTGAACTTCTTGATTGTGCAGGAGATGGATTGTCAAGGGCCTACGGAATCAAAGTGACCTTGAGGGGGGCGGTTGTACACAACTTGAACGCAAGGTACAAAACGGCAGTTGTCCGTGGGCGATTAAGCACGGGAGAGTCGACTAGTGAGGCGACAAGTGTGTGGCACTTAAGTGATTGCAGTTCTGATAACGAGCAAAGAGGTTACTAAGCGGTCTATGCGTAGACTTCNTGTCTGCTTGACGGTTGACGTCAGTCTGTCTTTCGTCGTTGCTTACATAAGAACGAGCACTAGTAAGTGAGACAGTAACTAGCGAGAAGAGATGAGAGGCAGCACAGCATGAAGGACGGTAAGGTACGCTAGAGGTAGCGAGCGCAGGTAGCTAGTGGAAGTAGCTACTAATAGCAGCAAGTAGCTAAGACGAGAGAGTGCTAGTAGGATGAAGTAACAGCGTGATCCAGCGTCGTCAGTAGTCAAGCAGGCAAGGCANGGACGAAGTAGAACAGAACGTACAATTGACGGAAGTAGAGCAAGACGAGCTAAGAN | |||||||||
gi|117231473|gb|CT861299.1|CT861299 CT861299 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD GGTCATGCTGTAGTTTCATCT EST sequence (targeted fragment marked with yellow): AATTTTTTAAAAAAAGCAATGATGAAATCTAGCATCTTTCTCGCAAAGCATTTAAAGCAGAGCATTACTCGAGCAAGTCCTTTTGGCAGTCGGCATTTCAGTACAACAACTGCTCATTCAAGCAAAAGTTCTATCATAAAAGGGATGAAGTTACAGCATGAAGCAGCAGAACACGCAGAGAAACTAGAATATTTCGATGCTTTGGTCAAAGCGGTAGAGGCTAAAGAGCTAACCGAACAAAGTTTTGGACCAGAACACACTTATACCGCTGAAGCATTGATCCAAACGGCTAACTACTACGACACGATTGGCCATTTCGAAAAAGCTATGAGCGACGCGAGACAAGCCGTTGAGATCCTCGAACCGCAGTCTACTTCACACAAACCAGCATTTTCTGATGCTCTAGCAATGTATAGCAAAACTCTTGCTTCTGGTGGGTTGTATAGTGAAGCATTGACTGTGGAGAAGGCAGCGCATCAGATCAAGCAGGATTTATTCGGATCGAACAATATTCAGACAGTTAAATCGCTTTGTGCTCTCGGAGACCGCTATAGACTGGTAGGCAATCTGGACAAAGCCACGAACATTCTAACCGACTGCTTTGAGCGTTCTGATCAATTTTTTGATAACAACAATATCGAAAAGTTTACATTAAATCTGTCTCTTGCGGAGTTATACATCGACAGGATTGATTATGATAAAGCCCATTTCCATATCGATAGAGTCATTATGGGACTGAAAATTCTCAATCAGAAGAAGCATCCATTAATTGGAGAACTCCACAATACGCTAGGAGAACTTGAACTACTAGACAAGACTACGAAGGTGCTTTTGATGCATTGCAGAAAGCATAAAATTCCATGAAAAAGTATTCGAAGGCTCCCATCAGACCTTGCAATGACTTAACCTATCTCGCGCGGTTGGACCTCGAAAAAGGAGACCCTGAAAAGCCAAAAAGAAGGCACAAGAGGCAATCGAGATGGTCAAAAACTTTTTGGGGTGGTATTCCTCATCCCTCAAATTCTATTTTTAAACTTGGTGGTTTGCAACCCCATAAGGGGAAAAAACC | |||||||||
