| mature miRNA: GTGCTCTTTATGCTTCTGTCA species: Gossypium raimondii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|48879116|gb|CO130138.1|CO130138 GR__Eb31L21.r GR__Eb Gossypium raimondii cDNA clone GR__Eb31L21 3', mRNA sequence GTGCTCTTTATGCTTCTGTCA EST sequence (targeted fragment marked with yellow): GCCATGATCTTGGAACGTGGTACCATCTTNGGGTTGGCTGGTCACAACCACTCTGGCACTTTGTAGTTCGGAATGTCCCCAAGTAACTACAAGTACCGCAGTTACCCTTTGCATAAGCCATCCAATATCTTCCTAAGCTTTGTCCATTAATCCATACTTGACCCTTTCCCATACTCCGCATATCCAAAGCCAATGGTTCATTACCTCCTGGGGCATTGAAATACGTCTTATACCATGTCATAGACTGCCGGCTCCGTGCAGCTAGTGAACCTCGAATCCATTCACCTCGAATCCATTCAACAGACGAGGCTCCATGGGGAGAGACCAAATTCATTGCTTCTCCTCTTAAGCCAACCTGGTATGACCATTTCTGCCACGTCAAATCCTTCTTTCCTTGGTTAAGGCCATGCAACAATACACTTTGGATTCCAGTTTTCCATGTCTCGAAATGCAGTCCATCATTCGGCAATCCAACAGCTACGCTGAGGAGTGCAATGTGATTTGTTCCAGCATGTAGGTTCACTGGTCCTGTATATGTGAATCTCCTGTTTTCCCTAGTTCCATATGCTGACCCTGAAAACTGTCCGTTGACAAAAACATGAAGAGCATGGCCAGCTGAATCCACATTGAGAGTGGGTTTTTGTCCTCCTCGCAGAAACGATTCTGATGGACTAATGTCAACACTGGTTGTGTACCACAGGTAGTCACTATTATCTCTGGTAACATTCATTTGCTCCAAGAGTCCAGGAGCTGTGATTCTTGAACTTGCTCCTAGAGAAGAAATGTCTTCATCATAAGCCTCCCATGGGAACATCTAAGTGTTTGCTGGCAGCATTGAATCCGTGAGATCCCG | |||||||||
gi|48880226|gb|CO131248.1|CO131248 GR__Eb43H05.f GR__Eb Gossypium raimondii cDNA clone GR__Eb43H05 5', mRNA sequence GTGCTCTTTATGCTTCTGTCA EST sequence (targeted fragment marked with yellow): ACAGTTCCAAATGTCTCAAATTTCACTAGGAAGAACATACAAAATTGTGACGACCTTCTGGCAGCAACACAAAGAAATGATGAAAACTGTAACTGGAACAAGCATAAACAGCACCATTTTTAAAAGTTTGAAATTACCAGTCAAAGCCGCTACCAGCACCAAACTATCTCAGATGGCTGCCACATGCAGCAACTATCAGCAGCTCTTATCTCAGTCACATTAAGTTATTCAATCAACCATGAGCAACTATCAGGAGCTCTTATCTCTTCGCTGCTTGCGGACCTTCACAAATTTTCTGGCAGACTTGTCACTGCCACCGGTGCCCAATGAGAAGCTCCCTCCAGCACCAAATTCAACACTACCAGAAGCCAGAAATGGAGATGGATTCTGTGGTGCGCCAATGCTTGTTTGGCCTCCAAACTGGACAGAACCTACTCCTGATGGGTTTGATGCACCAAAAACAAACCCAGAAGCAGGTGATGAGATTGGCTGTTGACTAAATGTCACAACAGTCGGTGAAGCCTGAACTGTGTCCTCTGCCATACTATCTTCCATTTGATCATTATTACTAGAGGGTGTTGACCCAAACACCAAGCCAGGACTAGTGTTACCAAACACAGGCTGTGATGGAGTAGCAGCTGCAGCCGAAGTGAATGAAAATATGGAACTTGA | |||||||||
