| mature miRNA: GTCGCTGCGGCTTAGGGTTT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24072733|gb|BU881209.1|BU881209 UM59TH11 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GTCGCTGCGGCTTAGGGTTT EST sequence (targeted fragment marked with yellow): GAGGGTTTAGAACAGCCACAAAGTAAAGAGAGGGGAGGAGAAACCCTAAGCCGCAGCGACAATGGTGAAGTTTCTCAGACCCAACAAGGCCGTCATAGTCCTCCAAGGCCGATATGCTGGTCGCAAGGCAGTGATCGTCAAGCACTTTGATGATGGAACCAGAGACCGCCCCTATGGTCATTGCTTGGTCGCAGGGATCAAGAAGTACCCAAGCAAGGTTATAAAGAAAGACTCGGCCAAGAAAACAGCAAAGAAATCGAGGGTCAAGTGTTTCGTTAAGGTTGTTAACTATCAGCACCTGATGCCTACTAGGTATACTTTGGATGTGGATTTGAAGGACCTTGTTACTCCTGATTGCTTGGCAACTAAGGATAAGAAAGTCGTGGCTTGTAAGGAAACAAAGACAAGGTTCGAGGAGAGGTTCAAGACTGGGAAGAACCGTTGGTTTTTCACCAAGCTGAGGTTTTGAAGGAAGGAAAATGGTGCCGACTCTAAGGTTTTGTTTGGGTTTTAATGTGTTATTTTTA | |||||||||
gi|52496304|gb|CV243329.1|CV243329 WS02518.B21_I24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02518_I24 3', mRNA sequence GTCGCTGCGGCTTAGGGTTT EST sequence (targeted fragment marked with yellow): AAGATTCAGCTACCAGTTTGACGTATGCAAGATTTCATGGTGTAAGGAAGCATACATTGAAGACAGACATTATTAATTTATTTGAAGGCTCTAATTTGACACCGATGATATTATAGTCGTTCACCACCGCTTCAATAATAATCCCTATGCTGCAGCGATAAAATTTCCTTCTAGAAGAGCATATGATAATGCTCAGAGGTCACTCACGCGGGCGGGCCGTATATACAATTTGGAAAAGACTCCGCCTACTGTGTGGGATGCCGCACTTCGAAATTCTTATGATGGAAAAACTGTTTTACTGGAAGGACTCCCTCCAAATGCACTTAACGAAGATATAGAGCGCTTCCTGTCTGGCTGTAAATTTGTTCCATCCTCAATCAGGACGTTTGTAAAGTATCCAGATCCCGTTATGTCTGCAGGAAGAAAGAATCCCACCACTTCTGCAGGAAAACAAGATGCCACTACCTCTGAAGAAAAAAGAGATCCCATTAGAATGGCCACCGTACTCTTTTCTACACGGACTGAGGCGATGAATGCCTTAATTAAAAAGAATCGAGGCTTCTGTCTCAATAATCAAATCTCAGTGCGGGTTCTCCATTAAAGGATTTTTGCACTATTTGGCCACCTTGTTTCACTTCAAGATTGAAAGTAGAGATGGATATGTGGTAATAGGTACGCTCGCCGTGCCTGAAACACAGCATAATTTACTAAGAACATAAAGGACGTCATGTTTTTTTGGAAGCATTGAATATTTTTGACGTTTCAATTATCATGAAGGAATACAAGCTGGCAGCTACTGCAATTTCTCCTTTTTCTCCCACGACTTTTAGATGGGAATTGGTATGGAATAACACTATCTGGTGGCTCTTTAGAGCACAAAATCGGATGTTCTTTCTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73894705|gb|DT497443.1|DT497443 WS01126.BR_H21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01126_H21 5', mRNA sequence GTCGCTGCGGCTTAGGGTTT EST sequence (targeted fragment marked with yellow): TCCCCGGGGTTTAGAACGGCCACAGAAAGTAAAGAGAGGGGAGGAGAAACCCTAAGCCGCAGCGACAATGGTGAAGTTTCTCAGACCCAACAAGGCCGTCATAGTCCTCCAAGGCCGATATGCTGGTCGCAAGGCAGTGATCATCAAGCACTTTGATGATGGAACCAGAGACCGCCCCTATGGTCATTGCTTGGTCGCAGGGATCAAGAAGTACCCAAGCAAGGTTATAAAGAAAGACTCGGCCAAGAAAACAGCAAAGAAATCGAGGGTCAAGTGTTTCGTTAAGGTTGTTAACTATCAGCACCTGATGCCTACTAGGTATACTTTGGATGTGGATTTGAAGGACCTTGTTACTCCTGATTGCTTGGCAACTAAGGATAAGAAAGTCGTGGCTTGTAAGGAAACAAAGACAAGGTTCGAGGAGAGGTTCAAGACTGGGAAGAACCGTTGGTTTTTCACCAAGCTGAGGTTTTGAAGGAAGGAAAATGGTGCCGACTCTAAGGTTTTGTTTGGGTTTTAATGTGTTATTTTTAGACATTTTTTAAGGAGCATTGTTAAGGTTTTGTAGTTTTTTTATGGTGCTAGTTTGAATCTGCTTGGATTTAGTTATTTTTGGAATTATTAATATAAATTGCACTCTTAATGTCTA | |||||||||
