| mature miRNA: GGTGCACTGCCAAGTCCAAG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52392393|gb|CV234633.1|CV234633 WS01215.B21.1_K10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01215_K10 3', mRNA sequence GGTGCACTGCCAAGTCCAAG EST sequence (targeted fragment marked with yellow): AGATCATTTGGTAGATCCTCTGATGAAACGAGAGATGATCCATTTGATCATGTTGGTTCAATTCTTGTGAACATTTCAAAGAAAGAAGCTGGAAGGAAGATGTTACTAGACTCTAAGAGAGGGTTGCTGAAGCAGATTCTCCGCCAATTTGATTCAACAAGTCCATTACGGAAGAAAGGGGTCTCTGGAACACTCCGCAACTGTTGTTTTGAAGCTGAGAATCAACTTCAGAATTTTCTTTTGATATCTGAGTTTCTTTGGCCAGCTCTACTTCTTCCTGTTGCTGGTAAAAAGATATATAGTGAACAAGACACATCAAAAATGCCTCTTGAGCTTGGCAGTGCACTCTCAATTGAGCGTGAACCATGGGATGATCCTGAAATTCGTGTTGAAGCATTGGAATCTATTTACTTGATCATAGTACAGGAGGCAGGTCTAAGAGCCTTATGGTCTGTGAATGGACCACGTATATTACAAGTTGGATACGAAGATGAGGAAGATCCTAAAGTAATGGAAGCATATGAACGAGTTGGCTCGTTGCTGGTTCATGGCTGTGGGACAGAGGAACCCTCCACTGAGACATCAAAATGATAGTCGGTTTGTGTAAGATCTGAATCAAATTGGTATCAGGCTGATTTTTGCTGTCATCTGCCAGCGGACTGGAAAATGTTACCTATAGTGTTCATTGAACTCGAGCTATTTTTGGTGATGTAGGTGTCCAGGATAATATGCTTGTAGTCTGTTAGAGAACAGTTCCTATAAGGTTATATAAAAAAAAAAAAAAAAA | |||||||||
gi|52374796|gb|CV225934.1|CV225934 WS0162.B21_M23 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_M23 3', mRNA sequence GGTGCACTGCCAAGTCCAAG EST sequence (targeted fragment marked with yellow): GATGAAGTGGAGGATCTTGAGAAGAATGGCATCACTGTTATCCAAATCGATGAGGCTGCTTTGAGAGAGGGTTTGCCTCTTAGAAAATCCGAACAAGCTTTTTACTTGGATTGGGCAGTCCACTCATTCAGGATCACCAATTGTGGCGTACAGGACACCACCCAGATCCACACTCACATGTGCTACTCCAACTTCAATGACATTATCCACTCAATCATCGACATGGATGCTGATGTGATCACCATCGAGAACTCTCGCTCCGATGAAAAGCTTCTCTCAGTCTTCCGTGAGGGAGTGAAGTATGGTGCTGGAATTGGTCCTGGTGTCTATGATATCCACTCTCCCAGAATACCATCAACCGAGGAGATTGCTGATAGAATCAACAAGATGCTTGCAGTGCTTGAGACAAACATATTGTGGGTTAACCCTGACTGTGGACTCAAAACTCGCAAGTACTCTGAGGTGAAGCCAGCTCTCAAGAACATGGTTGATGCTGCCAAGCTCCTCCGCACCCAACTTGCCAGTGCCAAGTGAACCGATCAGGAGATGTTGGAGTACAATCAACCCTTATCTATTGGTTGCAATCTATGATTTCTTCTCCTTTTTTTTTTTTCTCTTTCCGTATTGGATTTCGGTTCTCCAAATTCAATTCTTTAAAAGGCTTCAAATTACTTATGTACTTTATGATGAAAGTTAATGGAATGTCATTACCAATTTGTGCAATGAGGTGATCTTTCAAAATATAAAGTATTAGATTGATGCTTTTGCTTTTACCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52501196|gb|CV248221.1|CV248221 WS0112.B21_O04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_O04 3', mRNA sequence