| mature miRNA: GTGACAGAAGAGAGTGAGCAC species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90505736|gb|DY967594.1|DY967594 CLSM18696.b1_O18.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM18696, mRNA sequen GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGGCTTTTGCCTATCAACTTTCTTTCTCCATAGACATGCAACTAGCCAAACTAGCACGCAAACTTTGATTTGCCAATTGGGGGATCCTCTGATTGAAACGTGTAAGAGAGTTTCAGACTGCTGACCACGACACACTCTCTCTTCTTCACTCTCTCCTCCCCTGTTGACTCTCTTCTCTCACTGAACACACACTGCTTTGTACTTCTTTGTTTCGATTGAAGTA | |||||||||
gi|90503826|gb|DY965684.1|DY965684 CLSM16903.b1_M01.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM16903, mRNA sequen GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TCGGCGGGAACGTGTAGAGAGTTTCAGACTGCTGACCCGACACACTCTCTCTTCTTCACTCTCTCCTCCCCTGCTGACTCTCTTCTCTCACTGAACACACACTGCTTGTTACTTCTTTGTTTCGATTGAAGTACATTCACGAGAATCGGGTCATTTGTTCGTATGAAGTACAGCTTGATTTGGGCTTGATTGGGAGAAGAGAAATATGAAGTCTTTGATTATTGGGTCTTTTACTAGTAACGTTTCCGTTCATTCTCCGCCATTACCAAATTCACCTTCTGTATTCGTATCAGCAGGTTCTCTTCATGTATCATTAAGATCATCGAAGGGTAACAGAGTCATTAGATGCGAATCAAGTCTTGTGAGACACAATCTCAGCAGTTTTAATGAAAGTTTTCTATTTTCAAGAAAACGCAACACAAATCATGTTGCAAATGCAGTTTCTGAACAACCTATTGAACCTGAATCTTCAAGCCCTCAAAAACTCCTTCCAAATGCTTTTGATGCTTTCTACAGATTCTCAAGACCTCACACAGTTATAGGAACTGCTTTGAGCATACTTTCAGTTTCACTCCTTGCAATTCAGAAGCTTTCAGATTTTTCTCCTCTATTCTTCATTGGTGTCTTTGAGGCGATTGTTGCTGCATTCTTTATGAATATATATATATTGTTGGCTTGAATCAGCTATCTGATATAGAAATAGACAAGGTTAACAAGCCATATCTTCCGTTAGCATCTGGAGAATATTCTGTTAAAACTGGTGTTATCATTGTATCCTCATTTGCATTCATGAGTTTTACTCTTGGATGGATTGTTGGTTCATGGCCTTTATTTTGGGCACTTTTCATAAGTTTTCTTCTTGGAACTGCATATTCAATCAATATGCCAATGTTGAGATGGA | |||||||||
gi|22259023|gb|BQ872464.1|BQ872464 QGI15A03.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI15A03, mRNA sequence GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): AACCCTCAACCATATCTTTTTCCGGTAAATCATCATGGCACCCGTGTGGTACAGCCCAGTGGTCCACCGGTGCACACAGCCATGGCTTCCATGACCACAANCTCTGTGTGGAGCCACTTGGACCATGCTCCCTCTCTTCTGTCATCTTCAGAGGCATCTTTTATCCATGTGGTGCACCCTCCATCCTGGTTCCTTCTCTGCAACAATAANTTTGGAAAATGATTCTGATGCGGGGTGGGGGGGTATG | |||||||||
