miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GTACTAGTATGTGTCACATCG
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|86498919|gb|CI141552.1|CI141552 CI141552 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa

GTACTAGTATGTGTCACATCG
||||||| ||||.|||||||
CATGATCCTACATAGTGTAGA

EST sequence (targeted fragment marked with yellow):
TTTGCGTACTCTATCCGTCCCATAAAAAACTAGATGTGATACATCCTAGTACTACAAATCAGTACATACATATATCTAGATTTATCGTACTAGAATATATCATATCTGGTCCTAGATTCGGTTTTTTATGGGACGGTGGGAGTATCGATGGATTAATTCCATGGCGGTCGGTCTGGACGAGATCATCCTCCTTTCTGCTTGAAGGAGGAGTACATCTGGACAATGGTGGAGACGAAGGTGACGAAGGCGACGAACTCGGCGACCACCGCCCATGGCACCGTGAAGTAGTTGCGCTTCACGTCCGCCCACATCATGAACAGCGGGTGCCGGCTCCTCTCCCGGAGCTCCACCACCATCCCTCCCAGGTAGCTCCGCTCCAGCTCCACCTCGCCGCTCGCCGCCCCGACCTGCCGGAACAGCCTCACCACCTCCTCCTTGCCCTCGCCGCCGCCGTTCCCGTGCACCACCGCCACCACCTCCGCCGCCGCCAGCGCCCCGGCGTCCTCCGCCGACTGCACCATCTTCGCCATGAACGACACGTACGCCGACACGTCGCGCGCCTCCGCCTTCGCCGCCGACTGCTCGAACGCCATCAGGTTCAGCA



gi|109712534|gb|CI105142.1|CI105142 CI105142 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativ

GTACTAGTATGTGTCACATCG
||||||| ||||||| |||||
CATGATCCTACACAGCGTAGC

EST sequence (targeted fragment marked with yellow):
TCTTTTCGCTGTTGAATAATTGATTGTATAGGAAACACATATACAATGATATAAATAACAGCTGTACAATGGAAATGCAAGTGTGTGTGTACACAACTTGGCGGATGAAACCTACTTCAATTCTTCCCCATTTTGAAACATACATTAATTCTCCTTTATATTGCCACCAAAAATTTTACAAAACCTATCCCTAATAATAACCAAGCCATCACACTAAGTAGATCAACTGTTAGGGCTCAAGATTAACCAGAAGATGATGATGATTTTGCCAGTAATTACCACTCCCTCCGTCCCATAAAAAACCAACACTCGATGCGACACATCCTAGTACTACGAATCTAGACATATTTCTATCCAGATTCGTTGTACTATAATGTGTCACATACAGAGCTAGATTCACTTTTTGGACGGAGGGAGTAGACCATATCCATGGCGTCGTCGCGTACAGCGTGTACTTCTCCCAAGAGCGAGAGGAGGAAGAAGAAGGAGAGATGGTCAGC



gi|88960179|gb|CI382057.1|CI382057 CI382057 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone

GTACTAGTATGTGTCACATCG
|||||||||||||||||||||
CATGATCATACACAGTGTAGC

EST sequence (targeted fragment marked with yellow):
GTCAACCTTTTTTGAGCTTTTTTTTTTAATTTTCCTTTTCCTATTACAGCTATAAAAGGTTTTTATCGAACTATGGAGTTCTCTACTCGGTTACATTTCCACTGCCCAACGTTTATGGATGGCGGCAACGCACAAGTTCTGATTATAAACCACTAAAAGCACAATTTTACAAGCATCATATATGTTACATACTCCCTCTGTCCCAAAATAAACCCGATGTGACACATACTAGTACTTGTGTCCAAGATGTATTAGGATGTGGCACATCCGTACAATGTTGGTTTATTTTGGAACAGAGTGAGTATATGTTAAGCAAGACTAATGCGGGCTTCCCTCTCGCTAATCTGTATCCGTTAGCTCCCACCTTGCTTGGGACTTTCTGAACATGAAGCCAAAAGGCACGTTCGATGCACTGAAG



gi|88967014|gb|CI379898.1|CI379898 CI379898 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone

