| mature miRNA: GTCAGACCGGCCGTGCAATGCCGGT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|112787176|gb|EE592197.1|EE592197 NEW_RNG09-A04 Rice mixture of leaf, root, panicle Oryza sativa Japonica Group cDNA, mRNA seq GTCAGACCGGCCGTGCAATGCCGGT EST sequence (targeted fragment marked with yellow): CTCGATTACAAATGGAGCATGAGTTTCATGATTATTTTAAAGATGCAAGATTGATGGAGAAAAGACCGGTTGATGATTCATCGGTCACTTGTGAGACAATTTCGGTTACATCTATGCCTAAGACCGGAACTGTTAGTGATCCTCTCCCTATAGTCCTATTGATGTAGACAAAAAGAAAGGGAAAAGTGTTATTATTGGGGATCTTCGGCCTAAGAATAGGATCAAAAATGCGAAGGCCGAAGATCATAAAGTTGCAAAGGATGGGTCATCTAATTCCCAAAAGACCAAAAAGCCGAAGCTCACTTTTGAGATGCTTATGGCTAAATACAAGAAAGGATTAGCCGGTCAATGATTTGATAACCAAACTAGTGATTTGAAAAGACCAAGATCATCTCGTAGGAAGAGATTTGGTCAAACATCAAAGCAATCAGAGCCATCAACCATACCAACTCCATATAAACCTCCGGTTGTGATACCATGGTATCCATATCCAATGTCACTATATGGTTATCCTTTTATGTATTATATGCCATGGATGCCTCAACCACCTATGTCGTGTCATCAAGAATGGAAGCAATCACCTAGGACAGTGCCAAATCATTCATCTAATTCAAGACAAGACCGTTTCCCACAGAAGAATCGGTCCGATGGATCAAAGGTGAAAAAGTTTAAGAAGGTGTGGGTGAGGAAAGAAGCCAAAGCTCCGGAGGTCGTTGCTGCCAAAGATGAGTCTCAAGATGTTCATATACCTACTGGAGATGCAGTGGAAACCACGCAGGCAAAGGAGATCGAAGCCGACGCCGTGACTGCCAACATTGGGGGTCTAGCCGAGACAGCTAGCCGGTCTAACCGCCAGTCTACGGCCGGTCTGACCGACCTTACTGGTCGGTCTGACCGACGGCTTGTGGCCGGTCTGACCGGGCTCAGAGGCCGGTCTGACCGGGGGGCATTGGAGAAGAGTGGGAAAATTGAGAGCAACATAGGAGCTTCCACTTCGACCAAAAATATGAAGAATCATTGTTTAGCTCCTGGAAAACAACCACAGCCGAAGTGGATACCTTCTGGCTTATCTTGCTCTT | |||||||||
gi|58595942|gb|CK006470.1|CK006470 26107rsicef_1273.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G GTCAGACCGGCCGTGCAATGCCGGT EST sequence (targeted fragment marked with yellow): GCACGAGGGAACAGGCATGCTTAGTTGTTCGACTAGGATACCGCATCATCGTTTGACTAGGATCTCCGATACCTTCCTTTCCTACAGGGAACATTGTACAATATTAGTCGGCTTAAGCAATTTCGCTCGTGGCAACTTTTGCCATGACTCTTCTCTTATTCTGACTTTAACAACATTTTCTACTCCCTCCATACCATAATCCCATAATGTAGTAATTGTAATCCAGTACCAGGTTAAACGCTAGAGGATGTACTGCGAGTCTAAACTGATATTCTGTCCATCTACTTGGTTCTTATATTTTTGGAATGTAGATAGTACTTGCTATCTGTTTACACCCAAATTTGGCACTTAGGATTAAAATAGAAAAGATTGCCAAAATTTGGAAGTCTACCGGTTTCCTCCGAGTGGGCCGGTCTGACCGCTGTGTGTTGGGTGGTCAGACCGCCGGTTGAGGGCCGGTTAGACCGGCGGTGTGTGGCCGGTCTGACCGGCAGGTCCGAGTCCAACTGTGTTTCGTCGCGTTTCGAGGTTTCCTTGATCGGGA | |||||||||
gi|88726256|gb|CI749911.1|CI749911 CI749911 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro GTCAGACCGGCCGTGCAATGCCGGT EST sequence (targeted fragment marked with yellow): AAGTTAGTGACTGCACAGTATTTTTACACCCAAATTTGATATCTAGGATTAAAATAGGAAAGATTGCCAAAATTTAGAAGTCTACCGGTTTCCTTCAAGTAGGCAGGTCCGACCGCCGTGTGTTGGGCGGTCAGACCGCCGGTTGAAGGCCAGTCAGACCGGCGGTGTGTGGCCGGTCTGACTGGCAGGTCCGAGTCCGACTGTGTTTCGTCGGGTCTCGAGGTTTCCTTGCTCGGGAAGGCATGTTTCGGGTTNTCTTTAGTTTCTACCCCGAGTTGGACATGCAGGAGGGCCTGTAAAGGGTAAGATCAACCCCCTATATAAGGGATATGGCCGGTTCTATTGTAAAAAACCAATCGAATCGTNTNTCATATTGCTTT | |||||||||