gi|44665989|gb|CR279423.1|CR279423 CR279423 Oryza sativa library (Han B) Oryza sativa cDNA clone y780c04p5, mRNA sequence GGTCATGCTGTAGTTTCATCT EST sequence (targeted fragment marked with yellow): ACCGGGGAATTCGGCATTATGGCCGGGGAAAAATCTGAACAGTTGGACTGGGATGCACGTATTAACATAATACTTGGAGCTGCAAAAGGCCTGGCTTATTTGCATCATGATTGTTCACCTCGAATAATACATCGTGATATTAAATCGAGCAACATCTTACTAGACGGCAATTTTGAGACTCGTGTATCAGACTTTGGACTCGCAAAGCTATTAGAGGACGACAAATCCCATATTACTACAATAGTTGCAGGAACATTTGGCTATCTTGCACCAGAGTATATGCAAAGTGGCAGAGCCACCGAAAAGACTGACGTCTACAGTTTTGGAGTTTTGCTACTTGAAATACTAAGCGGAAAACGACCTACTGATGCATCATTTATTGAAAAGGGATTGAACATTGTTGGATGGTTGAATTTCCTGGTCGGTGAGAATCGGGAGAGGGAAATTGTCGATCCATATTGTGAGGGAGTGCAGATTGAGACCTTGGATGCTCTACTTTCTCTTGCTAAACAATGTGTAAGTTCTTTGCCAGAGGAGCGGACTACAATGCACAGGCTGGTACAGATGTTGGAGTCGGATGTAATTACACCATGACCCAGTGATTTCTATGGATCAGAATAGGGTTCAAATTAAGGGTGGATTTAAAAAGGCAAATTGCGAAGGTTTACTGTGGAAGGACTTCCTTTATCTTGGAAATTATGTAATCATTCTGAGAGACGTACAGCTAGAACGAGGGAGACGGCATGAACGCAACACACCATCAGTAGCACGACGGGCAAGGCACAACGCAAAACGAATAAGAAGGGCGCGACACAATTCGAGGAGTCAGACAAGCCACGAGCAAGGAAAGACACACGCCTCACGCCACCACAACCACCGACGAGAAACGACGCCGAGAGAGAGAAGGAGGCGTAGTGGGACAGCAC | |||||||||
gi|163921591|gb|EG714142.1|EG714142 Os6CPREST1975 6cm rice panicles Oryza sativa Japonica Group cDNA clone 6CPR-L1C02SA, mRNA se GGTCATGCTGTAGTTTCATCT EST sequence (targeted fragment marked with yellow): CGGCCGGGCGGCAAATTGTAGGCTTGGGCGACACTGGCAATCTTGTTAATTGCAACTGCTGAACGATTAGCTGCCTCCAGGAACAGATTAGCATTGCAAGTTGGATACAACTACAGTGTGACCATGAACTAATTTGCTGCAGGATGAAAAGGTGCACCTGGTGTCACAGCTTAACTCATAGCTGCTCAGCATTTGGTGGTTGACATCTGCACTCTTGCTTGTGGTGGACTCAAACCAAAGCTTGCAGTAGTGCAGCTAACTAATGGTCCTCCTTGTACTGTTAGCTGGCTGCGATGTCCGGTTTCTTTTTTGTTTGTTTGTTTTTTATTTTCTTTTCTTTTTTTTTTTTAGAAAGAGAGGCAAAGCCTCTCCTGTTTGTATTAATAGTAATGGCAACCATTATTTGACTGC | |||||||||
gi|86598533|gb|CI355150.1|CI355150 CI355150 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone GGTCATGCTGTAGTTTCATCT EST sequence (targeted fragment marked with yellow): CCTCCTGTGATTTACATATACACTCAAAAACGAGAAACATGGTGTACTCGCCGAGACGCTAGAATTTGCTCGGCGAGTCAAAATACAACAATATGCTACTACGAGGTCCCAAGCTGTTGCCAACAATATCCAACACAATTACAAGTTTACAAGGTGGATTAACAGCATGACCAAAGGGTAAACAATAATCACTAAGCTAAGCCTACAGCAACACAATCACCAAGAAGAAAAGAAAATTAACGTGGTTACTATCTATCATTCTGTCTCCAAGATCCTAACTCCCATACCACCAATGATGCTTTCACCGTGTTAAGTTGAGCTTCAGCATTTCACCTATCAACAATCAGTTACCTGTCAACCCAAACTCTGAAGCGTGATCATGGAACGACAACAAGCAGAAGGATTTGCAGCGCAAACGGTGATTTCACAGTA | |||||||||