GTACTAGTATGTGTCACATCG
|||||| |||.||||||||
AATGATCCTACGCAGTGTAGG

EST sequence (targeted fragment marked with yellow):
CAGACATCACCAAGTAAATGGATGAATATATGCTGTAGATCCAAAAAAATTGCAGTACAACAGTAACGTTTTCACATATGTTGGGTCTCACAAATATCTATTATGTTGGATAGGGAATGAACAAATTCATCAAAACCTTCAAAAAAATTATTGATGTCAGCGTCACTAGTTAACTTGACAAATCCAGTGGAATAAATGACAAGAAACAAGTATGTTCAAGAGTCAAAACAAAAACATGAACAACTCCCAAAATAAACAAACACAGGATGTGACGCATCCTAGTAATACTAATTTGAACTGACGTCACATCTTATACTAGATTTGTTTTTTTGGGACAGAGGGAGTACATTATAACAAACAATTCAGTTAAAAGAGAAGCAAAGTAAGGCATTACGTCAAAAATATGACAACAGATAATTGCCACACGATACATACAAGGATTTA



gi|88542585|gb|CI471924.1|CI471924 CI471924 Oryza sativa (japonica cultivar-group) whole body 1mM ACC(1-aminocyclopropane-1-carb

GTACTAGTATGTGTCACATCG
||||||| ||||||| |||||
CATGATCCTACACAGCGTAGC

EST sequence (targeted fragment marked with yellow):
GTTTGAAACATACATTAATTCTCCTTTATATTGCCACCAAAAATTTTACAAAACCTATCCCTAATAATAACCAAGCCATCACACTAAGTAGATCAACTGTTAGGGCTCAAGATTAACCAGAAGATGATGATGATTTTGCCAGTAATTACCANTCCCTCCGTCCCATAAAAAACCAACACTCGATGCGACACATCCTAGTACTACGAATCTAGACATATTTCTATCCAGATTCGTTGTACTATAATGTGTCCCATACAGAGCTACATTCACTTTTTGGACGGAGGGAGTAGAACATATCCATGGCGTCGTGCCGTAAGCGTGTACTTCTCCCAACAGCGACAGGAGGAAGAACAAGGA



gi|86880689|gb|CI321080.1|CI321080 CI321080 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

GTACTAGTATGTGTCACATCG
|||||| ||| |||||||||
AATGATCCTACCCAGTGTAGC

EST sequence (targeted fragment marked with yellow):
CGGTGTTGAATAATTGATTGTATAGGAAACACATATAACAATGATATAAATAAGAGCTGTACAATGGAAATGCAAGTGTGTGTGTACACAACTTGGCGGATGAAACCTACTTCAATTCTTCCCATTTTGAAACATACATTAATTCTCCTTTATATTGCCACCAAAAATTTTAAAAACCTATCCCTAATATAACAAAGCCATCACACTAAGTAGATCAACTGTTAGGGCTCAAGATTACCCAGAAGATGATGATGATTTTGCCAGTAATTACCACTCCCTCCGTCGCATAAAAAACCAAGACTCGATGTGACCCATCCTAGTAATAAGAATGTAGAGATATTTCTATCCA



gi|86862079|gb|CI330672.1|CI330672 CI330672 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

GTACTAGTATGTGTCACATCG
||||||| ||||||| |||||
CATGATCCTACACAGCGTAGC

EST sequence (targeted fragment marked with yellow):
CGCTGTTGAATAATTGATTGTATAGGAAACACATATAACAATGATATAAATAACAGCTGTACAATGGAAACTGCAAGTGTGTGTGTACACAACTTGGCGGATGAAACCTACTTCAATTCTTCCCCATTTTGAAACATACATTAATTCTCCTTTATATTGCCACCAAAAATTTTACAAAACCTATCCCTAATAATAACCAACCCATCACACTAAGTAGATCAACTGTTAGGGCTCAAGATTAACCAGAAGATGATGATGATTTTGCCAGTAATTACCACTCCCTCCGTCCCATAAAAAACAACACTCGATGCGACACATCCTAGTACTACGAATCTACACATATTTCTATCCAGATTCGTTGTACTATAATGTGTCAAATACAGAGCTAGATTCACTTTTTGGACGGAGGGAGTAGACCATATCATGGCGTCCTCGCCTACAGCGTGTACTTCTCCCAAG



gi|89176338|gb|CI043359.1|CI043359 CI043359 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone

