| mature miRNA: GGTGGAGGTGGTGCTGTGCCA species: Lactuca serriola database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22409852|gb|BQ990317.1|BQ990317 QGF1c01.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGF1c01, mRNA sequence GGTGGAGGTGGTGCTGTGCCA EST sequence (targeted fragment marked with yellow): GATATGGCAGTGGAGGTGGAGCTGGAGCAGGAGGAGGTGCCGGAGGACCACCTCCACCCAAGCTAGCTTGGCAGCTCCATTCACCGGCCTCAAGTCTAACGTAGCTTTCCCAGTTACCAAGAAGGCTAACAATGACTTTTCATCCCTACCCAGCAACGGTGGAAGAGTACAATGCATGAAGGTGTGGCCACCAATTGGGTTGAAGAAGTACGAGACTCTTTCATACCTACCACCATTGTCCGACGAGGCATTGTCTAAGGAAATCGACTACCTTATCCGCAACAAGTGGATTCCATGCTTGGAATTCGAGTTGGAGCATGGTTTCGTTTACCGTGAGCACCACCATTCCCCCGGATACTATGATGGAAGATACTGGACAATGTGGAAGTTGCCTATGTTCGGGTGCACTGACTCAGCTCAGGTCATGAAGGAGGTTGGAGAGTGCAAGAAGGAGTACCCCAACGCCTTCATCCGTGTTATTGGATTCGACAACATTCGTCAAGTGCAATGTATCAGTTTCATCGTTGCCAAGCCCCCAGGCGTTCTCTAAGCACCAAAACTTTGGATTGACTCGAATCGGCTTCATTTGAATGTTCAGGTTTTTGTAATTCTTTTCCTTGAAATTTTCCTTTTTCTCTTGCTTTCGTTGGTTGCTTCCGGATTTCCGATGAAATGGATAAGAGATGTCATATATAAA | |||||||||
gi|22410990|gb|BQ991455.1|BQ991455 QGF22O18.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGF22O18, mRNA sequence GGTGGAGGTGGTGCTGTGCCA EST sequence (targeted fragment marked with yellow): GACGATCAAACTCGAGCAATTCCTGCCTGTATTTGGTACGAAACCGAAGGCCTGGTTCGCACAACACAGTTTTGGCTATGGCGCTGCAAATGAAAGCAAACTGTTGCGCTGCCGCAGCACCACTTCCATTCCGGCGGTGTCTAAGTCCATTCAGCAGCCGCGTGTCCTTCCAACCATCACAAAAAGTTTCTCGGTTCACTGTGTCGTGTGTTGTTAAGAAAAGCCCTAAACGCCTCAAGTACGCTACCCCTCGTTTTCCCAAGGAGGATGGATTGCTCTACATTGAAGTTGATCCTAATGGAGCAGACACATGGAAAGTGGATTCAGCTGTGGAACTTCTTAAAAAGGGAGCTGTTGGTGTGATTCCCACAGATACTGTGTATGCTATGGTTTGTGATATGACTAATCATGATGCCATTGAACGTCTTCGAAGGTTGAAAGAGGTTGAAGCTTCAAAGCCATTTAGTATTTTGTGTCGTTCCCTCCATGACATTGATACATATACGACTGGATTCCCTCGTGGGAACAGTGATGGTATTTCAGACATTTTCAGAGCTGTGAAACATTGCTTACCTGGACCTTACACGTTCATCTTAACTGCAAGCAAAGCATTACCAAAACAGTGTATAAAATACGGAACCACAACTTCTAAATACGCATATAGGAAAAAATTTGGGTGTCCGCATACCTAATGATGCTGTATGTCAAGCTGTATTGGAGAAGATGGGTGCACCTCTTATTTC | |||||||||
gi|22442220|gb|BU007825.1|BU007825 QGH5J11.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGH5J11, mRNA sequence GGTGGAGGTGGTGCTGTGCCA EST sequence (targeted fragment marked with yellow): GGAAGAAGACAACTGATGCTATGTTCCCAATTCCTTAGGCGATTCTCCCTTCATTGCCGCCGTTCGCCGTTGTGTACCAACGTTCCTCGTCACTTGTACGGCACGTCACCATCTCCATCAGCACTGATGGGAAAGGCTGCAAACTCCGCTCCAAAGTCTTCGGTATCAATTACCAAGGACGATGCTTATCTTCAATCAGTTATCCCCAAACGAATCGAACTTTTTGAGTCCATCAAAGCTGAACAGATTGCGCATCGCCAGTCTATTTCCGGCGACCCAATCAAGGTTACTTTACCGGATGGGACTGTGAAGGAGGGGAAGAAATGGGCAACAACTCCTTTCGATATAGCGAAGGAGGTATCCAAGAGCTTAGCGTCAAATGCTTTGATTTCTCAGGTGGATGGAGTACTTTGGGATATGTCAAGGCCCTTGGAAGGTGATTGTCAGCTTAAAATATTCACTTTTGATAGTGATGAGGGTCGTGACACATTTTGGCATTCAAGTGCTCATATTCTTGGCCAGGCCCTTGAAATGACATATGGATGCAAATTGTGCATTGGGCCATGTACTACAAGAGGAGAGGGTTTCTACTATGATGGTTTCTACGGTGAACTGGGATTANATGATGATCACTTTGACCAAATTGTTTCTGGAGCAAAGAAAGCTGTTGCTGAAAAACAACCTTTTGAGCGAATTGAAGTGTCACGAAAGCAGGCTCTTGA | |||||||||
gi|22440263|gb|BU005868.1|BU005868 QGG9E24.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGG9E24, mRNA sequence GGTGGAGGTGGTGCTGTGCCA EST sequence (targeted fragment marked with yellow): AGAGGGCGGGGTAGAGGAAGGGGCAGGGGCCGGGGGAGAAGCTCAGCAGATAGAGAGGCTCCCCAAACAGATATTGAACTCGAATCCTGCACGCCATTGATTCCACCAACCTCCACCACCACCGCCGCCGCCGCTACTGCCGCTGCTGCCACCACCGCGATCAGTGATGGTGGTCGGGACTTTGATTTGAATGCCGGGGTTGATGAGAGTATGGAGAAAGCATCCGATGGGTTAGCCGGAGGAGCACCACCACCTCCACCGCTACCGGAGTCCATTCCTGGTGGTGGTGGAGATGGTGGTTCAGAGGCGGCTGAAGTAAAAAACGAAGAATATCTTGGGGGGTCGCTTTCGGAAATGGACAGGATGGTGATTGACACTGGAAATTTGGGACAAATTAACTCAAGGTTGGATGAGGAAGATGAAGACTATGATGAAGAATAACTGGTAGAATACCAAATCTTACATATGTTTTTTTTATATAAATGTTTACCCTTAATTCTCTCTTTTTTTTTTTAATCTTTGGTGGTGTATTGGAAGGGCATTTATGTGGTGTTGTATTTTGAATCTGAAGGCCCTTACAGTACCCATGTANGTAGTAGGTAGTATTATGAATGATTGATTGCTTGAAGCATTCAGATATCTTGGAAACAAACTGAAATGGGAAATCTGTCAACAACTTTCT | |||||||||