miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GTTGGGCTTGCTGCTGGAGGA
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73882836|gb|DT485574.1|DT485574 WS02528.B21_J11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_J11 3', mRNA sequence 

GTTGGGCTTGCTGCTGGAGGA
|||||| |||||.| |.||||
CAACCCAAACGATGCCTTCCT

EST sequence (targeted fragment marked with yellow):
CCGATCTCCTCCACCCAACAGCCCGACAGGCGGTCCATTCTTCCCCACACACAAAAACAAAACCGCCTCACAGCCCCCACAGACCCAAATCCTCCACCCAACAGCTACACAACGCAGGTCCCCCCTCCATTCGGCCTCCAGTAGCAGCGGTCAAAACAACAGCCACAACAGCGCTGCCATCACTGGAGATTCAGTAGCTTACGGACCTCGTCTATTCCCTCACCCTCGACCTCAACGACGGACCAGCCACGACTCCCTCTCCCCGTGCAGCAGCGCCTTCTTCCTTCCGTAGCAAACCCAACCGCCGTGGCAACCAACAGGAGTGGAGATCATCAGTGCCGCCGCCGCCGCCCAACCGCCAGACCTGCCACCGGGAGAAGAAGGAAAGAACAGCTAACTGAGAAGAAGAAAGAAGACGGAAGTTAACAGATCTAAAAAGAAAAAAAAATACAAGAACAATCTGGACAGAATAGAATAAAATCAACTGCCTGCGTTTTCTTTTTTTTGTTACAGGTCACCGCCGGCGAGGAAGGGAGGAAGCCAGTCATATCCACCCTGTCCCCTGTTTTTTCTCTTACGGCGGCGCTTGAACCCACGCACCGCCACTGTTTTTATGGTCCGGAAGCTTGCCAGCAGGTTCTTGGTTTTTTTATAAGGGCTATTATGTAATTTTTCATTTGTGTGATGTGTTGTTTTATTTTAAATTTTTGTATGTATGAGAAAAACATAATAAAAATATAGATGTATGAGAAAAACATAATAAAAAGCGATGTTGGATGGACAAAAAAAAAAAAAAAAAA


gi|73888479|gb|DT491217.1|DT491217 WS02547.C21_B24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02547_B24 3', mRNA sequence 

GTTGGGCTTGCTGCTGGAGGA
|||||||||||| ||.  |||
CAACCCGAACGAAGATAACCT

EST sequence (targeted fragment marked with yellow):
GCAATAAAGTACCTCGTATTTCCCCCTCTGCCTCGGGTTGTCTCGCGATACCTTCTACAGCTTGGCCCGCAGCAGTACCTTGACCAACCCCAGGTCCAATAGAAGCAAGCCCAACGGCCAACCCAGCAGCAATAACGGAAGCGGCAGAAATCAATGGATTCATGATAAGTTCCTCGCACCAAAAAAAAGAAATGGTTAATGATACAATCAACCAATAAATTATGACTTAATTATTCCATCGATAAGATTTTCATCTAGTCAAAGTAACGCAACTAAGAGCTCCCAATTGAAGTAGTAATATTATTGAATCATCAGAACTACTTCGATATCTATTTTATAGTTCCTATCCACAGAGTTTTTGTGAATTCATAGAATTCATACAACTTTTTGTTTTTCCATTTCTTTCTTTGTTCCGAACCATTCTTTGAATTCGAACTCTTCGTTCTTTTTCTTGATTGAATTTCTTTATTCAATATTGAATTGAATTCACAGTTACAAATGAAACAGAAGGACTTTTATTGGAATCCCTACCCCAATTCTCAGTAATAGGAGGGCGGATTAGATATATCTTTTAGCTCATATATAACTAGCCTACTATTACATATACATGTCTTTATTCCATAACGTAAACCAACTATTTGTATCTTGGATTCAGTCGTATTTTAAAAACATTTTTCGAAACATCTATAAAGGAAAGTTGGCTTATAGCGATTATATATATTACATATACCTAGTTTGATCCCACTCTTCTAACGAAACCATTTTCTCTTGAATCTCATTTTTTGTAAACCCCTATCTTCCTTTTATTTAATTTAGAATTTAGCATTATCCCACATGGATACAATCAATCTAAATGGGCGAATTTCTTAGTCTAA


gi|73897792|gb|DT500530.1|DT500530 PX0015.BR_M03 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_M03 5', mRNA sequence 