GTACTAGTATGTGTCACATCG
|||||||||||||||||||||
CATGATCATACACAGTGTAGC

EST sequence (targeted fragment marked with yellow):
TTGGATGCGGCAACGCACAAGTTCCTGATTATCAACCCACTAAAAGCACAATTTTACAAGCATCATATATGTGACATACTCCCTCTGTCCCAAAATAAACCCGATGTGACACATACTAGTACTTGTGTCCAAGATGTATTAGGATGTGGCACATCCGTACAATGTTGGTTTATTTTGGAACAGAGTGAGTATATGTTAAGCAAGACTAATGCGGGCTTCCCTCTCGCTCATCTGTATCCGTTAGCTCCCACCTTGCTTGGGACTTTCTGAACATGCAGCCAAAAGGCCACGTTCGATGCACTGAAGAAGATAGCTGTGAAGCCAATCTAGTGTCTGAGGGAATGAGTTCGCTGAAATGTCAACAACGGTCAACCCCTGCGACTCAAAAGAACAAAGATAGTCCTGAATAAGCTTAAGGTTGTTTATAAGCTTTCGATGATCCTGAGGAAGACAATTATCCCTGGAAGCCCTGGTGGCTGTCCATTCCTCTAGCAATGCCTTGTGATCAAAATCAGACATCCTCAACACAATTGGGACT



gi|88528012|gb|CI456212.1|CI456212 CI456212 Oryza sativa (japonica cultivar-group) whole body 1mM ACC(1-aminocyclopropane-1-carb

GTACTAGTATGTGTCACATCG
||||||| ||||||| |||||
CATGATCCTACACAGCGTAGC

EST sequence (targeted fragment marked with yellow):
GTTTGAAACATACATTAATTCTCCTTTATATTGCCACCAAAAATTTTACAAAACCTATCCCTAATAATAACCAAGCCATCACACTAAGTAGATCAACTGTTAGGGCTCAAGATTAACCAGAAGATGATGATGATTTTGCCCAGTAATTACCACTCCCTCCGTCCCATAAAAAACCAACACTCGATGCGACACATCCTAGTACTACGAATNTACACATATTTCTATCCAGATTCGTTGTACTATAATGTGTCACATACAGAGNTAGATTNACTTTTGGGACGGAGGGAGTAGACCATATCCATGGCCGTCGTCCCGTACAGCGTGTACTTCTCCCAAGACCGAGAGGAGGAACAACAAGGACCAGATGGTCAGCTACGACAACCAATGCCTCCTGTTCCGCGACCGAGTTCACT



gi|88551085|gb|CI481111.1|CI481111 CI481111 Oryza sativa (japonica cultivar-group) whole body 1mM ACC(1-aminocyclopropane-1-carb

GTACTAGTATGTGTCACATCG
||||||| ||||||| |||||
CATGATCCTACACAGCGTAGC

EST sequence (targeted fragment marked with yellow):
GTTTGAAACATACATTAATTCTCCTTTATATTGCCACCAAAAATTTTACAAAACCTATCCCTAATAATAACCAAGCCATCACACTAAGTAGATCAACTGTTAGGGCTCAAGATTAACCAGAAGATGATGATGATTTTGCCAGTAATTACCACTCCNCTCCGTCCATAAAAAACCAACACTCGATGCGACACATCCTAGTACTACGAATCTAGACATATTTCTATCCAGATTCGTTGTACTATAATGTGTCACATACAGAGCTAGATTCACTTTTTGGACGGAGGGAGTAGACCATATCCATGGCGTCGTCGCGTACAGCGTGTACTTCTCCCAAGAGCGAGAGGAGGAAGAAGAAGGAGAGATGGTCAGCTAGGACACCGAATGCCTCGTGTTCCGCGACGGCGT



gi|88531879|gb|CI458397.1|CI458397 CI458397 Oryza sativa (japonica cultivar-group) whole body 1mM ACC(1-aminocyclopropane-1-carb

