miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GTGCTTGGACTGAAGGGAGC
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73892680|gb|DT495418.1|DT495418 WS01120.BR_G14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01120_G14 5', mRNA sequence 

GTGCTTGGACTGAAGGGAGC
||| |||||||||| |.|||
CACCAACCTGACTTACTTCG

EST sequence (targeted fragment marked with yellow):
TCCCGATACCCTTTCATTCTCTCTCAGCCAAACTCCTTTCTTTCTCCCCACATTATCTTAATTAGCAAAGCGACGAAGCCTCAAATTTCCAAGAACTCAGAATGGGGACTGCTGACGGAAGCTATGGTTCTTACACCTATGAGGCCCTCGAGAGGGAGCCTTACTGGCCATCTGAAAAGCTCAGAATTTCCATCACTGGGGCAGGGGGTTTTATTGCCTCCCACATTGCTCGCCGTTTGAAGGCTGAGGGTCATTACATTATTGCTTCTGACTGGAAGAAGAATGAGCACATGACAGAAGACATGTTTTGTCATGAATTCCATCTTGTTGATCTGAGAGTCATGGATAATTGCTTGAAGGTTACAAAAGATGTAGACCATGTTTTCAACCTTGCTGCTGATATGGGCGGGATGGGCTTCATTCAGTCCAACCACTCTGTCATTATGTATAACAACACAATGATCAGCTTCAACATGCTTGAAGCCTCCAGGATCAATGGGGTTAAGAGGTTGTTTTATGCCTCTAGTGCTTGTATTTACCCTGAATTTAAGCAGCTGGAGACTAATGTGAGCCTGAAGGAATCTGATGCCTGGCCTGCAGAGCCTCAAGATGCTTATGGATTGGAGAAGCTTGCAACGGAAGAGTTGTGCAAGCATTACACCAAAGACTTTGGAATTGAATGCCGTATTGGAAGATTCCATAACATTTATGGTCCTTTTGGAACATGGAAAGGTGGCAGGGAGAAGGCACCCGCTGCTTTCTGCAGAAAGGCTATCACTTCCATTGATAAATTCGAGATGTGGGGAGATGGACTTCAAACCCGATCTTTCACATTCATTGATGA


gi|73894126|gb|DT496864.1|DT496864 WS01124.BR_M09 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01124_M09 5', mRNA sequence 

GTGCTTGGACTGAAGGGAGC
.| |||||||||||.|.|||
TAAGAACCTGACTTTCTTCG

EST sequence (targeted fragment marked with yellow):
ACGCCTTTGCAGCTAGTTCTACTTCCAAGTGTTTGTGTTTTCTCACCATGGCAGCTTCTACATTGCAATACCATTTCGCCTTCTTCATCTTCTTTCTCGTAATTGCTTCTTTCAGTCCAAGAATCCAAGCTCAAGTTGATGAAACAAGCTTGAAGGCAATGAGAGATGCACTAGAATGGCCAATGTCCATGTATTATGATGAAAGCAGCGGTCTCAATGATGGGTTAGTGGGTTTTGACGATGGAGTTGTTGACGATGAAGAAAGTAGTCGTAGATCTTTGTTTTGGAGGAGAACGCATTATTATATCTCGTATGGAGCTTTGTCTGCTAATAGAATTCCTTGTCCAGCGAGGTCCGGGCGATCCTACTACAGCCACAATTGCTTCGCGTCTAGAGCTCCAGTGAATCCCTATTCCAGAGGGTGTTCTAGGATCGCTCGTTGCAGGAGATGAGAGGCAGGTTTTATTGAATTTGTGCTTGATTTAGTGCTAAATGCTATTTAGTAGATTGTGGTGATATGTATGTATGCGTGTTTGTTAAGGTGCGATTGTTCATGGGCTTGGATCATTTTCTGGCATTATGCTTAAAATGCATTTGGAGTATTTGTAATGGTATTTCTGTATGTGCTCGAATAGTGTTTATATTATAGTAATTAAATTACTACCAAAAAAAAAAAAAAAA


gi|52377485|gb|CV227243.1|CV227243 WS0166.B21_J24 PT-DX-A-7 Populus trichocarpa cDNA clone WS0166_J24 3', mRNA sequence 