gi|90517436|gb|DY979294.1|DY979294 CLSS1298.b1_D13.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS1298, mRNA sequence GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGGGGATAGAATCAGCTTCGCCCTCCTTAGCAAAATGAGGGGAATCTTCGCTATCCGTCGTATGGTACGTAATGGAGTTTATTGCGGCTCTATCTGCTCTTCCATTGGTGAAATTGCATCAGTTTCCTCTTCAAATCCAGCAACAATTCCATACTCGTACTCGTGTTCCTTCTCTTCTGTGACGAAACCATCATGGTCAATTCCCATCTCCAAATTTCAATCGGGGCAGCAGCCTTCTAATCGGAATCACTGTTCCTCTCCCTCGTCGGCAGGTGGATCTAGAGTGGTAACAGTCGAGTCAGAAGCTGAATTTAACACCTTACTTCGCAAGATTCAAGATGAATCCTTGCCAGCAGTCTTTTACTTCACTGCTGTCTGGTGTGGGCCATGTAGGTTTGTATCTCCTCTTATTGGGGAGTTGAGTGAGAAATACACTAATGTCACCACTTATAAGATTGATATCGATCAAGAAGGTATGGGGGATGCATTGGCAAAGCTAAATATTTCTGCTGTGCCAACTCTCCACTTTTTTCAAGGAGGAAAGAAGGTGTCCGAAATTGTTGGGGCCGATGTGAAGCTCCTTAAAACCACCATGGAGGATCTCTACAAGTGAGCTTGTATGCTCACTAGCCACTTTTTATTGAATACATGTTAAATGTTTAGATTTTTAGTATTATCTTAATTTAAGCATGCAATATGTATGATCCGACTATATATAAAGGGTTTTGGGTTTATGAAAAATACATATAGAGGATTGGAA | |||||||||
gi|90512068|gb|DY973926.1|DY973926 CLSM7596.b1_H04.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM7596, mRNA sequence GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GACTGCTGACCACGACACACTCTCTCTTCTTCACTCTCTCCTCCCCTGTTGACTCTCTTCTCTCACTGAACACACACTGCTTGTTACTTCTTTGTTTCGATTGAAGTACATTCACGAGAATCGGGTCATTTGTTCGTATGAAGTACAGCTTGATTTGGGCTTGATTGGGAGAAGAGAAATATGAAGTCTTTGATTATTGGGTCTTTTACTAGTAACGTTTCCGTTCATTCTCCGCCATTACCAAATTCACCTTCTGTATTCGTATCAGCAGGTTCTCTTCATGTATCATTAAGATCATCGAAGGGTAACAGAGTCATTAGATGCGAATCAAGTCTTGTGAGACACAATCTCAGCAGTTTTAATGAAAGTTTTCTATTTTCAAGAAAACGCAACACAAATCATGTTGCAAATGCAGTTTCTGAACAACCTATTGAACCTGAATCTTCAAGCCCTCAAAAACTCCTTCCAAATGCTTTTGATGCTTTCTACAGATTCTCAAGACCTCACACAGTTATAGGAACTGCTTTGAGCATACTTTCAGTTTCACTCCTTGCAATTCAGAAGCTTTCAGATTTTTCTCCTCTATTCTTCATTGGTGTCTTTGAGGCGATTGTTGCTGCATTCTTTATGAATATATATATTGTTGGCTTGAATCAGCTATCTGATATAGAAATAGACAAGGTTAACAAGCCATATCTTCCGTTAGCATCTGGAGAATATTCTGTTAAAACTGGTGTTATCATTGTATCCTCATTTGCATTCATGAGTTTTACTCTTGGA | |||||||||
