| mature miRNA: GGTGAAGATGTCAGCTAATT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73878287|gb|DT481025.1|DT481025 WS02530.BR_K17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_K17 5', mRNA sequence GGTGAAGATGTCAGCTAATT EST sequence (targeted fragment marked with yellow): AATCTCTTTCTGAACCGCAAACCCTAACTCTCTCTGCAAAAGATGTCTCACTTCGGCAGGTCTGGCCCTCCAGACATCGCCGACACATACTCTCTTCTCGTCCTCAACATCACCTTCCGTACTACTGCTGATGATCTGTTTCCTCTATTCGACAAGTACGGCAAGGTTGTTGACATCTTCATCCCTAGAGATCGAAGAACTGGGGAATCGAGGGGCTTTGCATTTGTGCGCTACAAATACGCTGATGAAGCTCAGAAGGCAGTGGAAAGGCTAGATGGGAGGGTTGTTGATGGTCGCGAAATAACAGTTCAGTTTGCAAAATATGGGCCCAAGGCTGAGAGGATTCATAAGGGAAGGATTGTTGAAACGCCTTCAAAATCAAGGCACAGGTCCAGAAGTCGCAGCCCTCGGAGAAGGTACCGAGATGACTCTAGAGATAGGGAATCTAGGAAGAGAAGTAGGAGCAGAAGCAGGGACAGGGACAGGTCTGACCGTGACAGGTACCGTGCAAAGGACAAAGATTATCGTAGACGGAGCAGGAGTCGCAGTGCCAGTCCTGATTACTCCAGAGGACGTGGTAGAAGCCGTTATGATGATGAGCGGCGAAGTAGCAGCCGATCTAGGGACAGTCTCTCCCCTCGGCGGAGCCTAGAACCTCGAAGGAGTTTTTCCCCACGTAAGAATTCCCCTGTGAAAGGTGAAAGCCCTGATAGACGCAGCCGTGATGGTGGGTCTCCAACCCCTCGAAGTGCTTCTCCACGAGGTCGGCCTGCTGCGTCTCGTAGCCCATCCCCGCGAAATTCAGATGTTGATGAATGAGCTTTGAGGGGTGCATGGATCTTTTGTGGCACTTTGACTAGTGCCAATCTGATGGGTCATGTGCTACAGCTGAACTCT | |||||||||
gi|18004648|gb|BI120673.1|BI120673 F019P91Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence GGTGAAGATGTCAGCTAATT EST sequence (targeted fragment marked with yellow): CAAAAGTACAAGGACTAAATAAGGCCGATGAATCTACTATNTGAATAACCCCAGCAAGATTATTTTCAAGAAAGTTCTCTCAATCTCTTTCTGAACCGCAAACCCTAACTCTCTCTGCAAAAGATGTCTCACTTCGGCAGGTCTGGCCCTCCAGACATNGCCGACACATACTCTCTTCTCGTCCTCAACATCACCTTCCGNACTACTGCTGATGATCTGTTTCCGCTATTCGACAAGTACGGCAAGGTTGTTGACATCTTCATCCCTAGAGATCGAAGAACTGGGGAATCCGAGGGGCTTTTGCATTTGT | |||||||||
gi|73875463|gb|DT478201.1|DT478201 WS02522.BR_C02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_C02 5', mRNA sequence GGTGAAGATGTCAGCTAATT EST sequence (targeted fragment marked with yellow): GCGCAAACCCTAACTCTCTCTGCAAAAGATGTCTCACTTCGGCAGGTCTGGCCCTCCAGACATCGCCGACACATACTCTCTTCTCGTCCTCAACATCACCTTCCGTACTACTGCTGATGATCTGTTTCCGCTATTCGACAAGTACGGCAAGGTTGTTGACATCTTCATCCCTAGAGATCGAAGAACTGGGGAATCGAGGGGCTTTGCATTTGTGCGCTACAAATACGCTGATGAAGCTCAGAAGGCAGTGGAAAGGCTAGATGGGAGGGTTGTTGATGGTCGCGAAATAACAGTTCAGTTTGCAAAATATGGGCCCAAGGCTGAGAGGATTCATAAGGGAAGGATTGTTGAAACGCCTTCAAAATCAAGGCACAGGTCCAGAAGTCGCAGCCCTCGGAGAAGGTACCGAGATGACTCTAGAGATAGGGACTCTAGGAAGAGAAGTAGGAGCAGAAGCAGGGACAGGGACAGGTCTGACCGTGACAGGTACCGTGCAAAGGACAAAGATTATCGTAGACGGAGCAGGAGTCGCAGTGCCAGTCCTGATTACTCCAGAGGACGTGGTAGAAGCCGTTATGATGATGAGCGGCGAAGTAGCAGCCGATCTAGGGATAGTCTCTCCCCTCGGCGGAGCCTGGAACCTCGAAGGAGTTTTTCCCCACGTAAGAATTCCCCTGTGAAAGGTGAAAGCCCTGATAGACGCAGCCGTGATGGTGGGTCTCCAACCCCTCGAAGTGCTTCTCCACGAGGTCGGCCTGCTGCGTCTCGTAGCCCATCCCCGCGAAATTCAGATGTTGAT | |||||||||
gi|73868954|gb|DT471692.1|DT471692 WS01214.BR_L24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01214_L24 5', mRNA sequence GGTGAAGATGTCAGCTAATT EST sequence (targeted fragment marked with yellow): GATTGCATTGCATCCTTATCAGTTATCTAGCCAACGAGGTTTCTTAGCTCTACTGATAATATGGATTGCCTTCAAGAAAACTTCTTTGAAACACCAGTTCATTTATTTTCTGGTTTTGCTCCCCGTAGCCGAAAAGTCGTTGAAACACCAATTCAATGCTCTACTACTGCCTTTTATAAGTTCTTCAAGAAACAAGCAAACTTCTTACCGAATGTCTGCGGTTCTGTTGTGCAGACAATAGGACTTGTTGACAGTAACAAAAGCTGGGTTAATACTGTTGGCTCTCGCAAGGTGATTGAAATCCTGTCTGCCGAGTCTTGCCGTGATACTGCGGAGAAATTCAAGTATATAGTTGAAGCCATTGACGACCGCTCCAGGAAAATCACCTACAAATTGCTGGAAGGATCGTTGCTGCAATTATATGACAACTTCACCGTCACTCTACAGGTTACTTCTGCCAGCACCGCAAAATGGACCATCGAATATCAAAAAAAAAAAAAAAA | |||||||||