| mature miRNA: GTGAAGTGTTTGGGGGAACTC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|14366926|gb|BG948737.1|BG948737 LG1_330_D08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence GTGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CGCCACCGGCCGAGCCGAATCGAGCAGCAGCAGCAGCAGCAGCGCCCTCCCACCTTGCCATGGCGACGCAGGCTGCTTTCCTCGCGGGGTTATCGCAGCTCGCCGCACAGCCGGGCCGGGACCGCGCCGTGGCGCCGGCGCGGGTGGCCGTGGCGGCGGTGGGTGTGGGTAGCGCCAAGGTGGGTGTGCGGGTGGGCGTGAAGGCGGGGACCGCCGAGGCCAAAGCGGTGGCGCAGCGCCGCGGGGTGCGGTGCCGGGCCAGCCTGATCGAGCCCGACGGCGGGCGGCTGGTGGACCTGGTGGCGCCCGAGGAGGGCGGGCGGCGCGCGGCGCTGCGGCGGGAGGCGGCCGAGCTGCCGCACCGCCTGCGCCTCAGCCGCGTCGACAAGGAATGGGTCCACGTCCTCAGCGAAGGGTGGGCGAGCCCGCTGCAAGGGTTCATGCGCGAGCATGAGTTCCTCCAAGCACTTCATTTCAATGCCATCCGCGGCGCGGATGGCAGGATGGTCAACATGTCCGTCCCCATCGTGCTCTCCCTTGGGGACGC | |||||||||
gi|31346916|gb|CD431273.1|CD431273 ETH1_7_D01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_7_D01_A002 5', GTGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): AAGTGAGCATTTCCTCTCCCTCTCCGGGGCGGGGCTCATCCATGCACGGGGGCGGGATGGGTGTCTTCTTCCTCTAACCGGCCGGCCTCTTGCCAAGAGAATCATATCGCCGTCCATGCATATATGTGATATCCGTCTCCCAGGGCCGGTGATGTTTACACGAGAGGAGGAATTCTAGCCTGCCTCTTCCTCTGATCGTTGTCAGCAAGATTCTCCGTCCAACCGCCAGAACCAAAATCCCTTTTAAAGCAGGGGAGCTCCCAGCTCCCGAGTTTCCCCAAACACTTCATTTCAGCCTTCAGCTATGGAGGCATCATCGGCATCAGCGGTCGAGTCGACCGCCACCGTGTCCGTCTTCGATGTATCATCCAACAAGCAGCGCCCAGACACGGCGAAGCTCGTGCTGAACAGCCCCAGCCCGCCGAGCCTGCGCGAGGAGCTCGTCGGCGTGGTCGGCAAGGCGTTCCGGCCACGGCCCCCCGGCGGCGGTGGCCGGGCGCCGCGCTGCCCGTGGATCCTCACGGCGCTGCAGTGCGTGTTCCCGGTCCTGCAGTGGAGGAGGACCTACACCCTCAAGTCCTTCAGGAGTGACGTCATGGCCGGCCTCACTCTTGCCAGCCTTGGCATCCCTC | |||||||||
gi|30976902|gb|CD233437.1|CD233437 SS1_2_B03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_2_B03_A012 3', mRNA GTGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CAACAAAATCTCTCATTCTGATTCTTTCATCAGTTCATACCCCCTTTTAATTGATTGTTCTGTTCCCCCAAACAATTCATATTTGGAAAACAAGGAATTTTTTTTGAGGGCAAAAAAAAAAACCCAAATCATTCCCCCCCCAGGGGAAAAGGGGACTGTGGCAAATGCAACCAACAAAAAATTACTTGCCCCAAAATCAACAATTGAGCGAGCAAATTATTGAGGCAGTGTTGCAATGATGTGCCCCTCTTTGCTGGCATTCAGCATTACATAAACTCTTACAAAAAACAAAATTGTGAAGGAAGGCAGG | |||||||||