gi|48746369|gb|CO076888.1|CO076888 GR__Ea38G22.r GR__Ea Gossypium raimondii cDNA clone GR__Ea38G22 3', mRNA sequence GTGCTCTTTATGCTTCTGTCA EST sequence (targeted fragment marked with yellow): TCATGAACTATCCATTACCAATTACAACTAAACCAAGTTGGATTTCTCAAGTCCCTGTTAAAACAATGAAATATTGATACCAAATCAAGACATATAAATATAAGTAAATATTTGTTGGCTTCGTAGTAGTTTACATGAAAAAAAAAGTTTGATAACCTTATTAAAGGTACTTTAAAGAATCTAGAATAATTATAGATATGTAAAACAACATAAAATCAAATCATCAATTACCACAAAAGAGCTTACCCTCAAACAATTTCAACCAAGTTTTGAAAGCCTAATGAACAAAAGCCTCCCTCCCTACCGAAGGAAATTATGATTCGAATTCAGGATATTCCTAGGAAAGGTGAACACCTTGCCAATATGCCACAACTTAGGGTTACTGCTCTAACTATATAGACACTAGTTTTCCTCATAAATGACACAACAGAGATGAAATTAAGAAGTGAGTTAGGAAAATTAGAGGTTGTGTTTAGCCTTTAGTGATGAACATAGCAAGAGAAAATTTATAATGAGTAAAGAATGAATGTTAGAAGTAAAAGGAAGAAAATAGGGTGAGAAGAAAAGGTAAGAGTGGCTTGAAGGTGATGACAGAAGCATAAAGAGCACAAAGGAGTGGGATGCATTGCTTCAAGACTCCTAATTGCACACCATCATCTGTGCTCTCTATCTTCTGTCAACAACAATCACCAATTGCCTCCTCGCTTTCCTCCCCGGCCCTTAGAGTCCCTACACCTACGCACTATTGTTTTAGTTAAAAATTCATTAGACCATAGGAAAGGAAGAAAAGGTTACTTTAAAAGGAAAGGTTGGCCTTAGGAGATGAAAAGTATAACTATTTAAGAAAG | |||||||||
gi|48880206|gb|CO131228.1|CO131228 GR__Eb43G19.f GR__Eb Gossypium raimondii cDNA clone GR__Eb43G19 5', mRNA sequence GTGCTCTTTATGCTTCTGTCA EST sequence (targeted fragment marked with yellow): GATAATAATAACTTTCTAAAATTAATACACATTTATACAAGTAACCAACTATAACTATAGTACTGAGTGGTAGATGAAAAGAATAAATTAAAAGAAGAAAAAAAAAGTGAAAGAAACTCATCTAGCAGGAATCCAATGGCAATATCTGAGAGGAACATGAAGGGCACTGTGGTAAATATTGGAGAGGTGTTCCATTCTTTCCAACAATGAATTTAAGGAAAGACCCTTGTATGTCTTCTGTTAAAATTGGTGTGTTGTTGGCAGCTTTAACACCACAGTTTTGAATGGAACCACCATTTCTTTGTACCCTTTTCTCAGCTTCTAGCATCAATCTTTCTAAAAGTTTCTCTTCTGCATCCCTTAAGAACTTGAATTTTGGAGGAGGTGAAGATCTAAGCTTGTTTAACTCTGCATCTGTGGATGATTCAAAGAGGGGATTGAATCCATTGCGGTGATAAGAATCAAAGGGGTTCAAAGGAGGAGACTTCAATGGTGGAGAAGCCAAAGGACTAAGAGGAGTGTCAACAGTTAACATAAGATCACTCAAGCTCCCTGTTCTGGATCCTTTTCTGCTCTTCTCACCTCTAGACCTGCCATCTTCAGACTCCAAATCTTCCTTTGTTTC | |||||||||