gi|90513992|gb|DY975850.1|DY975850 CLSM9562.b1_D16.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM9562, mRNA sequence GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TATATATTATAGTATTAAAAAGGTCTGAGTTTTGACTGATGAAGTAATTTTATTCATGTTTGAAGCTATTGTAGCTACTAATATAAAGTTTGTGGGAAGCAATCTATTCATCATTCAGGGCTTTCTCTTCCTCTGCTCTCACCTCTCTTGGCTTCTCTTTAGCAAAGATTTCAGCTTCACCATTCATATCAGTTCGGGGGTGAGGGGTGAAGGTTGCAACTTGAAGGTGTTATTTCACCAATGATGGAGTTTTCGTCATCATCAAAACGGGCTAAAACTCCGGCTGCCAGCAATAATATTAGTGTTTCGTGTTTAGTCGACGGGTGCAACGCTGACCTTGGTCAATGCCGGGAGTACCACCGCCGGCACAAAGTATGTGAACTCCACTCCAAGTCTCCGAAGGTCACAATTGCAGGGAGGGAACAGCGCTTCTGTCAGCAGTGCAGCAGGTTTCACTCATTGGCAGAGTTTGACGAAGGAAAACGAAGCTGCCGGAAACGTCTTGATGGTCATAACCGGCGACGCCGGAAGCCTCAATCAGATTCCATATCCAAAACAACGGCAACTTTCCTTTCAAGCCAACCAGGGATGTCTAGAATATTGTCATTCAACAGCACACAAATACACTTAAGTTCTGTAGTGGGCTCCGCTAGGACGACAGGAATCAGACCGGATAACCACACAATCGGACCATTCAACAACCAACCGCCGTTAAACTACCTTACCAGATCACTACCAACTCCATCTCCACACAACGGTGTCGGTGGAGACAACCACTTCAACTTTTTCCACACCGTTCACTGCCGCTACCAGTTTCTTCAGGTCAACTAAATAGAGGCGCCGGCCACTCTCGTGCTCTCTCTCTTCTGTCATCATCACCGCCAGCCCATCAAACTCCGGCAATCATGC | |||||||||
gi|90505091|gb|DY966949.1|DY966949 CLSM18089.b1_A11.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM18089, mRNA sequen GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CAAAGAGGGCAGCATCACCTACCACCCAAAGACTATGGAGATGGGTGGTTCGAGTGGTTCTTCGGAGTCGCAACTGCTCAAAATTGGTTTGCAATTCGGGAAAGAAATCTATTTTGAGGATGTGGGAGTTGGAGCTCAGGTTAAATCCGATGATGGGTTGTCTCCGGCGAGCGGCGGCGATGCTGCTGGAGGGCCGCAGAAGAAAGGGAGAACTGCTGGTGGGGTGGTGAGTGGTTTTGGACAACAGCAACCACCGAGGTGTCAGGTGGAAGGTTGTAATCTGGATCTGAGTGATGCTAAAAGTTACTATTCAAGGCACAAAGTTTGTGGTGCTCATTCGAAAACGGCTAAGGTCATTGTTAATGGCCTTGAACAGAGATTCTGCCAACAGTGCAGCAGGTTCCATCAACTACCAGAGTTTGACCAGGGAAAAAGAAGCTGCAGGAGACGATTGGCTGGGCACAATGAACGTAGAAGAAAGCCATCTCTGCTATCCACTCGCTATGGAACTGTCTCCTCCTCAATCTTTGAAAACAATGGGAATTCTGGAGGCTTTCTAATGGACTTTTCGTCATGCTCAAGAGGAAGGATTCAGTGGCCAGGAACAAGGGCGGCACCACCGCCTCGAGCCGCCATCGACCTCCCAATTGCCGGAGAAAAGTTCCCACCGCTTCCATGGCAAAGCAACCTGGATAATCCACCTCCTTATGTTCCACCAGGAGGGTGTTTTAATGGAGTCCATGAGGACTCCAACTGTGCTCTCTCTCTTCTGTCAAATCACTCATCTGGCTCAAGGAACCAATCCCTGAGCCATGAGTACTATATCAACCCTGAAGCTGGTGCATATGTGCACCAGCTTCATCAACCAACAACCGGAACCGGAGCTGGGTTCGGAACCATGGTTGAGGTTCACTACTCAAC | |||||||||