GGTGCACTGCCAAGTCCAAG EST sequence (targeted fragment marked with yellow): TGTTATCCAAATCGATGAGGCTGCTTTGAGAGAGGGTTTGCCTCTTAGAAAATCCGAACAAGCTTTTTACTTGGATTGGGCAGTCCACTCCTTCAGGATCACCAATTGTGGCGTACAGGACACCACCCAGANTCCACACTCACATGTGCTACTCCAACTTCAATGACATTATCCACTCAATCATCGACATGGATGCTGATGTGATCACCATCGAGAACTCTCGCTCCGATGAAAAGCTTCTCTCAGTCTTCCGTGAGGGAGTGAAGTATGGTGCTGGAATTGGTCCTGGTGTCTATGATATCCACTCTCCCAGAATACCATCAACCGAGGAGATTGCTGATAGAATCAACAAGATGCTTGCAGTGCTTGAGACAAACATATTGTGGGTTAACCCTGACTGTGGACTCAAAACTCGCAAGTACTCTGAGGTGAAGCCAGCTCTCAAGAACATGGTTGATGCTGCCAAGCTCCTCCGCACCCAACTTGCCAGTGCCAAGTGAACCGATCAGGAGATGTTGGAGTACAATCAACCCTTATCTATTGGTTGCAATCTATGATTTCTTCTCCTTTTTTTTTTTTTCTCTTTCCGTATTGGATTTCGGTTCTCCAAATTCAATTCTTTAAAAGGCTTCAAATTACTTATGTACTTTATGATGAAAGTTAATGGAATGTCATTACCAATTTGTACAAAAAAAAAAAAAAAA | |||||||||
gi|73889775|gb|DT492513.1|DT492513 WS02550.C21_P05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_P05 3', mRNA sequence GGTGCACTGCCAAGTCCAAG EST sequence (targeted fragment marked with yellow): AAATGATCAACCCAGATATGAGACTTGCTACCAGATTGCTTTGGCCATTAAGGATGAAGTGGAGGATCTTGAGAAGAATGGTATCACTGTTATCCAAATTGACGAGGCTGCTTTGAGAGAGGGCTTGCCTCTTAGGAAGTCTGAGCAAGCTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGGATCACCAACTGTGGCGTACAGGACACCACTCAGATCCACACTCACATGTGCTACTCCAACTTCAATGACATTATCCAATCAATTATCGACATGGATGCTGATGTGATCACCATAGAGAACTCTCGCTCCGATGAAAAGCTTCTCTCAGTCTTCCGTGAGGGAGTGAAATATGGTGCTGGAATTGGCCCTGGTGTCTATGATATCCACTCTCCTAGAATACCATCAACCGAGGAGATTGCTGACAGAATTAACAAGATGCTTGCAGTGCTTGAGACAAACATCTTATGGGTTAACCCTGATTGTGGACTCAAGACTCGCAAGTACACCGAGGTGAAGCCAGCTCTCAAGAACATGGTCGATGCTGCCAAGCTCCTCCGCACCCAGCTTGCCAGTGCCAAGTGAGCCACCCAGGACATGTTGAGAGTTCAATCTTCCATGTTCTAATGAATTTTATTCAAAATTCAAAACATAGAAGGTTGAGAGTGGAATCTTCCCTTGTCCATTGAATTTTATTCAAACAAAAAAGGAATTTATTGTTTGAATAACTGTGGGTTATGAGGAAATTATTTCAGTAATAAAGATTCAAAGCCATTTTAAAGTTCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886876|gb|DT489614.1|DT489614 WS02542.B21_L10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_L10 3', mRNA sequence GGTGCACTGCCAAGTCCAAG EST sequence (targeted fragment marked with