gi|48752263|gb|CO082782.1|CO082782 GR__Ea47I22.r GR__Ea Gossypium raimondii cDNA clone GR__Ea47I22 3', mRNA sequence GTGCTCTTTATGCTTCTGTCA EST sequence (targeted fragment marked with yellow): TCATATTTCATAAGATGGACATGAAAAATACTAAAAAAAATTAATTAGCGTTAATGCAGTAATTGCAATTCCATTTCCAAGCTTGAACTTTCAAGGGAGCGGTGGTAGTACTGAACATGGATCAATAAAAGTCTTCTTCTACGGAGCCGAAAAATGAATATGTCGGCTATATTTATACATGTTATGCTCTATTATACCATGGATAAAAACATAGAATTTTCCACAAGCAAGTGGTACCCTTGGATAAGGGGAATCACTTTAATGGTAATATCTAACAAGCATATAAAAGCATAGCATCCGAATTATTTTGACAAAAACATCACCAAGACTTATCCTCAAATTTGTGCGTAAGCTACCTGTATACGGAAGTCAAAAAAGACAAGATAAACAAAATTATACCAATCGATGTTGATGTTGGAACCTAACATGAACTTACATATGTTGAAGATCAAATTACATGACGAAGACCATCATCAATCTCTTAGTCCTGTAATAAATCTGTAAATTGCAAAAAAAAAAAAAGTAAACCACAAACAACAAAACCCATACATACACAGAAGAAATGTAATTCAACGGGTTTAGGGTTTAAAAGAGGGGCTATGAAAGGTGATGATGACAGAAGCATAGAGAGCACAAAGGAGTGGGATGCATGCACATAGGCAACACCATCATCTGTGCTCTCTATCTTCTGTCAACAACAATCACCAGTGCCTCCTCTTCAACCAACACCTCCCATATATACTATATAATATTATAATTATATATATGCTCCTTGAACTAATGTTTTCTCATCAAAAGAATCATTATAAAAAAGACCATAAATGTTACTTTAATAGGAAAATGTTCCCTAAAGAATGAAGTGAGAGAGTGAGAAAACATATAGGAAGTAGG | |||||||||
gi|48802721|gb|CO104035.1|CO104035 GR__Eb0032O20.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0032O20 5', mRNA sequence GTGCTCTTTATGCTTCTGTCA EST sequence (targeted fragment marked with yellow): AACCCCCCAATAAAAAATGATAATAATAACTTTTTAAAATTAATACACATTTATACAAGTAACCAACTATAACTATAGTACTGAGTGGTAGATGAAAAGAATAAATTAAAAGAAGAAAAAAAAAGTGAAAGAAACTCATCTAGCAGGAATCCAATGGCAATATCTGAAAGGAACATGAAGGGCACTGTGGTAAATATTGGAGAGGTGTTCCATTCTTTCCAACAATGAATTTAAGGAAAGACCCTTGTATGTCTTCTGTTAAAATTGGTGTGTTGTTGGCAGCTTTAACACCACAGTTTTGAATGGAACCACCATTTCTTTGTACCCTTTTCTCAGCTTCTAGCATCAATCTTTCTAAAAGTTTCTCTTCTGCATCCCTTAAGAACTTGAATTTTGGAGGAGGTGAAGATCTAAGCTTGTTTAACTCTGCATCTGTGGATGATTCAAAGAGGGGATTGAATCCATTGCGGTGATAAGAATCAAAGGGGTTCAAAGGAGGAGACTTCAATGGTGGAGAAGCCAAAGGACTAAGAGGAGTGTCAACAGTTAACATAAGATCACTCAAGCTCCCTGTTCTGGATCCTTTTCTGCTCTTCTCACCTCTAGACCTGCCATCTTCAGACTCCAAATCTTCCTTTGTTTCCTCCTTGATTG | |||||||||