gi|22261423|gb|BQ874863.1|BQ874863 QGI6H22.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI6H22, mRNA sequence GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GTGGTGAGTGGTTTTGGACAACAGCAACCACCGAAGTGTCAGGTGGAAGGTTGTAATCTGGATCTGAGTGATGCTAAAAGTTACTATTCAAGGCACAAAGTTTGTGGTGCTCATTCGAAAACGGCTAAGGTCATTGTTAATGGCCTTGAACAGAGATTCTGCCAACAGTGCAGCAGGTTCCATCAACTACCAGAGTTTGACCAGGGAAAAAGAAGCTGCAGGAGACGATTGGCTGGGCACAATGAACGTAGAAGAAAGCCATCTCTGCTATCCACTCGCTATGGAACTGTCTCCTCCTCAATCTTTGAAAACAATGGGAATTCTGGAGGCTTTCTAATGGACTTTTCGTCATGCTCAAGAGGAAGGATTCAGTGGCCAGGAACAAGGGCGGCACCACCGCCTCGAGCCGCCATCGACCTCCCAATTGCCGGAGAAAAGTTCCCACCGCTTCCATGGCAAAGCAACCTGGATAATCCACCTCCTTATGTTCCACCAGGAGGGTGTTTTAATGGAGTCCGTGAGGACTCCAACTGTGCTCTCTCTCTTCTGTCAAATCACTCATCTAGCTCAAGGAACCAATCCCTGAGCCATGAGTACTATATCACCCCTGAAGCTGGTGCATATGTGCACCAGCTTCATCAACCAACAACCGGA | |||||||||
gi|22246817|gb|BQ861352.1|BQ861352 QGC18E14.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC18E14, mRNA sequence GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): AGCAGAAATGGTCTCTCAAGGGCATGACTGCTCTTGTCACAGGTGGCACCAGAGGCATAGGTTATTCAATTGTGGAGGAATTAGCAGGATTCGGTGCATCTATACATACGTGTTCAAGAAATCAAAAAGAGATCAATGAAAGGCTGGAAGAATGGAAAGGCAAAGGGTATGTTGTTACTGCTTCGGTCTGTGATTTGTCTTTTAAAGAACAAAGGGAGGAACTCATGAACACCGTTTCTTCCATTTTTGATGCCAAACTCAACATCCTTATAAACAATGCTGCAATATCCCGACTTAGAGATGCAACAGAATATACAACCGAGGATTGTTCATATATAATGGGGACAAACTTTGAATCTCCTTTCCATTTGACTCAACTCGCACACCCATTGCTCAAGTCATCAGGAAATGCAAGCATCGTGTTCATCTCTTCTGTTGCTGGTGTCACGGGTCTTCCTTCCATATCTGTATATGCAGCTGCTAAAGGTGCAATCAATCAATTGACCAAGAACTTGGCTTGTGAGTGGGCTAAAGACAATATTCGCACCAATGCTGTTGCACCATGGGGTGTCAGAACCACCATTATGAACTTCGAGAAGGTGGATGACAAAATTATTGAAGCATATGCCCCATTAATGGCTCGCACTCCAGGCCGTCCAATAGCAGAACCTGATGAAATATCACCTTTGGTGGCATTCCTTTGCCTC | |||||||||
gi|22232000|gb|BQ847567.1|BQ847567 QGA3h03.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGA3h03, mRNA sequence GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GATATATGGAAACAACAAAATCTGGAAGGGTAGTCAGAAGCATGAACGATATGTTGAAAAATGAGATGATTGAATATGGGGAAGAAGAAGAAGAAGAAGGAGGAGAAGAAGAAGATGATGATGAGAACTTCGGAGAGGGTAGTAGGAAGAAGAAGGTAATGAGAAGGAGGGGTTCTGGTAGCGGAGGAGGTTCCGTACAACCTTGTTGTCAGGTGGAAGGTTGCACTGCTGATATGAGTAACTGCAAGACATACCACCGGCGGCATAAAGTCTGTGAGCTTCATTCCAAGGCTCCAGTTGTTATAACTGGTGGATATCAACAGCGGTTTTGTCAGCAATGCAGCAGGTTCCATGACCTAATAGAATTTGATAATGCCAAGAGAAGTTGTCGTAGGCGTTTAGCTGGGCATAATGAGCGCCGACGTAAAAGCTCCTTTGAAACTTATGGAGACGGTTCCTGATCATTTAAGGAAAAGCGGATTGTTAGTCCCTCATCAACTCCTAATAAAATAAGACTTATATAACTATATTGATGGCTATGATGCTCTCTCTCTTCTGTCATTCTGTAAACTNTATTATCAAGAAGTGTTGTAGTATAAGTAAATATATATGAGGAATTCANTAGGTAATTAGTAAATGAATTGTGATGTTGTACTAGCAAATCATACGCTATTTATGAT | |||||||||