yellow): AAGCAGTTTGGAATTGGTGGTGCACTTCCACCAAAGAAAGGATTTGACTAGATTTGTCAAGTGGCCACATGTTGTTCGTATTCAGAGGCAAAGAAGGATTCTGAAACAGCGTTTGAAGGTCCCTCCTGCTGTTAACCAGTTCACAAAAACACTTGACAAGAACCTCGCTACGCAACTTTTCAAGTTGTTCCTAAAATATAGACCTGAGGACAAGGCTGCTAAGAAGGAAAGGCTTCTTAAGAGAGCACAAGCTGAAGCTGAGGGGAAGACTGTGGAAACAAAGAAGCCTATTGTTATTAAATATGGTCTTAACCATGTTACTTACCTCATTGAGCAGAACAAGGCCCAGCTGGTTGTTATTGCACATGATGTAGATCCAATTGAGCTTGTTGTTTGGTTGCCTGCATTGTGCCGGAAAATGGAGGTTCCTTATGCCATTGTGAAGGGCAAGTCACGACTTGGAGCGATTGTCCACAAGAAAACAGCTTCAGTTTTGTGCCTTACTTCTGTCAAGAATGAGGACAAATTGGAATTTAGCAAGGTTTTGGAGGCAGTCAAGGCTAACTTCAACGACAAGTTTGATGAGCACCGCAAGAAATGGGGTGGTGGCATCATGGGTTCCAAATCTCTGGCCAAGAGCAAAGCTAAGGAGAGAGTTTTAGCCAAGGAGGCTGCGCAAAGGATGTCTTGAGCTCATCTACTTTAGAGGCTTTGGACACGAGTTACAGTGAGAGGATCTTTCCTAGATGATTGTAGCTTTTATTTCTCTTTGTTTACCGCTCTGTTTGTTAGTACTGTGGACAAGTTTTGTATTGATTGGGTGGCGGGAACATCATCTTCACATCCTCTGTTATCCATCCTTTTGGTGGGAGAACGAAAATCTAAAGCCATCTCTTCTCTTAAACTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52373789|gb|CV225442.1|CV225442 WS0161.B21_G14 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_G14 3', mRNA sequence GGTGCACTGCCAAGTCCAAG EST sequence (targeted fragment marked with yellow): CCAGAGTGGAAGCTTGAATGGGGGTGGAAAACTCAATTCAAGCATACCTTTGAGTGAACAAGTAGATCTAATTGTATGGATGCGCACTGCAGCACTGCCAACGTTCAGAAAACCATATGGAAAGATAGAAAGGGACCTTCCTGCTAACACTACAATTACGGTTATCATTCAGAATAATTATAATACTTACAGTTTTGGAGGCAAAAAGAAGCTGGTTCTTTCAACCACGAGTTGTTTAGGTGGAAAAGATAATTTCTTGGGCAGTGCGTATCTCTTTGTTGGTGGCTTGTGCTTGTTCTTGGCAGTGTGCTTCATACTTGTTTATGTGTTAAGGCCAAGGCCCATTGGCGATCCATCCTACTTATCTTGGAACAGGAATCCAGGAGGATATGTGAATTAGAACTCTAAACCATGTTCTGTCAATTTGCAAGTTTGTGATCCACCTTCTAGCCATGCTCCTGCACAAGCTTCATTTCTATCACACCAAACCAACAGTTCCATATAGGAATCTAGGGCTTTGCATTCTGATAAATGCAAAGACATATTGTCATTAACTTAATATATGATAGGATGATAAAAGTCGTTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24071523|gb|BU879999.1|BU879999 UM40TB08 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GGTGCACTGCCAAGTCCAAG EST sequence (targeted fragment marked with yellow): GGAGGATCTTGAGAAGAATGGCATCACTGTTATCCAAATCGATGAGGCTGCTTTGAAAGAGGGTTTGCCTCTTAAAAAATCCGAACAAGCTTTTTACTTGGATTGGGCAGTCCACTCCTTCAGGATCACCAATTGTGGCGTACAGGACACCACCCAGATCCACACTCACATGTGCTACTCCAACTTCAATGACATTATCCACTCAATCGTCGACATGGATGCTGATGTGATCACCATCGAGAACTCTCGCTCCGATGAAAAGCTTCTCTCAGTCTTCCGTGAGGGAGTGAAGTATGGTGCTGGAATTGGTCCTGGTGTCTATGATATCCACTCTCCCAGAATACCATCAACCGAGGAGATTGCTGATAGAATCAACAAGATGCTTGCAGTGCTTGAGACAAACATATTGTGGGTTAACCCTGACTGTGGACTCAAAACTCGCAAGTACTCTGAGGTGAAGCCAGCTCTCAAGAACATGGTTGATGCTGCCAAGCTCCTCCGCACCCAACTTGCCAGTGCCAAGTGAACCGATCAGGAGATGTTGGAGTACAATCAACCCTTAT | |||||||||
