miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GTTTCTCGGAATTCACTTTCCGGGAA
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73882848|gb|DT485586.1|DT485586 WS02528.B21_K01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_K01 3', mRNA sequence 

GTTTCTCGGAATTCACTTTCCGGGAA
 ||.|.|||||||||||||||...||
AAAGGGGCCTTAAGTGAAAGGTTTTT

EST sequence (targeted fragment marked with yellow):
GGAATTTTTTGGTCTGTCTGAATTTTAAACATGTCATTGTATAATCAATGATGTCTCCATTCATAAATGTTCTGATATTTGCTGAATCGAGCAGTGCTCTGATACAATCATGATTTGCATGCTGAAGTCTGATATTGTTTGCTGATTTTTTTTTTTGGAAATGTAGTGTGTCATATCTGTGGTCGGTTTTGATAAATGCAAGGAATTGTCCTGTATCATATCTGTGGCTGTGAAGAGCTTTTGCCTCCTCAATCCCCTGATGTTTGAAGCTTTCTACCAATGCCACTTTTGTCTCTTCATTATCTTCGTTGAGCCGTTCCCTATCATCTAAGAGGTTTAATTTGTAATGAGATGCCAACGTCGCTGTGTTATCCGTAGTCGTTAGTATGAGGCCAATTAAGGCTCCGTTTGTTTGCTGGAAAGTAGTTTCTTTTTGGAAAGTGAATTCCGGGGAAAGTGAATTCCAGAAAAGTGAATTCCGGGAAAGTATTTTTCGATGTTTGTTAGTGTAATGAAAAATAAGTTGGAAAACACTTTCTAGTGTTTGGTTATGTCATGGAAAATGAGCTGGAAAATAACTTATTAATGTTTTATTTTTCTCAAGAATATTTAAAAAAAAAAAAAAAAAA


gi|73894236|gb|DT496974.1|DT496974 WS01125.BR_B18 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_B18 5', mRNA sequence 

GTTTCTCGGAATTCACTTTCCGGGAA
|||||.||||| |||||||||||.||
CAAAGGGCCTTTAGTGAAAGGCCTTT

EST sequence (targeted fragment marked with yellow):
GGACAACAGCCGCTCTGCTGAAACCCAAAAACCCCTGAGCAGCTTTACAAACAGGGATTCAAGATGGCAATGGCATGGAGGCAGATAATCACAAACACAAAAAGGGCAGTTTCAATCCCAACACAACAAGCAATTTCTACACCTGGGTTCTCTAGATTCTTCTCCAAATCGTCCTCTCGTTACATCGTGAAAGTTGGAATTCCAGAGTTTCTAAATGGAATAGGGAAAGGAGTTGAAGCCCATGTGGCCAAGCTTGAATCTGAAATTGGTGACTTTCACAAACTTCTTGTTACTCGGACTTTAAAGCTCAAGAAACTAGGCATTCCTTGTCAACAGAGGAAGCTGATATTGAAATATGCTCACAAGTATAGGTTGGGGCTGTGGAGGCCTAGAGCTGAACCTGTGAAAGCCAAATAAATCTCGGAATCATCTGTCATTTGGAGGATTACAAGGTGTTTGTCGTTAACATTCTTGCATGCAATTACGGTTGCAAAGAGTTTAGGTTTCATGAAGGCCATGTTTGTTTCCCGGAATTCACTTTTCGGGAAACCACTTTCCAAACTTTCCTGTGTTTATTTGCTATTAGGAAAGTTGGTCAACGGAAAACACTTTCCAGTCAACGGAAACACTTTTCGAATTTGGTTTGGTTTTCAGGAAAGTGTTTTTCCTTTTGGCTGTGTTTGTTTTCCGGAAAGTGATTTCCGGGAAACCACTTTCCAAACTTTCCTGTGTTTGTTTGCCATTAGAAAAGTTGGTCAACGGAAAACACTTTCCAGTCAAAGGAAAATTTGGCTTGGTTTTCAGGAAAGTGTTTTCCTGAAAAATTTGGGCAGAAAACACTTTCCAGAAGTTGTGAAAAATTTAGAAATGTCATTATTTGCTGATTATATCAAATTTGATCCCCAAAAAAAAAAAAAAAA


gi|73882848|gb|DT485586.1|DT485586 WS02528.B21_K01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_K01 3', mRNA sequence 

GTTTCTCGGAATTCACTTTCCGGGAA
 ||||.||||||||||||| | ||||
GAAAGGGCCTTAAGTGAAAAGACCTT

EST sequence (targeted fragment marked with yellow):
GGAATTTTTTGGTCTGTCTGAATTTTAAACATGTCATTGTATAATCAATGATGTCTCCATTCATAAATGTTCTGATATTTGCTGAATCGAGCAGTGCTCTGATACAATCATGATTTGCATGCTGAAGTCTGATATTGTTTGCTGATTTTTTTTTTTGGAAATGTAGTGTGTCATATCTGTGGTCGGTTTTGATAAATGCAAGGAATTGTCCTGTATCATATCTGTGGCTGTGAAGAGCTTTTGCCTCCTCAATCCCCTGATGTTTGAAGCTTTCTACCAATGCCACTTTTGTCTCTTCATTATCTTCGTTGAGCCGTTCCCTATCATCTAAGAGGTTTAATTTGTAATGAGATGCCAACGTCGCTGTGTTATCCGTAGTCGTTAGTATGAGGCCAATTAAGGCTCCGTTTGTTTGCTGGAAAGTAGTTTCTTTTTGGAAAGTGAATTCCGGGGAAAGTGAATTCCAGAAAAGTGAATTCCGGGAAAGTATTTTTCGATGTTTGTTAGTGTAATGAAAAATAAGTTGGAAAACACTTTCTAGTGTTTGGTTATGTCATGGAAAATGAGCTGGAAAATAACTTATTAATGTTTTATTTTTCTCAAGAATATTTAAAAAAAAAAAAAAAAAA