| mature miRNA: GTATAGCATCATGAGCAATCA species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|219267302|gb|FG806647.1|FG806647 K024D11 Cassava root 210-day-old plants cDNA library Manihot esculenta cDNA, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTCTAAGTCAACTCTGCGTATATACCCTAGTAAAAGGGTCCTTATACTGTTATGAGCGAACATTAACTAGTGGGGCAATTGCAGTTGCAGCTGTTAACACAGTTTAAACTTCATTATTTATTGAATTGGTAATTATCTTGAGAGCGAGCTATCTCTTTGAATCCATTTCAGAGGTGTACGATTTTATGTCGATGAAAAGTAAGGATGCTTGACCCAATAAGGTTTCCATTGAATGCTCTTGATGCTTTATTCTTGATATTATATACCATAAGCTCGCAAAAAGATTTGTATGATTCAAGGCTATCAACAAGGTATTAGTATACAATCTATAAC | |||||||||
gi|219258101|gb|FG806591.1|FG806591 K006B02 Cassava root 210-day-old plants cDNA library Manihot esculenta cDNA, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GCTGACAGATGTGTAATGACTCGAACGCCCGCAGGGAGTGTATCATCAACTGTGTCATAAACTTGATCTATCGACTCCGCAAGTCTTCTAAGTCAACTCTGCGTTGATACCACTGGTCAAAGGGTTCTTTATACTGTTATGAGCGAACATTATTTGTGGGGCAATTGCAGTTGCAGCTGCTGCCAACAGTTTTAGCTTCATTATTTATTGAATTGGTAATTATCTTGAGAGCGAGCTATCTCTTTGATTTCCATTTCAGAGGTGTACGATTTTATGTCGATGAAAAGTAAGGATGCTTGACCCAATAAGGTTTCCATTGAATGCTCTTGATGCTTTATTCTTGATATTATATATCATAAGCTCGCAAAAAG | |||||||||
gi|219230468|gb|FG806362.1|FG806362 K084D06 Cassava root 210-day-old plants cDNA library Manihot esculenta cDNA, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): ACATTTGATAATACACTTCCTCGCGGCCTGGAGTGTATCATCCCCTGTGTCATACCCTTGATACTTTCGTACTCGCAAGTCTTCTAAGTCAACTTCTGCGTAGATACCAGCTGGAAAAAGGGTACTTTATACTGTTATGAGCGAACATTATATGTAGGGGCAATTGCAGTTGCAGCTGATGCCAACAGTTTTAGCTTCATTATTTATTGAATTGGTAATTATCTTGAGAGCGAGCTATCTCTTTGATTTCCATTTCAGAGGTGTACGATATTATGTCGATGAAAAGTATTGATGCTTGACCCAATAATGTTTCCATTGAATGCTCTTGATGCTTTATTCTTGATATTATATATCATAAGCTCGCAAACAGATTTGTATGAA | |||||||||
gi|164390526|gb|DB955385.1|DB955385 DB955385 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_052_M1 GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CACTCTGCAGGTCGGAAGTGATAATGGAGCAGACTATTGGGCTCCGGCTCTCGGAGGAGGAGGATTCCGATAGAAAGGAATATTCCGGTGGATGGTAGCACACAAAGAGCTTCACAACGATATAACATCATGAGCAGTCACTCTGCAAAAATCTAAGGCTGATTGCTCATGATGCTATACAATTAATGTAGCTATATGTGTGCTTTAGCTTGGACTTGTACATGTCCAAAATTATTACCCTCTCTACGTCTTCCTCTCTAATTTAAGATTAAACTTACGTATGTTCTTCCTTAATTAAGCAGCTGTTAGCAGTTAAGAATGTTGATTTTCATGTATATGCAGTTCTAGTATGATTAATCATTTTAATGCTGCTTTCTGGGAGCAGCATTCATG | |||||||||
gi|119015856|gb|DV450815.1|DV450815 CV02005A2F08.f1 CV02-normalized library Manihot esculenta cDNA clone CV02005A2F08.f1, mRNA s GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TGGACGTAGTAAAATCTGGTTAACACAGATGGAGAAAGATAGTCGAAAGTGTTTATTCCAGATGGAAGAAATGTTTCATTTCTGTTTAGGTATACCATTGGATGACTAAAATTCTTTATTTGTCCATCCTCTCATTTTGGTACCTTGTGTTGGATGCTCATGTTGCTATAGCCAAATCTGGGCAGCTGAGAGATGCTGCATAAAGGAGACTGCATTA | |||||||||