gi|73890849|gb|DT493587.1|DT493587 WS0111.BR_N03 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_N03 5', mRNA sequence GTCGCTGCGGCTTAGGGTTT EST sequence (targeted fragment marked with yellow): GCTAGGGTTTAGAACAGCCACAGAGAGTAAAGAGAGGGGAGGAGAAACCCTAAGCCGCAGCGACAATGGTGAAGTTTCTCAAACCCAACAAGGCCGTCATAGTCCTCCAAGGCCGATATGCTGGTCGCAAGGCAGTGATCGTCAAGCACTTTGATGATGGAACCAGAGACCGCCCCTATGGTCATTGCTTGGTCGCAGGGATCAAGAAATACCCAAGCAAGGTTATAAAGAAAGACTCGGCCAAGAAAACAGCAAAGAAATCGAGGGTCAAGTGTTTCGTTAAGGTTGTTAACTATCAGCACCTGATGCCTACTAGGTATACTTTGGATGTGGATTTGAAGGACCTTGTTACTCCTGATTGCTTGGCAACTAAGGATAAGAAAGTCGTGGCTTGTAAGGAAACAAAGACAAGGTTCGAGGAGAGGTTCAAGACTGGGAAGAACCGTTGGTTTTTCACCAAGCTGAGGTTTTGAAGGAAGGAAAATGGTGCCGACTCTAAGGTTTTGTTTGGGTTTTAATGTGTTATTTTTAGACATTTTTTAAGTTATTTTTAGACATTTTTTAAGGAGCATTGTTAAGGTTTTGTAGTTTTTTTATGGTGCTAGTTTGAATCTGCTTGGATTTAGTTATTTTTGGAATTATTAATATAAATTGCACTCTTAAAAAA | |||||||||
gi|24071907|gb|BU880383.1|BU880383 UM45TC06 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence GTCGCTGCGGCTTAGGGTTT EST sequence (targeted fragment marked with yellow): GAGGGTTTAGAACAGCCACAGAAAGTAAAGAGAGGGGAGGAGAAACCCTCAGCCGCAGCGACAATGGTGAAGTTTCTCAAGCCCAACAAGGCCGTCATAGTCCTCCAAGGCCGATATGCTGGTCGCAAGGCAGTGATCGTCAAGCACTTTGATGATGGAACCAGAGACCGCCCCTATGGTCATTGCTTGGTCGCAGGGATCAAGAAGTACCCAAGCAAGGTTATAAAGAAAGACTCGGCCAAGAAAACAGCAAAGAAATCGAGGGTCAAGTGTTTCGTTAAGGTTGTTAACTATCAGCACCTGATGCCTACTAGGTATACTTTGGATGTGGATTTGAAGGACCTTGTTACTCCTGATTGCATAGCAACTAAGGATAAGAAAGTCGTGGCTTGTAAGGAAACAAAGACAAGGTTCGAGGAGAGGTTCAAGACTGGGAAGAACCGTTGGTTTTTCACCAAGCTGAGGTTTTGAAGGAAGGAAAATGGTGCCGACTCTAAGGTTTTGTTTGGGT | |||||||||
gi|52505621|gb|CV252646.1|CV252646 PX0015.B21_I05 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_I05 3', mRNA sequence GTCGCTGCGGCTTAGGGTTT EST sequence (targeted fragment marked with yellow): TGATAACCAGTTAGCTGTTTATCAGGTTGACAAGGTGCTTCTTCCTCTTGATATCTTTACACCTAAACCTCCTACTCCAGCACCAGCACCTGAAAAGCCAAAGAAGAGATCCAAAGCTGCAGCGAGTCCAGAATCTCCTGCGGATACTTCTGGGGCAGTAAGCTTTACTGTTCTGAACAATGTTGTGTTCTTTGGAGTTTGCATGGTTGCAGCAATATATTCTTTGTGACACAGAAGGTTTTGATGAGGTTATTGCATGGATTGCTCTCGTTTTTTTAAGTGGGCTATGATTTTGTAGAGTCGGATCGAATCCAATGATTTGTGTGAATAATTGTTGTTATGGTCTCATTGTACCATTCAAGTTTATGCTTAAGATTGAATTTTGAGGGTTTTCTTTTTTTTTCTTTTTTTTCTTTTTTTTCTTTTTTGGGGGGGGGGGGGTTTGCAGTTTTCATGTATGTTGGAATTTTGTAACATTTTTGAAATTCAAGGTTATGTATCAATTGTCTTTTTCTGATCAAAAAAAAAAAAAAAA | |||||||||