GTGCTTGGACTGAAGGGAGC
 ||||||.||||||||.|||
AACGAACTTGACTTCCTTCG

EST sequence (targeted fragment marked with yellow):
GCAACCAGGTGGGTTGATAACTACAATGTCCCTGTCTTCTCCACTGATATTGCTGCTGTTCGTAGAATTGCAAAACGTGTTAGTGGGAGAGGAGGCGGGCTTCCTTCAGTTCAAGCAATGGCACTTGCACATGGTGATGATGTCATTGAGGTTGCTTGTAACTTGTTGGAACCAAGTAATGTGGGAGGAGAGATGGTTCAGCAAGAAGTTGAGAGACTCGCAAAGGAGGAGGGTATGGCTGTGGGGAAGGGATATTTTACAGATTTCTCACAGGATAAAATAATTGAAAATTACTTGAAGTTTTGTCCCCTAATGTAACCACAAGATGCAATTTTGTAACAGAGAAGGTATTGTCCCTTCTGTGAAAATTACTTTAAAAAAAAATGCTACGCTGAAAAGTGTCTTTCCAAGGGATTTTTGTTCCGATGCATGTGATGTGAATGGTTGTCCACACATGAAATGTGTACGTCTTTACCAGCATATTCATCATCTTAGAAGCGGTGAAGTTTTGGCATCATATTCTTGAGAGATTGCTTAGATGCAAAAATTCCTATAAACACTGTATATTTTGGTTCAACTACTTATATCTCTATATCTGCTCTTCGTTCTTCAAACGTTTATAAGAGTAAAAAAAAAAAAAAAAAA


gi|52493354|gb|CV240379.1|CV240379 WS0251.B21_D14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0251_D14 3', mRNA sequence 

GTGCTTGGACTGAAGGGAGC
.|||||| ||||||.|.|||
TACGAACGTGACTTTCTTCG

EST sequence (targeted fragment marked with yellow):
TGAAAAGGTTCTAGTTTGATGGTTCCAACTTCCAAGGTAGCTGCTCTAAGAGATGAAGTAGGCAATGGACCATCTTTGGATCGTCCGACTCGTTTCATAGCTGTTTCAGCTCTTATTTGGGGGCCATGATGGCCGTAACCAGAGAAAATAATGCTATGCAGTTAAATGCTGCATCCATTGCTGTCGATCTGCGGAGGAGACTGAAACCACCAGTGCCAAAACAATCAATTGGAAACATTTCCCAAGTGACAATACCAAATTGGCCAGAGAGTGAAAGTAATGTGTTGAGCTATAATGGTTTAGCAGGAAAACTTCATGAGTCAATAGGGATGATGAATGATGACTATATCAGGAAGTTTCATGCTGGTGGCGGGTACTTTAACTTCCTCAAAAGAGCTGGGGAGGAAGCTAGAAAGGGTTCGAATTTGACGGTGTTCGGTTTCAGTAGTTGGTGCAAATTTCCATTTTATGAAGCTGATTTTGGGTGGGGCAAACCTCTTTGGTTAAGTGCTGCCTTGAAGCTTAACAGGGTTGCCATTTTCTTAGATACGAAAGATGGTGAGGGAATAGAAGCATGGATTGGAGTGTCCAAGGAAGACACGGTAAAGTTTGAACAAGACCCTGGAATCCTTACCTATGCTTCTTTCAGTGCAAGCATACAAGCTTCATGTCTTCCGGTAGAGATTTTCTATTTTTTTCTGTCAAGAGGCTCATTTGTTCTTGAGCTATACAATAAAAGTAGCTTGCTAATTGCGACCGATCATGTCAGGTCACACCAATCCTTGCTTTATGACATCGAATATAAGACATTTGAGTTACCTTTCCAAGAATATAAGACTTGTGTTCAAGATGTAAATCATAAAAAAAAAAAAAAAAAA