| mature miRNA: GTCTCTGTCTGGATCTCCATC species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218801798|gb|FC921843.1|FC921843 C06053A08T7 RindPdigS Citrus sinensis cDNA clone C06053A08, mRNA sequence GTCTCTGTCTGGATCTCCATC EST sequence (targeted fragment marked with yellow): CCTGTCAGTTATGTTGAGAAAGCTGGTGATCCATACAGAGATCAGATGGAAGAGTGTATCTACCTAATCATGCAGAGGTTGAAAGATAGAGGAATCAACAATGATCATACTTTGGCATACCAGAGTCGAGTTGGGCCTGTAAAATGGCTGAAGCCTTACACTGATGAAGTTCTTGTGGAGCTTGGCCAGAAAGGTGTCAAGAGTCTTCTAGCCATTCCAGTCAGTTTTGTGAGCGAGCACATTGAAACTCTTGAAGAGATTGACATGGAG | |||||||||
gi|188338316|gb|EY701479.1|EY701479 CS00-C3-700-106-H01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cD GTCTCTGTCTGGATCTCCATC EST sequence (targeted fragment marked with yellow): ACGCCGTCGCCAGAATATATTTAGGGAAGATGCATATCTATCGAGGCTGCCTGTGTCTATTATAAGGTCCTGGTATCAACGAGAAGGATACGTCAACTCTATGGCTGACTTGATTCAGAAAGAGCTAGGGAAGTTCCAAAAACCTGAGGAGGTTATGATATTCTTCAGTGCCCATGGTGTACCTGTCAGTTATGTGGAGAAAGCTGGTGATCCATACAGAGATCAGATGGAAGAGTGTATCTACCTAGTGATGGCAGAGGTTGAAAGATAGAGGAATCAACAATGATCATACTTTGGCATACCAGAGTCGAGTTGGGCCTGTAAAATGGCTGAAGCCTTACCCTGATGGAAGTTCTTGTGGAGCTTGGCCAGAAAGGTGTCAAGAGTCTTCTAGCCATTCCAGTCAGTTTTGTCAGCCAGCACCTCGCAACTCTTGAGGAGATTGACATGGAGTACCGGCGACTTGGCTCCTTGAATCCGGCCTCGGCACATTGGGGGAGGTGTACCCTGCTCTGAGTGTGCGCCGCTTGCCTTGGTCTCAGATTTGGCCGCCCGCCGCGCTCAGACGCCCGCGCCCCGCCCCGTCAGCGGGGGTGGTGCGCGGTAGGAATTGGGCGCCCGCGGGGGTGGGCGCGAGCCCCGCGCGGGCCTCGCCCCCGCGCGCCTGCTCGGCCCGCCCGCCGATCCCGGGCCCCCGCCCTGCCGGGCGGCCCCGGCGGCGGGCGCGGTCTTCCTGTCCTCGGCCGCCCCCCGCCTCGTGGTCGCCGGGTGTTCCGGGGGGGGCCGCTCCGGCCTCCATTGACCCTTCCCGCCCTGCTACCGCGCGGCATGACAAGCGGTCCGTGCGTTCTGGTTTCGTATCCACCCGGGGCTCTCGGCGGGCCTCCTCCTGTGCGCGGGCCCAGCCG | |||||||||
gi|61690585|gb|DN621485.1|DN621485 UCRCS11_06M11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citru GTCTCTGTCTGGATCTCCATC EST sequence (targeted fragment marked with yellow): CTTCCCAGGCTGTTTCGGTTTCTTCAGTGGCCCTTGGCAAAGTTGATTTCTGTGGTACGGGCTCCCAAAAGTAAAGAAGGATATGCTGCCATAGGAGGTGGCTCACCATTGCGCAAAATAACAGATGAGCAGGCACAAGCACTTAAAACAGCTTTAGAAGCCAAAAACTTGCCCGTAAATGTCTATGTTGGAATGCGTTATTGGTATCCATTTACTGAAGAAGCTGTTCAGCAGATTAAAAGGGACAGAATTACAAGGCTCGTTGTGCTGCCACTTTATCCACAATTCTCTATCTCTACAACGGGGTCAAGCATCCGTGTTCTCCAGAATATATTTAGGGAAGATGCATATCTATCGAGGCTGCCTGTGTCTATTATAAGGTCCTGGTATCAACGAGAAGGATACATCAACTCTATGGCTGACTTGATTCAGAAAGAGCTAGGGAAGTTCCAAAAACCTGAGGAGGTTATGATATTCTTCAGTGCCCATGGTGTACCTGTCAGTTATGTTGAGAAAGCTGGTGATCCATACAGAGATCAGATGGAAGAGTGTATCTACCTAATCATGCAGAGGTTGAAAGATAGAGGAATCAACAATGATCATACTTTGGCATACCAGAGTCGAG | |||||||||
gi|188473814|gb|EY715408.1|EY715408 CS00-C3-702-054-A02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD