| mature miRNA: GGTTTTGAACCAGAAACCGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|38574922|gb|CK090597.1|CK090597 F014P94.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F014P94 3', mRNA seque GGTTTTGAACCAGAAACCGG EST sequence (targeted fragment marked with yellow): CCCTTCCAAAGGCTTGTGAAAAAAATTGCTCAGGATTTCAAGCCCGATTTCAGGTTCCAAACCAGTGCTGTCCCAGCTTTTCAAAAACCACCCGAGGCTTATTTCGTGGGTCTTTTTGAGGACCCAAATTTGTGTGCTATTCATCCCAAAAGGGTTCCAATCATGCCCAAGGATACCCAGTTGGCTAAAAGGATCAGGGGCGAAAGGGCTTAAGTTGCGGGGCTTGTTAAAATTGTCTGGGTCTCATGTTTTTAGGGTTTATCGTTTTTTTTGTTGCTAATTTTTAGGGAAGCAAAGATCTGGCTAGATCTACTATTAGAATCATTCCCTTATCTAGTGATCTTGATTTCAGTACTGAAAAAGGTAATCGTTTTAAATGCAAATGGAAAACGGACTTAAATGTTTTCCCT | |||||||||
gi|24070245|gb|BU878721.1|BU878721 V050F07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GGTTTTGAACCAGAAACCGG EST sequence (targeted fragment marked with yellow): CCTCATAAGAGTTCTCTGCATACAGACTTTCAATATGAAACAATTGAAAGGAAATACGAAGCTGTGGATTGTGGTGGCAGCATATCTTTTGTCGACTGTACTCGTGGCGAGTACAGAAGCTGGGAACATGGACTCATTGGCAGAAGATCAAACTGGGAGGGACATGATCATCCGCTCTGTCGTGCCAAAAAATGACGATGTTGTTTCTGGTTCAAAGTCCACACAACACATTGTTGGCATAAATAATTTGTGCGTTGACGTGTTTCTTGAACTCTACTTTGATGAAAACATAGTACAGTTGTACCCGTGTAAATCTGACGGAGATGTGAATCAACAATGGAGCTTGGAGAAGAACGGAACCATTCAATCTAAAGGCAAGTGTTTGACCACAAACGGCACAAGTCCAGGAAGCTATGTATTTATCTCTGACTGCAACAAGGTGAAGGCTAGCGCCACAATCTGGAAAGTACAAAAGGATGGCTCCATCCTAAACCCCTCCTCGTCACTAGTTTTGACCTCAAAGTCCGGGAAAAGTGGCTCCCTACTCACCTTGGAAACCAATGTTTA | |||||||||
gi|52497876|gb|CV244901.1|CV244901 WS0255.B21_O23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_O23 3', mRNA sequence GGTTTTGAACCAGAAACCGG EST sequence (targeted fragment marked with yellow): GCGAAAGTAGTAGCAGAGAAGAACAAATGTTCTTCACCATCTCAATCCTTCTCCCGTCACTTTTATCCAAGCAAAACCATGGAAACTTAAATACTTTGGCTGGAAGAGTGAAACCATGATCTAAACATCAAGCTAGAATAAATAGTGGAGAGAGAGGGTGTAAAGGTAGAGAGAAAGTGAAGAAATGGAAGGAAAATGGAGATTTGAGGTGGAGATCCGGTTTTGGGTTCGAAATTTGGCATCAAAATGACAAGGAAGGTGTGCTTAATCCACCTAGCTTACTTTGATTCCAATTACGAGAAACATTCAGAAAGAAACCCGACTTTTCAGAAGCTGGGATGACGAGAGTTAAGGTAAGGAATTGACCCACCCTTTCCTTTTTAATTATTTATACATGATTTTATAATGTTAGAATTATAATGGTAATTAAATTATATAGTGTATTGTTGTTGTTATTGTTAATGGAAGGCATATGCCTTCGAAGTAGAAATTGGTATGTAATTTGTAGTTAATCGCATAAGAGATAATGGGTAGTCTATTATGAGATGTGATTTACTGTAACGTAAAAAAAAAAAAAAAAAA | |||||||||
gi|3857628|gb|AI166343.1|AI166343 xylem.est.185 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence GGTTTTGAACCAGAAACCGG EST sequence (targeted fragment marked with yellow): AAATACTCTTATAGTAGTATATACATACATAGTATCTGGTATTCTCGGACCTTCGGTTCCTAGGCTTAACAAATGGCCAATTTGAAGTGCTTGGCAGTTCTTGGTCTCCTCGTTGCATCTTTTGCTGTGAGTGAAAGCCGGGTCGCTAAACAAGACTTGGGCTTGGACCTTGGAGGCTTAGGGATTGGTTTGGGTGTTGGATTGGGTATTGGGCTGGGAGGTGGTGGATCAGGTTCTGGTGCTGGAACAGGTTCGGGTTCGGGTTCCAAACCTGGGTCTANCTCAATTTCCATTTCATCCTCTTCTTCGTCAANCTCTANTTCTGGGTCCGGANGCGGTTCTGGTGCCGGGTCAAAACCGGTTCGTCTGCTGGTTCTAGGGCCGGGTCAGGAACTGGTTCCTCT | |||||||||
gi|73887788|gb|DT490526.1|DT490526 WS02545.B21_D07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_D07 3', mRNA sequence GGTTTTGAACCAGAAACCGG EST sequence (targeted fragment marked with yellow): TTTATCATGGTTAAACCTGATGGAGTTCAACGTGGACTCGTTGGAGAAATCCTTAAGCGTTTCGAAGCTAAAGGTTTCAAATTGGTCGCATTGAAAATGGTTTGGCCATCACAACAATTGTTGGAAAATCATTATGCTGATTTGTCGGCTCGTCCATTCTTCCCAGGTTTGGTGAAATACATGAGCTCTGGTCCAGTTGTTGCTATGGTTTGGGAAGGTTTGAATGCCGTTAAAACTGGCCGTCAAATGTTGGGCGCTACCAATCCAGCAGACTCATTGCCTGGTACAATTCGCGGAGACCTTTGCATCCAAGTTGGCCGTAACATTATCCATGGTTCAGATGCCGTTGAATCAGCCAACAAAGAAATCGCTTTATGGTTCAAATCCGAAGAATTGGTCTCATGGAAACCAGCCAACCCCGACTGGATCTACGAATAAATTGATGCCGGATTCCATTTTATTCAATTTTTTTTTTCTTCAATGAAACATCCAATTATTTGTGATTCTTGAGCATCTTTAACATTGCAACGGAATTTCGAATAAACAAAATGTTATCATTTTAATTCCATCAAAAAAAGCATTGAGCGAATTGCATTTATTGAAGATTCTTTCTGAGAATTGTTTTTTTGTTTTTTTTTTTTTTGTTTTTAAATAATTCTTTTTCTTTCTTCGAGCTTAGAAAAAAAAAAATACTCTAAATTTAATAAAGTACGAACTGAATCAACTCAAACATAAAAAAAAAAAAAAAAAA | |||||||||