GTACTAGTATGTGTCACATCG
||||||| ||||||| |||||
CATGATCCTACACAGCGTAGC

EST sequence (targeted fragment marked with yellow):
GTTTGAAACATACATTAATTCTCCTTTATATTGCCACCAAAAATTTTACAAAACCTATCCCTAATAATAACCAAGCCATCACACTAAGTAGATCAACTGTTAGGGCTCAAGATTAACCAGAAGATGATGATGATTTTGCCAGTAATTACCACTCCCTCCGTCCCATAAAAANACAACACTCGATGCGACACATCCTAGTACTACGAATCTAGACATATNTCTATCCAGATTCGTTGTACTATAATGTGTCACATACAGAGCTAGATTCACTTTTTGGACGGAGGGAGTAGACCATATCCATGGCGTCGTCGCGTACAGCGTGTACTTCTCCCAAGAGCGAGAGGAGGAAGAAAAAGGAGAGATGGTCAGCTAGGACACCGAATGCCTCGTGTTCCGCGACGGCGTCGACCTCGTCTCCTCGCCGGGGCTCTCGA



gi|88525419|gb|CI453422.1|CI453422 CI453422 Oryza sativa (japonica cultivar-group) whole body 1mM ACC(1-aminocyclopropane-1-carb

GTACTAGTATGTGTCACATCG
||||||| |||| || |||||
CATGATCCTACAAAGCGTAGC

EST sequence (targeted fragment marked with yellow):
GTTTGAAACATACATTAATTCTCCTTTATATTGCCACCAAAAATTTTACAAAACCTATCCCTAATAATAACCAAGCCATCACACTAAGTAGATCAACTGTTAGGGCTCAAGATTAACCAGAAGATGATGATGATTTTGCCAGTAATTACCACTCCCTCCGTCCCATAAAAAACCAACACTCGATGCGAAACATCCTAGTACTACGAATCTAGACATATTTCTATCCAGATTCGTTGTACTATAATGTGTCACATACAGAGCTAGATTCACTTTTTGGACGGAGGGAGTAGACCATATCCATGGCGTCGTCGCGTACAGCGTGTACTTCTCCCAAGAGCGAGAGGAGGAAGAAGAAGGAGAGATGGTCAGCTAGGACACCGAATGCCTCGTGTTCCGNGACGGCGTCGACCTCGTCTCCTCGCCGGGGCTCTCCGACGTGTCGGAGCTGCTGTTCTNGCCGCT



gi|89183890|gb|CI046455.1|CI046455 CI046455 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone

GTACTAGTATGTGTCACATCG
||||||| ||||.|||||||
CATGATCCTACATAGTGTAGA

EST sequence (targeted fragment marked with yellow):
TTATATTTGATAACAGAGAGAGTAGTACATATATTTTCCTACTGGTGAGCATTTTTCAAATTTAATATATTTTGACGAATGATTCAAATCTACTCCCTCCGTCCAGATGTGATACATCCTAGTACTACGAATCCGGATATACATGTCTAGATTTATAGTGCTATAATATGTTACATCATGTTCTAGATTTGTTTTTAATAGGACGGAGTATAGTATATCCGACCGCTCGAAGAATTAGAGACATTCCTGCTTCATCTTGTGATGTAGCCAACGAAGTCATCCAAGCCTTTCCGCGAGGACCCGCCGTCTGCCACAGACGCGCGGACGGCCTCGCCGAGCTCCTTTGCCCGCCGCCGTATTGTCATCCCTTTCTCAGGCAGCATCGCCTCCTCAATGACCTCCTGGATGGCCTCCGCCGGGACCACCTCGCTGTGCTTCTCCCATGGCCTCACGAGGAGGC



gi|29613210|gb|CB618223.1|CB618223 OSIIEa01P16.f OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa01P16 5', mRNA sequence

