| mature miRNA: GTACTCCCTCCGTCTCAATAA species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|268804881|gb|CN607180.1|CN607180 SUL01-010F-H01-012.b Sugarcane leaf whorl library Saccharum hybrid cultivar CoS 767 cDNA clo GTACTCCCTCCGTCTCAATAA EST sequence (targeted fragment marked with yellow): CGGGAAGAAGTACGTCATTCTGTTCTTCTACCCCTTGGATTTCACCTTCGTCTGCCCGACCGAGATTACTGCCTTCAGTGACAGATACGAGGAATTCGAGAAGTTGAACACTGAGGTTCTTGGCGTCTCCATTGACAGTGTGTTCTCCCACCTTGCATGGGTGCAGACAGACAGGAAGTCCGGTGGGCTTGGCGATCTTAAATACCCACTTATTTCTGATGTCACCAAATCAATTTCAAAGGCCTTTGGTGTTCTGATCCCTAGCCAGGGTATTGCTCTGAGAGGACTGTTCATTATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATCGGTCGTAGCGTGGATGAAACCATGAGGAATCTTCAGGCATTGCAGTACGTCCAGGAGAACCCAGACGAGGTGTGCCC | |||||||||
gi|36009125|gb|CA280799.1|CA280799 SCVPFL4C11D09.g FL4 Saccharum hybrid cultivar (mixed) cDNA clone SCVPFL4C11D09 5', mRNA seque GTACTCCCTCCGTCTCAATAA EST sequence (targeted fragment marked with yellow): CGACCGATTGATGCACATTGAGCGCAAGGCCTAGCTAGCTATAGTGGTCGATCGTACGTAGTAAGTACCCGCTGGGGCTACGCAAGCTGAAGCATACTCCCTCCGTCACATAATACCCGTCGTTTTTTGTCGTGCCACAAGTTTAACTCGATTTGTAGAAAATACGTGCAATATTTGTATCTCCAAATAAATTTATTAAAAAACTAGATTCAAAGATCTTTCCAATTATATTTTAAATATTAATATTTTTTAATATATATTTTGTCAAAGTTGTTTCTTGGAAAACAAAAACGATTGATATTTTGGTACGGAGGGAGTACGCATGGTTCCAATAGAGACGGTAGACACGGTACACATCGGAACATGCATGGTCATACCGTGTTATATACTACTGTTTAATTATTATCAGTTCATTTGTTTCTGGCATGGCTTAGATGCCCGATTCGGGGCACTGAATAGCTACAGTGCGCAACAAATGCGTACTATAGTAATTTTGTTTTTATATGGTAAAAATTGTCTAAATTTTGACTAATTAGGCTCGAAATGTTCGTCTCGCAAAGTATAACAAAAATGTGCAATTAGTTTTTGATTTCATCTACATTTAGTACTGCATACATATGCCGATATTTCGATGTGACGGAGAATCTTCTTTTTGCATAGTAAAATTTAGGGATGAATTTAGGGGCTTG | |||||||||
gi|36041242|gb|CA289384.1|CA289384 SCAGFL8004E04.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCAGFL8004E04 5', mRNA seque GTACTCCCTCCGTCTCAATAA EST sequence (targeted fragment marked with yellow): ATTTATTTGATATCATAAATATTAATATTTTTTTATCTATAATTAATTGAACTTGAGATACTAAACTATGACACTGTGCTAGAATTGCATGTTTTCTTGGACGGAGGGAGTACATTACATTGAAGGAGGTAGCCTGATACAGGGTGCTAGTAAAATAATTTTAATGAATATCAACATCCATCTGAAGCTAAGCCATGACTAGCGTTAAACTTTTCATGATGCCTATTGTGCAAGACATACAGGTAAAAGGGTCAATGCTAAATTGCTAGTGAAATAGACAATCACACAATGATATTACCTTATTTTTAAGCACTGCCTATTAGGTCTTACTTCTATTCAAGTTTTAAGCATTCTCAGTTGTGTTTCGGTAGTGGTTTTATGGTTATATGCAGACTTCCTTGCTGCATTCACTGCTGAATTTGCACCCAAATTTAACTTATGAATTAAAGTATTTTCTGCTTAGATGTTCTGCAATTGTGGAATATGATGGTTACCTTTTCATGTACCAAACAATTTTGAAGGTAAAATGCACANCCTGCCATTCAATTTTTCCTGCTACTTCAAGCGCAGCTCTTGGGAGTTCATAGCTGATATAAATTGTCTAAATGCATGCAATATCATCAAATGTTGTTGTCAGTTTGTGTCAGTATTGAAACGCTGCTCCTTGACTTANAACAGCCATAAACCTCATATTTTT | |||||||||
