| mature miRNA: GTGAAGTGTTTGGAGGAACTC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|31346916|gb|CD431273.1|CD431273 ETH1_7_D01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_7_D01_A002 5', GTGAAGTGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): AAGTGAGCATTTCCTCTCCCTCTCCGGGGCGGGGCTCATCCATGCACGGGGGCGGGATGGGTGTCTTCTTCCTCTAACCGGCCGGCCTCTTGCCAAGAGAATCATATCGCCGTCCATGCATATATGTGATATCCGTCTCCCAGGGCCGGTGATGTTTACACGAGAGGAGGAATTCTAGCCTGCCTCTTCCTCTGATCGTTGTCAGCAAGATTCTCCGTCCAACCGCCAGAACCAAAATCCCTTTTAAAGCAGGGGAGCTCCCAGCTCCCGAGTTTCCCCAAACACTTCATTTCAGCCTTCAGCTATGGAGGCATCATCGGCATCAGCGGTCGAGTCGACCGCCACCGTGTCCGTCTTCGATGTATCATCCAACAAGCAGCGCCCAGACACGGCGAAGCTCGTGCTGAACAGCCCCAGCCCGCCGAGCCTGCGCGAGGAGCTCGTCGGCGTGGTCGGCAAGGCGTTCCGGCCACGGCCCCCCGGCGGCGGTGGCCGGGCGCCGCGCTGCCCGTGGATCCTCACGGCGCTGCAGTGCGTGTTCCCGGTCCTGCAGTGGAGGAGGACCTACACCCTCAAGTCCTTCAGGAGTGACGTCATGGCCGGCCTCACTCTTGCCAGCCTTGGCATCCCTC | |||||||||
gi|9850614|gb|BE595541.1|BE595541 PI1_56_H08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence GTGAAGTGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): GCACGAGGTGAGCATTTCCTCTCCCTCTCCGGGGCGGGGCTCATCCATGCACGGGGGCGGGATGGGTGTCTTCTTCCTCTAACCGGCCGGCCTCTTGCCAAGAGAATCATATCGCCGTCCATGCATATATGTGATATCCGTCTCCCAGGGCCGGTGATGTTTACACGAGAGGAGGAATTCTAGCCTGCCTCTTCCTCTGATCGTTGTCAGCAAGATTCTCCGTCCAACCGCCAGAACCAAAATCCCTTTTAAAGCAAGGGAGCTCCCAGCTCCCGAGTTTCCCCAAACACTTCATTTCAGCCTTCAGCTATGGAGGCATCATCGGCATCAGCGGTCGAGTCGACCGCCACCGTGTCCGTCTTCGATGTATCATCCAACAAGCAGCGCCCAGACACGGCGAAGCTCGTGCTGAACAGCCCCAGCCCGCCGAGCCTGCGCGAGGAGCTCGTCGGCGTGGTCGGCAAGGCGTTCCGGCCACGGCCCCCCGGCGGCGGTGGCCGGGCGCCGCGCTGCCCGTGGATCCTCACGGCGCTGCAGTGCGTGTTCCCGGTCCTGCAGTGGGGGAGGACCTACA | |||||||||
gi|14366926|gb|BG948737.1|BG948737 LG1_330_D08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence GTGAAGTGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): CGCCACCGGCCGAGCCGAATCGAGCAGCAGCAGCAGCAGCAGCGCCCTCCCACCTTGCCATGGCGACGCAGGCTGCTTTCCTCGCGGGGTTATCGCAGCTCGCCGCACAGCCGGGCCGGGACCGCGCCGTGGCGCCGGCGCGGGTGGCCGTGGCGGCGGTGGGTGTGGGTAGCGCCAAGGTGGGTGTGCGGGTGGGCGTGAAGGCGGGGACCGCCGAGGCCAAAGCGGTGGCGCAGCGCCGCGGGGTGCGGTGCCGGGCCAGCCTGATCGAGCCCGACGGCGGGCGGCTGGTGGACCTGGTGGCGCCCGAGGAGGGCGGGCGGCGCGCGGCGCTGCGGCGGGAGGCGGCCGAGCTGCCGCACCGCCTGCGCCTCAGCCGCGTCGACAAGGAATGGGTCCACGTCCTCAGCGAAGGGTGGGCGAGCCCGCTGCAAGGGTTCATGCGCGAGCATGAGTTCCTCCAAGCACTTCATTTCAATGCCATCCGCGGCGCGGATGGCAGGATGGTCAACATGTCCGTCCCCATCGTGCTCTCCCTTGGGGACGC | |||||||||
gi|57810088|gb|CX611368.1|CX611368 ANR1_24_F08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_24_F08_A002 3', mRNA sequ GTGAAGTGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): GCATCTGAAGTGCTAATCCAATGCTGAAGTGGTGAAAGAAAGAATTTAGAACATCTGGACAACACATGTTTGGGTTCCAGTGTCCAATTAGTCAGAAAATGGAGTCGCTCTACACCTAGCAGTCTAGGGCAGTGGCTATTGTACATAGTTACATATTGGGAGCAATGCAACCCTGTCCGGGGACACAAAAAAAAAGAAGAAATACATTCATGAGCAATCAGAGAAACAAAACATGAAACGCCTCCAGCCATCCAATATTTACAATCACTTGCGGAGTCCAGGATCAAGTGTCTTGATACTCTGGTCTATATGCCGGATAATGCAAACAGAAACAGCAGCAAATAGCTTGCGGCTCTCGCACCACAACCGCAGACTTCTTCCAAATGCTTCAACAATTGGTGGGCAGGCAGGCAGACGGGTTGGAAACAATCAGATCACTGCAAAAACATTATCTGGAAAGGAGTGATTGTCCCTGGCGCTTGGTCAGTAACAACATGTAAGCCTTCCTCAACAGCACGTTTACAGAATTGCAGGAGGTCCGGCCATCTGGTCCTCTCTTTTTTTTCCCTGGGTATGGTAGACTAGCTTCATGGCTCTTGCTTCGTATGATGAGAAATGCTTGCCGTACCATATGATGCAACCAGTCTGTTCAGTTGAATAAGTGAATTTATATGGTCTTCATTTATGGATAAAGGCAATGGAGGCATCTGACCCATGATACCAGGCGTTTCACTCATTCTGCTTAAAATTGTTTTG | |||||||||