GTTGGGCTTGCTGCTGGAGGA
||||||||||||||||| |
CAACCCGAACGACGACCACAG

EST sequence (targeted fragment marked with yellow):
GGGGGGCAATTTGGCAATTAAAGGGGGCAACAAAAAGAGAAACCCTAAAGGCTAAACATTTTTTCATCTCCTGCACCCTAGACAGCCGCCCCCCTTCCCCTGGATTTTCTTCTCAACTGCACAGCCGGCCCTCCCCTTGAATTTTCTTCTCTGCTCCCGCAACTGGACAGCCAGCCCCCTCCCGCTGGCCACATTTTTTTCTTCTCCCTCACCCAGCCGGCACAAGCCACAGCTCTCCCCCACACACGGCCAAACCAGCCATCACCATTCCCCCATTTTCACTCATCTTCAAAACCAAACCAGGAACCAGAGAACCCCTCCCTTTTCCAGCAGCCGATCTTCCCTCTCTCTCACCTGAACACCCACCGGAACCACAAAAGACAGCCCTCGCCCACTTCCCCTCTCAACCGAACCGTTTCCCCCATCTCCATCGACCAGCCTTCCAGAGGCAGCCGACCGACCGGCCAATCGGCCTTCAGCTGGCTACACACACCACTCATCTTCCTCTGTGAACACAGAGCCTCTCCCTCACAGAAACCAGCAGCCGATCCTCCCTCACAGACCGAACCGGCGACCTCCCTCATCTGGCTGACACCAGCAGCAAGCCCAACCGCCGCTGCTACCACCAGGAGAGGAGATCTCAACGTTGCCGCCCCTGGCCACAGATTCACCGCCGCCCTCTGCACACT


gi|60711392|gb|DN501202.1|DN501202 UM72TD09.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM72TD09 5', 

GTTGGGCTTGCTGCTGGAGGA
 ||||.|||||||||||||.
GAACCTGAACGACGACCTCTC

EST sequence (targeted fragment marked with yellow):
CGAATACGACGACACCTCGTTTCTTGAAGCCTGTAAACTGCAGCCCTCCTCTCCAGCAGCAAGTCCAAGAAGAACAGCAGCAGTTGTAATGAAGGTTGCTTCAGGAATAATGTGTGAACCATGTAATGGAAAAGGATGGCTTCTTTGTGACTTCTGTAAAGGGCTAAAAACCAATGTTAAAGCTGATAACAAGAGACTTTACCGTCGTTGCCCTTCTTGCAGAGCAATTGGATATGTGCTGTGTTCAAAGTGCAAAGTTTTCAAGTGTGTAACTTTCCCAAATTATAATGATGGTGAAGACCCTTCGCTTTGAGCTTAGCTAGCGTGATGGCATAACCAAGGAAGAAATATTCATGACTCAACTAGTTATTCTCACTTTAAACACCTTGATTGTTGTGAGGAGCTTATGATCTCCAGGTTACTGTCTTCTCCTTCAGTATGATTTTTTTTCCCTTCGCGAAAGATTTTCGTCAAGGGGGTACTTTGTAATGTTCATATCAAGAGTAATGCAATTGGTTGATTGAATGGCTCTTTGTTGAGCC


gi|73867438|gb|DT470176.1|DT470176 WS01920.C21_B14 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01920_B14 3', mRNA sequence 