gi|24064150|gb|BU872626.1|BU872626 Q045B01 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GGTGCACTGCCAAGTCCAAG EST sequence (targeted fragment marked with yellow): GGACCCATTTTCACCTCAAACACGTTCAGGTTTTCGATCTGCAAGTCTCCTCTTCGAGATGGCTCCCAAAAGAGGCGTGAAGGGCCCACTGGCAGCAAAGAAGAAACCTGAAAAGGTAGTGAACCCTTTGTTTGAAAAACGTCCAAAGCAGTTTGGAATTGGTGGTGCACTTCCACCAAGGAAGGATTTGACTAGATTTGTCAAGTGGCCACATGTTGTTCGTATTCAGAGGCAAAGAAGGATTCTGAAACAGCGTTTGAAGGTCCCTCCTGCTGTTAACCAGTTCACAAAAACACTTGACAAGAACCTTGCTACACAACTTTCAAGTTGTTCCTAAAATATAGACCTGAGGACAAGGCTGCTAAGAAGGAAAGGCTTCTTAAGAGAGCACAAGCTGAATCTGAGGGGAAGACTGTGGAAACAAAGAAGCCTATTGTTATTAAATATGGTCTTAACCATGTTACTTACCTCATTGAGCAGAACAAGGCCCAGCTGGTGGTTATTGCACATGATGTAGATCCAATTGAGCTTGTTGTTTGGTTGCCTGCATTGTGCCGGAAAATGGAGGTTCCTTATGCCATTGTGAAGGGCAAGTCACGACTTGGAGCGATTGTCCACAAGAAAACAGCTTCAGTTTTGTGCCTGACTTCTGTCAAGAA | |||||||||
gi|73896882|gb|DT499620.1|DT499620 WS0118.BR_N05 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_N05 5', mRNA sequence GGTGCACTGCCAAGTCCAAG EST sequence (targeted fragment marked with yellow): TACCCATTTTCATCTCAAACACGTTCAGGTTTTCGATCTGCAAGTCTCCTCTTCTAGATGGCTCCCAAAAGAGGTGTGAAGGGCCCACTGGCAGCAAAGAAGAAACCTGAAAAGGTAGTGAACCCTTTGTTTGAAAAACGTCCAAAGCAGTTTGGAATTGGTGGTGCACTTCCACCAAAGAAGGATTTGACTAGATTTGTCAAGTGGCCACATGTTGTTCGTATTCAGAGGCAAAGAAGGATTCTGAAACAGCGTTTGAAGGTCCCTCCTGCTGTTAACCAGTTCACAAAAACACTTGACAAGAACCTCGCTACGCAACTTTTCAAGTTGTTCCTAAAATATAGACCTGAGGACAAGGCTGCTAAGAAGGAAAGGCTTCTTAAGAGAGCACAAGCTGAAGCTGAGGGGAAGACTGTGGAAACAAAGAAGCCTATTGTTATTAAATATGGTCTTAACCATGTTACTTACCTCATTGAGCAGAACAAGGCCCAGCTGGTCGTTATTGCACATGATGTAGATCCAATTGAGCTTGTTGTTTGGTTGCCTGCATTGTGCCGGAAAATGGAGGTTCCTTATGCCATTGTGAAGGGCAAGTCACGACTTGGAGCGATTGTCCACAAGAAAACAGCTTCAGTTTTGTGCCTTACTTCTGTCA | |||||||||
gi|24066965|gb|BU875441.1|BU875441 V007B08 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GGTGCACTGCCAAGTCCAAG EST sequence (targeted fragment marked with yellow): TTTTCACCTCAAACACGTTCAGGTTTTCGATCTGCAAGTCTCCTCTTCTAGATGGCTCCCAAAAGAGGTGTGAAGGGCCCACTGGCAGCAAAGAAGAAACCTGAAAAGGTAGTGAACCCTTTGTTTGAAAAACGTCCAAAGCAGTTTGGAATTGGTGGTGCACTTCCACCAAAGAATGATTTGACTAGATTTGTCAAGTGGCCGCATGTTGTTCGTATTCAAAGGCAAAGAAGGATTCTGAAACAGCGTTTGAA | |||||||||