gi|9299360|gb|BE357803.1|BE357803 DG1_22_B12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence GTGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CAGCTCCTGGTAGATATGTTCCGAAGTTTAAACTCGGCAGCGATAGCGGCGGCAGCTCTGGAGGCAGCCAGAGACCAGATGTGCGCTCCCGTGATGAAGACCGCTGGGGTCCACCCGGTGGCAGCCAGAGACCAACAGATGCGCGCCCACGAGATGAAGACCGCTGGGGTCCACCTGGTGGGAGCCGGAGACCATCAGATGTGCGCCCACGCGATGAAGATCGCTGGGGTTCACGTGGAGAGCGCTCACGCCTTGATGAGCGTTCACTCAGGCAAGATGGCCCTCCTGCACGACAGGATGCACCTCCACCCCGCCAAGATGGCCCTCCTCCAGCTACTGACCGCTGGCGCGGTGGACCAAGATTTTCCTCAAACTCTTCATCAACCTGGTCCAACAGGCCACGGAACTGATGCCATGCCCCTGAGATGTTTTGCCATAAATGTCATTGTGGAGACATCCGTGCACAATGTCTGCTAGTGATCTCGGCTAGAATGGTCACTTGAAATTTGTTTTCTGTTTTGCCGACTGCACCCAAATTTTTGGAGCTTGTCTTTTTGGCTATGGCACCTTTCCGGTCAATGTTTTGACGTTCCAAGTTGCTATACTCCATGGATATTTGTGTCGCTGTTTGTCAGTAATACTT | |||||||||
gi|33110677|gb|CF074018.1|CF074018 FE1_9_D07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_9_D07_A002 5', mRNA GTGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): ATTCTCCATTTCCCCACTCGCTCCCTCTCTCCCGCTCGTCAGTGGGAGTGTGCGTGCGGGGCTAGCGCCGCTAGGGTTTCTTCCGCGAGCCCACCATCGCCGGCCGGCCGCGGGCGATCTGGGTCTCGATCCGGCGCCCGCCCTAACTCGGGTTCGCGGGGCGCAAGGCCAAGGGCGCGAGGACATGAAGTCGTCGCTGCGGAAGCTGCGGGGCTTCGCGCTGCAGCGCCACGAGCAGCGGGTGGACCGGGACCGCGGTGGCCGGGGCCACTCCACCGCCGCCGCCGCCACGGCGGCGGACGAGCTCCTCGCGGCTGCCCAGGATATGGCTGATATGAGGAGCTGTTATGATAACTTGCTTTCTGTTGCTGCAGCAATTGCAAATAGTGCATATGAGTTCTCTGAAGCACTTCAAGAAATGGGAACTTGTTTGCTTAAAAGAGTTACGCCAAATAAGGATGGAATAAATGATAAAGTTTTGCTGTTGCTTGGGAAATCACAATTTGAACTTCGGAAACTTGTAGATAGTTATCGTGTGCATGTTCTTAATACCATCACCACTCCATCGCTGTCGCTTCTTAATGAGCTTCAAACTGTGGAGGAAATGAAGCGCCAATGTGATGAAAAAAGAGAATTGTACGAATTCATGCTAAATGCGCAGAAAGAAAAGGGGAGGTCTAAGAATGCTAAAGGTGATAATGGAGCATCAGAGCAATTGAAACAAGCTCA | |||||||||
gi|9850614|gb|BE595541.1|BE595541 PI1_56_H08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence GTGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GCACGAGGTGAGCATTTCCTCTCCCTCTCCGGGGCGGGGCTCATCCATGCACGGGGGCGGGATGGGTGTCTTCTTCCTCTAACCGGCCGGCCTCTTGCCAAGAGAATCATATCGCCGTCCATGCATATATGTGATATCCGTCTCCCAGGGCCGGTGATGTTTACACGAGAGGAGGAATTCTAGCCTGCCTCTTCCTCTGATCGTTGTCAGCAAGATTCTCCGTCCAACCGCCAGAACCAAAATCCCTTTTAAAGCAAGGGAGCTCCCAGCTCCCGAGTTTCCCCAAACACTTCATTTCAGCCTTCAGCTATGGAGGCATCATCGGCATCAGCGGTCGAGTCGACCGCCACCGTGTCCGTCTTCGATGTATCATCCAACAAGCAGCGCCCAGACACGGCGAAGCTCGTGCTGAACAGCCCCAGCCCGCCGAGCCTGCGCGAGGAGCTCGTCGGCGTGGTCGGCAAGGCGTTCCGGCCACGGCCCCCCGGCGGCGGTGGCCGGGCGCCGCGCTGCCCGTGGATCCTCACGGCGCTGCAGTGCGTGTTCCCGGTCCTGCAGTGGGGGAGGACCTACA | |||||||||