GTTGGGCTTGCTGCTGGAGGA
|||||| |||| .|||||||
CAACCCCAACGCTGACCTCCA

EST sequence (targeted fragment marked with yellow):
CTTTCCCCTTTGTTATATCAATACCTTTGCCCAGTCACCCACAGCAGCCCCAGCACAGGCACCAGCAGTAGTTGTAGCACAACCTCCAGTCGCAACCCCAACACAGGCTGCTGCACCACACGGCATCACCAACGTCACCAAAATCCTTGAGAAGGCTGGCCACTTCACGATCTTTATCCGCCTTTTGAGATCCACCCAAGAGGAAAACCACTTGTTCTCCGCGCTCAATGATTCCAACACTGGTTTAACCATCTTTGCACCGACAGATAGTGCATTTTCGGAACTCAAATCAGGAACTCTCAATACTCTAAGTGATGGCGACAAGTCTGAGTTGGTGAAGTTCCACGTAGTTCCAACGTTCCTATCCACTTCCCAGTTTCAGACTGTAAGTAATCCTCTTGGAACATGGGCTGGAACAGGTAGTAGGTTACCACTTAATGTCACAAGTTATCCAAACTCGGTGAACATAACCACAGGACTTACCAATACAAGTTTATCTGGCACGGTTTACACGGACAACCAGCTAGCCATTTATAAGATCGAGAAGGTGCTACTTCCTAAGGACATTTTTGGATCCAATGCTCCAGCTCCAGCACCAGTACAGGCACCTGCACGAGAAAAACCTACTAAGGCGGTTCCTGCTGCTAATGTAGAGAGTCCTGTTGCTCCTGTGGATATATCTAGCGCAGTTACGTTTATGCATAATAATGTGGTTGTTGGATCACTCGTTATAGTTGCTGCTGCAATGTTTGCTTGTCATGTAGAAGGGTTTTGAAACTTGAGAGGAGATATGTTGGGCTTGGTTCCGGTTTTGTTTCATGATTTTGTTGACTTTGGATTCCTGTTGAAATTTGAATAATTCAGATTATACTTGAAAAAAAAAAAAAAAAAA


gi|38575455|gb|CK091130.1|CK091130 F050P58.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F050P58 3', mRNA seque 

GTTGGGCTTGCTGCTGGAGGA
||||||||||||||||| |
CAACCCGAACGACGACCACAG

EST sequence (targeted fragment marked with yellow):
GGCCATTTCCCTTTTCAACCGAACCCATTCCCCCATTTCCATGGACCAGCCTTCCAGAGGTAGCCGACCGACCGGCCAATCGGCCTTCAGCTGGCCACACACACCACTCATCTTCCTCTGTGAACACAGAGCCTCTCCCTCACAGAAACCAGCAGCCGATCCTCCCCCACAGACCGAACCGGCGACCTCCCTCATTTGGCTGACACCAGCAGCAAGCCCAACCGCCGCTGCTACCACCAGGAGAGGAGATCTCAACGCTGCCGCCCCTGGCCACAGATTCACCGCCGCCCTTTGCACACTGCAGCGCTGCCCAACTGCCGGCCACCTGAAGCGAAGGAGAAGATGTAAACAAAAGAAAGATCAACGATGAAGCTGATTTGAAAAGGCGAAGAAAAGAGAGCAGATCTAAAAGGGGAGGAAGAACCGAAACTTTGCTTGCGTTTTCCTTCTTTTTGCAGATGACAGTGGTGGTCACCGCCGGCAGGAAAAGGAAGGGGAGAAGAGGCTGACCCCGATCCCGCTGTTTCCAGTTGCTTGCGGTGGCGCGTGGGTCCACGCGCCGCAGTGGCGGTGGCGCGTGGGAAGACGCGCCGCCACTGTTCCCGCGCCCAGAAATCCAGCCGAACACTGTTCCAACTGTAGAGGGCTATCCCTGTAATTTCAGA


gi|73880844|gb|DT483582.1|DT483582 WS02523.B21_A04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_A04 3', mRNA sequence 

GTTGGGCTTGCTGCTGGAGGA
|||||| ||||||||.|||||
CAACCCAAACGACGATCTCCT

EST sequence (targeted fragment marked with yellow):
CCCCGACCATATTCACCTTCCCTCTCCCAGCCTCTCCTCTCTCAACCAGCCCCCCACAGAGAACCAGCCGGCCACAAGACAACCCCTCACAGCCCCCACAGACCCAAATCCTCCACCCAACAGCCACAACAGCGCTGCCATCACTTGGAGATTCAGTATCTTACAGACCTCGACTATTCCCTCACTTTTGACCTCAATGACGGACCGGACACGACATCCCTCTCCTCGTGCAGCAACGCCTTCTTCCTCTAGCAGCAAACCCAACCGCCGCGACAACCAACAGGAGTGGAGATCATCAACGCCGCTGCCCCCCTCTACAATCGCCAGACCTGCCACCCGAAGCAAAGGAGAAGAAGACGAAACCCATAACAAACTGACCCGCAAGAAGTAGGTCCGAAGAAGGAGAAATGAGAAATGCAGATCTGAAAAACAAAGAAAGAAAAAGCTAAAATCAACTGTTTGTGGCCTTTTTTTTGTGTTTCTTGTTGCAGGTAGAGGTAGCAGTCACTGTCGGTGAGGAAGAAGGGAGAAGCCGCTTTGGATCTCCCCTGCTGCCTGTTTTTTTTTGCGGCGGCACGTGAACCCACGCGCCGCCAGTGACGGTGGCGCGTGGAGGAGACGCACTGCTGCTGTTTTGGTGGTGCAGAAGGCTTTCCCTGTTATCCCAGATTGTTTTGGGGCTATTTTGTATTTTTTTTGTTTTGTTTAATGTACTATTTGTTTATTTTAAATTTTGATTGATTTGTAAATGGGAAAAAAAAAAAAAAAAAA