GTCTCTGTCTGGATCTCCATC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCAAAATCCCGAAAAGAGGAGAAAACCAGAACAAGAAAAACGCATCGAAGCGATGCCTCCAGAAACGCAAACCGAAACGCCTCCGAATTTCTGGGGCGACATGCCGGAAGAGGAGTACTACACGTCTCAGGGAGTGCGAAACGGTAAAAAGTACTTCGAAACGCCCAACGGGAAGCTCTTTACGCAGAGTTTCCTGCCGTTGGATCAAAAGGTGAAGGCCACGGTGTACATGACCCACGGCTATGGATCGGACACCGGCTGGATGTTTCAGAAGATTTGCATCAGCTTTGCTACGTGGGGTTACGCTGTCTTTGCCGCTGATCTTCTCGGGCACGGGCGATCGGACGGCATACGTTGCTATCTAGGTGACATGGAGAAGGTCGCTGCTTCGTCCCTATCATTCTTCAGCATGTGCGCGACAGCGAACCATACAGGGACTTGCCCGGTGTCTTATTTGGCGATTCCATGGGGGGGGCCGCAAGAATGCTGATGGACTTCCAGGCAGAGGCCAAAACGGGGACGGGGCTGATCTTCTCGGGCCCACTCTTGGTAACGGAAAAAAAAGGAAACCAAGAAACTCCCTCCCCTTCTGGAAGGGCGCCAATTGGGAAGGGGGGAAGGGGGGGGGGGGGAGGCCGAAAAAAAAATGGGCCGAAAGAGCCTAAAAACCCCCGGAAAATGGAACCGCCTAGTCACGCGACCCGGAGAGAAATACCGGGGAAGCCCGGGGCGCCCCAACCTAAACAACATGGCCGGATCNGGGCGAGACACGACGGGAACCATTCGCCGCAGGGCCCGGAGCGGCTGTGTAATCCGCTCTCTCTGCGGGGCGGTCAGCGCGGCCGCGGTGACCGCCTATGTCCGCGGCCACCGTGTCCGGGCCGCGCGCTCTCCCGAGTTGCACCGCCGGCCCCG | |||||||||
gi|56530135|gb|CX045844.1|CX045844 UCRCS07_4C12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 C GTCTCTGTCTGGATCTCCATC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAACATTCAGCCATTGATTTACATTCGATGTTGATGTTGATTTTTTAAAATATTCGTCGCTGAAAATACCTTCTTTATGGTACTAGTGGCTACAAGTATACCCTCATGACTCATTATTAAAATGCTAAACAATATAACATGTGTAAACACATACACAACAAAACTAAGTAGGTAGGTAGGTAGGTAGGTAGGGAACACTGCCTCTTGTTATTTGTTCCATGAATTTGAACGGTTGTTTCCTTCTCAGTTCTCAGCGTAAAAAATGGATAAGGATGTATTCAACATAATTTAACTGCCAAAGGAACATGTAAAAACCAAATTGTGAATCAAAATTATCGAGATCAACTTTTCGAGATCGAAGCCACATCATGAGAGCAAGTATGATGTGCCCAATTATAGTGACAAGCTTGCTTATCATCAAAGTTGAAGTTGCCCCAGCAACTACAGCGCCTCCGTAACCCAGTAACATCATATTTACGCAAAGTGGAAGTACTTTTTCTTTGCCCAAAAGGACGCAGAGTGTTTGCATGCCAAATGCTTTGTCTCCTTCAACATCAGGCAAATCCTTGAGAAGTCCGTTTACAAATGCGTAGATGGACATTATAGCGGTTGCAAAGACAAATGGTCCTGTCACTTCGAAAGGTTTACCAAGCAGGTATGTCTGGCTGTGTATGAAGTAAGGTATTTGAAGTATAAGTCCCATAAGAATCACGAGAGTGAATGGAGCCATAAATGTATGTGACTTCCATCTAAGAAAGGGAAGTGGGACGGAATAAGCTGCTCCTGTTAAACCCCACGCGATTACTGCGCAAAGAACAGCTGGAGATCCAGACAGAAATGCCAA | |||||||||
gi|188341550|gb|EY662438.1|EY662438 CS00-C1-101-044-B09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) GTCTCTGTCTGGATCTCCATC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGGAACATAAATTCCACTGACGCTGGAGGAGCAGACAGAGACTCTACATTTGGTGGAGAAATTGGCGTGCGAGAAACGGCATCGTTTCCTCTCCTACGGCCAATCAAAATTTGAATGGGATCAGACCCTAGACGATATATGTATTTACATAAATTTACCGCCTAATGTTCGCTCAAAGCACTTTTATTGCCACATTCACTCTCCACATATTGAACTTGGAATCTAAGGCAGCCCCCCTTATCTCAACCATGAACGTCACCTGTCCGGTGAAGACGGATTCTTCTTTCTGGACCTTAGAAGATGATGCGATGTACATAACATTGACTACCAGGGATTAGGGCCATACTTGTGCTTCAACTATTCTGGGGCACGATCAGCTCGACCCTTATGTCACTGATCACAGATCATAAGCAGCTCATGCTGCATATGCTCCAAAAGAGAATCCGGGTCTTGACCTCGCCCCTGATCATTATCACAGGTAGCTGCCCCAACCCGAGGACCTCTACGAGTGGGATCCGCTCTGATTGACAGTGTCACTACGACTACTCGCTTACTTTGAATAACACTGTAGCATTATGTACCTGTATTAAGCCCACTAGAATCCTGCCGCTCTCTCTGGGAATAAAACGATTCTGATATCGGCATGGTGCAGGATACTATGNTATACTGGAGTGACCTTGTCNAATGATCGTGGG | |||||||||
gi|218800682|gb|FC921759.1|FC921759 C06052A06T7 RindPdigS Citrus sinensis cDNA clone C06052A06, mRNA sequence GTCTCTGTCTGGATCTCCATC EST sequence (targeted fragment marked with yellow): CTTGTCAGTTATGTTGAGAAAGCTGGTGATCCATACAGAGATCAGATGGAGGAGTGTATCTACCTAATCATGCAGAGGTTGAAAGATAGAGGAATCAACAATGATCATACTTTGGCATACCAGAGTCGAGTTGGGCCTGTACAATGGCTGAAGCCTTACACTGATGAAGTTCTTGTGGAGCTTGGCCAGAAAGGTGTCAAGAGTCTTCTAGCCATTCCAGTCAGTTTTGTGAGCGAGCACATTGAAACTCTTGAAGAGATTGACATGGAG | |||||||||