gi|22264923|gb|BQ875702.1|BQ875702 QGI8N20.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI8N20, mRNA sequence GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGGCCTTATGGCCGCTTGACGGGTGCACGGCGGACCTTAGAAACTGCAGAAAGTATCACCAGCGTCATAAGGTTTGCGAAGTCCATTCCAAGAGCCCAGAGGTTTCAATCAAAACCGAAAAGCTTCGATTCTGCCAGCAGTGTAGTCGGTTCCATCCGCTAGATGAATTTGACGAAGGAAAACGGAGTTGCAGAAAGCGACTTGACGGGCATAATCGGAGAAGAAGAAAGCCTCGACCATATCTTTTTCCGGCGAATCATCATGGCACCGGTGTGGCACAGCCGAGTGGTCCACCGGTGCACACAGCCATGGCTTCCATGACCACGAGCTCTGTGTGGAGCCACTTGGACCATGCTCCCTCTCTTCTGTCATCTTCAGAGGCATCTTTTAGCCATGTGGTGCACCCTCCATCTGGTTCCTTCTCTGCAACAATAAGTTTGGAGAATGATTCTGATGCGGGGTGGGGTGGTATGATTGATACGACGTCGAATTATAATCAAGATCCTCAAGAGTTTCCTTTCTATTGGCGATATAAGTAATTGTTGGTTTTTGTTGCACAAGGTTTATGTTTGTACTTTAAGTTATTTAATAGTAAGTAAGTAGGTTTTAGATTTGTTCCGTACATGTAATTTCCTAGGATTTTAAGTTGTTAAAACAAGAATTTAAGCAATATTTTTTTGTTTTTGCT | |||||||||
gi|83979334|gb|DW125443.1|DW125443 CLSX1939.b1_E05.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX1939, mRNA sequence GTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GCGGGGATCCAAAAATAAAAAAATGGAGAGAAAGAGTAATAAAGTTTCCTCTAGAGAAAAGTTGAACATGACAAAGAACGACTTAGTGAATGACAATTATGATCATGAGCTTATGGGCGGCAGCTACGGCGGCGATGGCGAAGATGGTGGTGGTTCTTCCAATGGGGATGTAAAGAAGAAGAAGGGGTGTCAGAATAGTGGTGGTTTGAACAGTGTCACAAGATGTTGTCAAGCTGAAAAATGTACAAGTGATTTAGCTGAAGCCAAACAATATCATCGAAGGCATAGAGTATGTGAGTTTCATGCAAAGGCTCATGCTGCTATTATTGCTGGAATCCACCAAAGATTCTGTCAACAATGTAGCCGGTTTCATGAGCTTTCGGAATTCGATGAAGCCAAAAGAAGTTGTAGGAGGCGTTTAGCAGGGCACAATGAAAGGCGAAGGAAGAACTCAATGGAGTTCAAAGGCACTGGGAAGGAACTTGTTTGTGTGCAAAGTGATGATAGGAGGTTTCAAATGGTTATACAAGAAAACCAGACTTATAATAATAATAAACATTTGCAAACAAGATGAAAAACCAAAATAAATCAAGGCACGAAGTATGCTCTCTCTCTTCTGTCACTACTTATAATTGTACTAATTCAACAACAGTGTGTGGTGTGTGTGCACCACACACACTATTGTCGAATGCTAAAAAAAGTTGCTTATAACCCCATGAGTTTGAATCTCAAAAAATGTCAGTTTCTCTAGTATTATTATTATTATGTATAACAATTGGTGTAGTTTT | |||||||||