gi|268781594|gb|DN194407.1|DN194407 SUM01-008F-E11-083.b Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 GTACTCCCTCCGTCTCAATAA EST sequence (targeted fragment marked with yellow): TGACAATTTTGGATGAGCTTCTGCCTATCTCCATTGAGATGGCGAAACGGGACTGCAGAGGAATATGGAACTTCACCAACCCTGGTGTCGTTAGCCACAATGAGATTCTAGAGATGTACAAGAAATACATCAATCCTGATTTCAAGTGGACCAACTTCACACTCGAAGAGCAGGCCAAGGTCATAGTCGCACCTAGAAGCAACAACGAGATGGACGCGTCGAAATTGAAGGCTGAGTTCCCTCAGCTGCTGTCCATCAAGGACTCTTTGATCAAGTATGTCTTTGAGCCAAACAGGAAGGTTCCTGTTAATTGAGGATTTAGGTCACGGGGATGTGGAGGTTATTTGTATTGGTTGTTATTGGACACTAAATTAGCTAATGTTGCATGGTGGTCCGTACTAGTTGTGTTCGATTCTTTTGGGACAATAGCAAGCATACCTTTTTCTCGTCGTTGTTATATACTCCTCTGTCCCTTAACATGTGTCTGTAGAAAACCATGTTTCCCTCACAAACACGCTTCTCGGGCGACACTTAAAAGGGGCGACACTTAAAAGGGACGGAGGGAGTACGCAACCTGTTTGTACAAACAGGTACATATTTAGATGTTCTATATAGTGGCTGATATGCCGAGACACTGTTATCGATGAACACTACGAAT | |||||||||
gi|35981239|gb|CA271544.1|CA271544 SCBGLB2074F02.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBGLB2074F02 5', mRNA seq GTACTCCCTCCGTCTCAATAA EST sequence (targeted fragment marked with yellow): CGGACGCGTGGGCGGACGCGTGGGCAAATTTTTTGTATAAATATCATTTATTTTGTTATGACTTATTTTATCATTAGAGATACTTTAATAATGATTTATTTATTTTATAATTTACACAAAATTTTTAAATAAGACGAACAGTCAAACACGATGTCTAAAAGTAAAAAACGTCACTCTTTTTGGGACGGAGGGAGTATATAACTTTTAAGTTATTTAGTTTATGATTGCTGTGTCTTGCTTTATCGGCTACTGTTTTTTTAATTTTCATGCTATAAAATGGTGGAATTGCCTGTGGAGTTACATGAATGCTTTCTACTGACTTTAGTTGAGATGTGTGCCAATGTATTAGGTCCAATTCCACTTGCTATACCATCTTTTTTCCTTATTTTACTGGGGATTGTTGTTGTTGAATAACCTGCTGATAATACTGCTCCTTCTTTTGTGCTTTTATAATCTGCCAGAGGTAACTAGTTAACTATAAAATCTGAGAGGATGCTACCATGTGAATTATGTTGTTCCTTTTTCCTAATTGGGTAAAATGCGCTAATGGTTTCCTATGCCTAAAATTGAATTTTGAGTTGACTATGTTTCTTATTGCGATGTTTGGGGCACATAAGTATAGTGCTTCTATTAACTCTTGGGGGAGGCTAAAATCTTCGGGGTAATTAATGGGTTG | |||||||||
gi|36000075|gb|CA277692.1|CA277692 SCSBSD2030D10.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCSBSD2030D10 5', mRNA seque GTACTCCCTCCGTCTCAATAA EST sequence (targeted fragment marked with yellow): AGCTTTTATGGGAAGCGTGCCAGTTAAACTGACTCAAGTTTGACCAAGTTTACAGTAAATAGTATTAACATTTATGCCTCCAAATAAATTTATTAAAAAAATATATTCTATAACTAATCTAATGATACTTATTTTATATCATATATATTAGTATTTTTTTTTTATATAAATTTAGTCAAAGTTCAAACTGTTTGACTTCTCGAAAAGCGAGAATTGCATGTTTTTATGGACGGAGGGAGTACTATGTATTATTCGGGTCCAGCTCATCTGTGAAATCATTTGTTCTTGTGATGTAGTACTATATAAATCAATGTAACGTAAGGATGGATTTATC | |||||||||