GTACTAGTATGTGTCACATCG
|||||||.|||||||| |||
CATGATCGTACACAGTATAGG

EST sequence (targeted fragment marked with yellow):
GCAGGCACTTGGATCTCTAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAGTAAGATCATTTTTTTTTTTGCCAATCTCCTTCTGGTTGAGTTATCTTCATAGAATTTGTCAGTATTCTCTAATTACTCGTAATATCTCAGTTGCAGTACTATAATTAGTTGAACTGGAGCTTGCTTCCACTTATTGTTATGTTTCTTAGTCTGATACCAGGCATTATTTCAATTATAAGGGAACCAGTGAAAAGTCATTGTCACTACTCCCTCTATCGCACGTCAAACACGTCACGATCTCCAAAAATAATCTTTTGCTTATAATTTCTGATATACTATAAGGTTTGTAGCAATAAGGTTTGTAGCAACAAAATTATAACCATATGAAATTAAATTCAAATGTCAATCCAATGATAATATTCACTAATAAAATTTTAATTCATATTATACTAATTGTTGGTATATTTTAGAAGGTGAATCTTAAAAACCAATCTAGTACTGGATATGACACATGCTAGTACTACAAATCCGGACATATATCTGTCCAGATTCGTTGTACTAGAATGTGTCCATAACTCTATATGACCAACAAAGTTAAATGTACAGTGTATCAATGGA



gi|88973483|gb|CI717911.1|CI717911 CI717911 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

GTACTAGTATGTGTCACATCG
||||||| ||||.||| |||
CATGATCTTACATAGTATAGG

EST sequence (targeted fragment marked with yellow):
AAGGTCGTCGCCGACCATGCCTGGTTCACCAACCGATACTGGTTTCCCACCGACACCAACTAGCTACCCTTAATTTCCTACGGCCTACTTCCTCTGTCACGTAAAAAACCAATCTAGTATAGGATACGGCCTACTTTCTCTGTCACGTAAAAAACCAAATCAGTATAGGATATGATACATTCTAAACCAATCTAGTATAGGATACGGCCTACTTTCTCTGTCACGTAAAAAACCAAATCAGTATAGGATATGATACATTCACCAAATCAGTATAGGATATGATACATTCTAGTACTCCGAATATAGATATACATCTATTCAGATTCATCGTATTAGAATA



gi|88283591|gb|CI405037.1|CI405037 CI405037 Oryza sativa (japonica cultivar-group) 11 days after transferring callus Oryza sativ

GTACTAGTATGTGTCACATCG
||||||| ||||.|||||||
CATGATCTTACATAGTGTAGG

EST sequence (targeted fragment marked with yellow):
GTTAACGTGACCTTTTGACTTAGTCAACTTTGTGATGATGGAGCAACCCAGTCACAAATACAGGTAAAGCCCACATTTAAGTGCCTAGGAAAAAATATAAAAAATGTGGGGCCTACTTGCTAGCCACTTTCTCTGAACTCTACTCCTTCTGTCCTATAAAAAAATAATCTACTACCGGATGTGATACATTCTAGTACTACGAATCTAGACATACATATGTTTGAATTAACCCGTACAACCACTGCACTTAATTCCAAATAGCACCTGCATATAAACAAACATGACAAGCTTGTTTGATCCATTAAGTGATATCCAAACAACCTATAAGCAGCAACCCGTACAATGCGTGTTCCATATCCAAACTGATTGATTTGTACCCTGGAAAGGTTGCAAGCCAGAAAACGGTCACTTCATTCTTGAG



gi|88241649|gb|CI241498.1|CI241498 CI241498 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat

GTACTAGTATGTGTCACATCG
|||||||||||| || |.||
GATGATCATACACCGTTTGGC

EST sequence (targeted fragment marked with yellow):
GAAATCAACGCAATTTCTTGGTAAATCCAGTCTCCGGTTTGCCACATACTAGTAGCACGGTGGCACGGTGCCCATCGGCTGGATACCGACCCAACCAGGTCAAGAATTGGGGATCTCACCCAAATACCCAACTCAGGAGCAACGCAACGGTAAATAGACGGGACGAGGGGAAGAATAACCCAGCCATGGCCGTCGCAGCACGCGCCTCCTCCTCCCTCCTCCGCGGCGTGGCCGTGTTGAGGCGGCGGCCGCCGGTCCGATCCATCCACGAGGGGCCCGACACCATCGACGAGCTGCTCGACCGCCACCTCGCCAAGAAGTCCCCCTCCTCCTCTTCCGGGGCGCTCGACGGAGACGCGGCGGACGCCGAGGCGCGCCGCCGGCTGACGAGCTCGCGGCGGGAGGCGCTGGGGCTGTACCGGGACATCCTCCGGGTCACGCGGCTGTTCGAGTGGCCCGACGACCGCGGCGTCCCGTGGCGCGAGGTGCTGCGCGCCAACGCGCGGCGGGAGTTCGAGGAGGCCCGCGGCGAGCGCGACCCGGAGGTGGTGGCGCGGCTCCTCATCGGCG



gi|86873645|gb|CI316307.1|CI316307 CI316307 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

GTACTAGTATGTGTCACATCG
||||||| ||||||| |||||
CATGATCCTACACAGCGTAGC

EST sequence (targeted fragment marked with yellow):
AGATCAACTGTTAGGGGTCAAGATTAACCAGAAGATGATGATGATTTTGCCAGTAATTACCACTCCCTCCGTCCCATAAAAAACCACCACTCGATGCGACACATCCTAGTACTACGAATGTAGACATATTTCTATCCAGATTCGTTGTACTATAATGTGTCACATACAGAGCTAGATTCACTTTTTGGACGGAGGGAGTAGACATATCCATGGGGTCGTCGCGTATAGCGTGTACTTTTCCCAAGAGCGAGA



gi|88693513|gb|CI737088.1|CI737088 CI737088 Oryza sativa (japonica cultivar-group) 1 nuclei stage pistil Oryza sativa Japonica G

GTACTAGTATGTGTCACATCG
.|||||| ||||.|||||||
TATGATCCTACATAGTGTAGG

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTAAATGTACATATGGGTTGAAAATTTTGCACATAATTTATATATCCAATCATACCAGGTACTCTCTCCATCCCATAAAAAACCAACCTAATACCGGATGTGATACATCCTAGTATTACGAATCTGGACATCCCTCCGTCCCTAAAAAGCTAACCTAGTAGACACATCCGNGTAACTAAGGGTTNGGGTTTTTTATGGGGGAAATTGGGGAGGAAGTAAGGAATAAGCACATTATTTTATTATTGTGATATTGTCACAGTGTGTTAAGAACAAACTGAGTTAAATTCGGTTAGTTTTCTTGTATGGAGATTGGCTCCAAAGAAAAACAAGAGGTGTGGATTGGATTTGGTTTCGCTGT



gi|29615816|gb|CB620828.1|CB620828 OSIIEa06E16.f OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa06E16 5', mRNA sequence

GTACTAGTATGTGTCACATCG
||||||| ||||||| |||||
CATGATCCTACACAGCGTAGC

EST sequence (targeted fragment marked with yellow):
CTTTTTTTGGCGGATGAAACCTACTTCAATTCTTCCCCATTTTGAAACATACATTAATTCTCCTTTATATTGCCACCAAAAATTTTACAAAACCTATCCCTAATAATAACCAAGCCATCACACTAAGTAGATCAACTGTTAGGGCTCAAGATTAACCAGAAGATGATGATGATTTTGGCAGTAATTATCACTCCCTCCATCCCATAAAAAACTAACACTCGATGCGACACATCCTAGTACTACGAATCTGGATATATTTCTGTTCAGATTCGTTGTACTATAATGTGTCACATCCAGAGCTGGATTCACTTTTTTTTTTTTTTTTTGGATGGAGGGAGTAAACCATATCCATGGCGTCGTCGCGTACAGCGTGTACTTCTCCCAAGAGCGAAAGGAGGAAAAAAAAGGAGAGATGGTCAGCTAGGACACCGAATGCCTCGTGTTCCGCGACGGCGTCGACCTCGTCTCCTCGCCGGGGCTCTCCGACGTGTCGGAACTGCTGTTCTCCCCGCTGCTTGCCTTGCCAAAACACAGCTTGCTCAGTATCTTCTTCGGGATTAGCCCGCCGCCGCCGCTCCCCTTTGCTGACGCCGACGACGGGGGCGGCTTCTTGCAGGCGGCCTGA



gi|87014714|gb|CI269421.1|CI269421 CI269421 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat

GTACTAGTATGTGTCACATCG
|||||||||||||||| ||
CATGATCATACACAGTTTAAG

EST sequence (targeted fragment marked with yellow):
GACATACTCCTCTATCTCCAAATAAACCAAGTTGTACAGAATTTGACACATACTAGTACTATAAATCTGAATATAAATCTGAATAGATCCTAACATAGTATAAGTACTAGATTGGTTTATTTTGCAACTAATGGTGTATGCACAATATGACACAGAGTACTGAATATACACTAACCATGGCATATAGACAATAAACTCATGATGCAGCCTGCCGCAAAGAGAAATTTCAGCTTCTTGTTCCGCACTACAACTTCATTTCAATTCTGGAGTACTGAATTACTGGTACCAAGACAGAAGGCACAGTAATGCAACTCTGCCAAATTTCTCCCGTCCATATAAGGGAACAATCATGTCTGCTGCATTGGACAAAATATACAGCTATGCACACATCGAAGGCTTCGAAGCTACTATAGTGCATCTTATTTATGCTACGAGCTTTAGATCTTAAGAAGAAAGGAAAGGCCAATTAGATGCTCCATTCATTTTCTACATCTAGACAGAGCCAAAACACTTCAGTGACCATCTTCCTTTGGCTTCTCCTTTGGAATAT



gi|117221721|gb|CT852809.1|CT852809 CT852809 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

GTACTAGTATGTGTCACATCG
|||||| ||||||||||||
AATGATCTTACACAGTGTAGG

EST sequence (targeted fragment marked with yellow):
TCAAGCCATGATAGCTCTGAATCGGTTTCTGCAAAGCAAGGTGCCGGCTGCCTGAATTTTCAGTACAACGAGTGGAGCTCGCCCTACGAGAGAGTCCCGCTAGCAGATAAGGTGGCAGAGCTGGCTCAGCATTATCCATGCTTGACATCTCTCAACAGTGCACAACTTTCACCTTCGAGCTGGATGTCTGTAGCATGGTACCCGATTTATCATATCCCAGCTCGTGGAAACCTCAAGGGGTTATCTACGTGTTTCCTAACCTATCATTCCCTCTCCTCAGTTTTCCAAGATAATGTTGAGGAGGGGAGGAGCGTTGTTGGTGTTTCGCCGTTTGGGCTGGCGACGTACAGAGCGGAAGGGAAGCTGTGGACATCGTCGAGGAGCTCTGATCTCTTCTGGGCAGCGTCTTCTTGGCTCAAGCAGCTGCGAGCTTACCATCCTGACTTCATCTTCTTCACGTCTCACTGCCGGCAATCTGCATTCTGAACCTGACGCTTGTTGCTTAAGCTTAATTATACTCGATACTCAGCCTCCGGTGGTGCTAGAAGAAGGCCAAACTAGGATGGAGGAAATTGTTTTGTCAGTCACCTTGCGAGCTATACTGAATTTAAAGGACTTTTTTTTTCATCAACAGCAAGTATGTTGTACTCCCAAAAAAAACAAATCTAATACCGGATGTGACACATTCTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAATTTAATTAAAATAAAAAAAAAAAAAAAAAAATAAAATTTTTTTTTTTTTAAAATATTAATAAAAATAAAAAAAAATAAAAATAAAAAATAATAAAAAAAAATTTTATTTATTTTTTGGTTTTTTGTGTTTTTTTTTTTTTTTTTTTATTTTTTATTTTTTTTTTTTGTTTATAAAATATGGGTGTTGTTGTTGTTTTTTTTTTTTTTGTTTTTTTTTTTATTTTTTGGTGTGGGGGGTTTTTTGTATTAAGAATAAAAAGTAAAAAGGGGGAGGGGAGAGGAAGAGGGGGGGAGGGGGGGGGGGGGGGGGTGTGTGTCGGGAGGGGGGTGGGGGGGGGGACTCAAAAGTAAAAAGTGGGA