miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GTGTTGGTACTAGTAGCAGCA
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|52393533|gb|CV235203.1|CV235203 WS01218.B21_C19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01218_C19 3', mRNA sequence

GTGTTGGTACTAGTAGCAGCA
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AACAACCGTGATTATCATTGT

EST sequence (targeted fragment marked with yellow):
CATCAGGGAACCGGATTCACTTTATCTGCCTCAATTACAAAGAGCGTATCTGTTACTATTAGTGCCAACAAGTCCAAATTAAGTAAATTAGGAATTTGGGTAGATACTACACTAACCCGTTACAAGGTGGTACAATACATGTATGGCAGTCCAGTAAGAACTGCGTATAAAGTTACATCAGCTCCTTTTAACTATTATGTCAGAGTTTACTATAAATGAATGG