gi|38575244|gb|CK090919.1|CK090919 F031P78.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F031P78 3', mRNA seque 

GTTGGGCTTGCTGCTGGAGGA
|||||| ||||||||||||||
CAACCCAAACGACGACCTCCT

EST sequence (targeted fragment marked with yellow):
AACCCTAAACCTAAATTTTTTTCAACAGCCGCAAGCCTCCATTTCCCTGTTGACAGAGGTCGGCCGCACCCCACTCTCGTTGAAACCAAACCAGAGATTGCCTGCCTCTTGTGGACCATCTCCACTCCCCTCATTTCCCTTTCCTTTGGCAGCAAATCAGAAGACCCTTGACTGCCGCCCCGCTTTTAAAGAAAAAACCAGAGAAACCCCTGGCTTTGGGGCTTTTGATTTTCGGCTTCTTCTCCTTTCAGTCAGGCGCCCCATCCCTTTCTTCTCACCTCCTCCAGCCGCCGCTTTCACCTCCAGACCCGACAAAAGCCCCGCAGACCAGCGGCCGGACCCCTCTCACAGAACCCAAGTGTCTTTCCTCTTCTTCCCCGATCTCCTCCACCCAACAGCCCGACAGGCGATACATTCTTCCCCACACACAGAAACAAAACCGCCTCACAGACCCAAATCCTCCACCCAACAGCCACACAACGCAGGTCCCCCCTCCATTCGGCCTACAGTAGCAGCGGTCAAAACAACAGCCACAACAGCGCTGCCATCACTGGAGATTCAGTAGCTTACGGACCTCGTCTATTCCCTCACCGTCGACCTCAACAACGGACCAGCCACGACTCCCTCTCCCCGTGCAGCAGCGCCGTCTTCCTCCAGCAGCAAACCCAACCGCCGTGGCAACCAACAGGAGTTGTAGATCATCAGCGCCGCCGCCGCCCAACCGCCAGACTTGCCACCGGGACAAGAAGGAAAGAACAGCTAACTGAGAAGAAGAAAGAAGACAGAAGCTAACAGATCTAAAAAAAAAAAAAAAAAA


gi|3857746|gb|AI166461.1|AI166461 xylem.est.291 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence 

GTTGGGCTTGCTGCTGGAGGA
|||||| |||| ||||||||
CAACCCCAACGTCGACCTCCA

EST sequence (targeted fragment marked with yellow):
GAGCTTAATTTGCTTTGGTGTTTTGGTATTGTTTCAAGCTTTATATCAGGGACTGTAAAGATGAAGCAACAGCACTCACTCTCCTCTTTTTCATTTTTTCTTCTTTTACTCCATTGTGCTAATACCTTTGCTCAGTCACCAGCTGCAACCCCAGCACAGGCACCAGCAGCAGTTGTAGCACAACCTCCAGCTGCAACCCCAACACAGGCAGCTCAGCCACACGGCATCACAAACGTCACCAAAATCCTTGAGAAGGCTGGACATTTCACGATCTTTATCCGCCTTTTGAGATCCACCCAAGAGGAAAACCACTTATTCTCCGCGCTTAATGATTCAAGCTCTGGTGTAACCATCTTTGCACCAACTGATAGCGCATTCTCGGAACTCAAATCAGGAACTCTCAACACTCTAAGTGATGGAGACAAGTCTGAGTTAGTGAAGTTCCATGTAGTTCCTACTTTCTTATCGACCTCCCAGTTCCAGACCGTAAGTAACCCTCTCGGAACATGGGCTGGAACAGGTAGTAGGTTACCACTTAATGTCACAAGTTATCCAAACTCAGTGAACATAACCACAGGACTTACCAATACAAGTTTATCTGGCACAGTATACACGGACAACCAGCTAGCCATTTATAAGATTGAGAAGGTGCTACTT