gi|36041175|gb|CA289365.1|CA289365 SCAGFL8004C07.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCAGFL8004C07 5', mRNA seque GTACTCCCTCCGTCTCAATAA EST sequence (targeted fragment marked with yellow): ATCCCCTCCTCATCCACTCCGGGCGGCCATGGCCTGCTCCTTCGCCGCCGCCACCACCGTCTCTTCCGCCCCCACCCCGGCCGCCAGGCCCCTCGCCGCTGCCCCGCAGTCCGTCTCCGTCGCCCGCTCCGCGGTCGCCACCGCCGCCAGGCCGCTCCGCCTTGCCGCCTCCAGATCCGCGCGGGCCACCAGACTCGTCGCCCGCGCCGGCGGCGTCGATGACTTGCCGCTGGTCGGGAACAAGGCTCCAGACTTCGAGGCCGAGGCCGTGTTCGACCAGGAGTTCATCAACGTGAAGCTCTCTGATTACATCGGGAAGAAGTACGTCATTCTGTTCTTCTACCCCTTGGATTTCACCTTCGTCTGCCCGACCGAGATTACTGCCTTCAGTGACAGATACGAGGAATTCGAGAAGTTGAACACTGAGGTTCTTGGCGTCTCCACTGACAGTGTGTTCTCTCACCTTGCATGGGTGCAGACAGACAGGAAGTCCGGTGGGCTTGGCGATCTTAAATACCCACTTATTTCTGATGTCACCCAATCAATTTCAAAGGCCTTTGGTGTTCTGATCCCTANCCAGGGTATTGCTCTGAGAGGACTGTTCATTATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATCGGTCGGAGCGTGGATGAAACCATGATGAATCTTC | |||||||||
gi|36005511|gb|CA279559.1|CA279559 SCBFLB2095G11.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBFLB2095G11 5', mRNA seq GTACTCCCTCCGTCTCAATAA EST sequence (targeted fragment marked with yellow): CCACGCATGCACCATGCCGCCATCGCACGGAGTCTCCAGCAGCCACCTATGCAGAGGGCGACTGCAGCAGCGACGGACTGGCGTGGTGGGCGAGCACGCGCGGTGGGCGCGCACCCGCGGCAGCGGCGCCGATTGCTCGAACGCTCGACGACATGGGCAAGGGCACCACGGCGGCCAGCGGGAGCCACGGTAACGCCGCAGGTGCGCGCGGGCTGCAAGAGCTCGTCCTCATCGGCGTGGAAGATGGAGGCGAGGTCTAGCGGCTGTTGCGGCCGAAGCGTGCTCGTGAGGAGGAGCCGAGGCGGCGGCAGCGAGTGGCCGAGGTCGGACATGGCTACAACGTCACATGCTGGGCGAGCTCGACCAAGACAGCGGCTTCCGCTTGGCTGCCGGTGTGCGTTGGATGTGTGGGTTGAGCTTGAGCATGTGAGGGCGTGAAGGTGGCCCTGGTGGAGAAGGAGATATTTTACAGGGGCATTACTGTCATTNTGCCTTTGTCTTGGGTNTTGTGCCCATTCCCAGAAGTGCAAATATTTGTTGGACGGAGGGAGTATTATTATTTTTCGACGGGTGGTGATTGTATCCTTTTCCGAGGACGTAACTAGATATCAGCTTCGAAGCCGTTTTTCTTCGCCGGGCCGCCTGGAACTGTGGGCACCGGCACAACCGTTGACAGGGCCCAGTGTTCTCCCTCGCCGGGCGATGTNGACGCCGGATGTGCGGACGCTTGGCGTACCTTTAATGGCGACGAGTTGGTTACTGGACCAGTTACCTTTNGGACCCGGGTAGTAAATGTAAGTCTTTTGTGTCTGGGCATATTCTTGGCCCCTCGATAATTTTTGTGATATGGGTGGTTCTACGCATTATTTTAGGTAATCAGTAGTCCTTCTGTCAGAGATGTATGTGGGACGGTTTGGCCTACGGTTGAAATCTACGATGTCAGGGAATCTTGTAAGTTGTTAGTCAATACGGTTAGTTACAACATAATACCTGTTTAATATAATGAT | |||||||||
gi|36018439|gb|CA283628.1|CA283628 SCSBSD1057C05.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCSBSD1057C05 5', mRNA seque GTACTCCCTCCGTCTCAATAA EST sequence (targeted fragment marked with yellow): AACAGTAATACTGTCAGTAGAGCTCTGTACTACTCCCTCCGTCCCATTGAAAGTGTCGCCCGGGAAACGTGTTTGTGAGGGGGGCACGCTTTTCCAACGACACTTTCAATGGGACGGAGGGAGTAGGCCGAGAACTCAAACCACAAAAATGTCAGAGGCAGAGGCCGTGCGTGTGATCGGCCTATGGCCGAGCCCGTTCGTGATCCGCGTCCTGATCGCGCTGAAGCTGAAGGGCGTCAAGTACGAGTTCGTGGAGGAGGTGGTGGGCAAGAAGAGCGAGCTGCTGCTCAGGTCGAACCCGGTGCACAAGAAGATCCCCGTACTGCTCCACCACGGCAAGCCCATCTCCGAGTCTCTCATCATCGTGCAATACATCGACGAGGTGTGGTCCTCCGACGCGCCGGCCTTACTCCCCGTCGACCCTTACACCCGTGCGGTCCATCGGTTCTGGGCACAGTACGTCGATGACAAGGTCCCTTCAGCGATCCGCATACTCATGGGAACGGATGACGAGGGCAAAGACGAAGCGGCGGTGCAACTGTCCGCTGCCCTGCAACTGTTGGAGGAGGCTTTCGCGAACTTCACCAGGGGGAGCACTACTTCGGCGGC | |||||||||