| mature miRNA: GTTTGCTGCCTTTGTTTTGGT species: Gossypium raimondii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|48745968|gb|CO076487.1|CO076487 GR__Ea37N15.r GR__Ea Gossypium raimondii cDNA clone GR__Ea37N15 3', mRNA sequence GTTTGCTGCCTTTGTTTTGGT EST sequence (targeted fragment marked with yellow): GCAAAGCTAGTGTTGTCTCTGTCAACACAAAGCTCAGACCCTCAGAGGTAGAGGTATCAGCAACTTCAGCAATCCGATTAAGATCCCTTTGAAGAGACCGTCCCATACCCAACAACCCAACCTGAAGCTTAATAACACTAGTCCTTTCGCTAGCAGTGAGCACACTACTCTCAGACCGATCAGAAAGGAACCCGGAGACCAAAACAAAGGCAGCAAACCCAACCAAAATCAAGAAAAAACTCGAGCCGGCACCAACACCTACCCCAACTGCAGGCCCCATGTAAAACCCACCACCCCCAAATGGAGCAGGCGCATAATAAGGAGCCGAATACGAAGAAAACCTCGACCCTCCATTTCTAGGCACCGAATAACTCCTCGAAGACGAAGAACTCGAAGAAAAAGACCTTCCTCCCATCCTCCCACCTGATGCAGCCAATGCTACGTTATTAGGATCATACATTAGCAACAAACCCATTAAAACCGCGGCTATAGCGGGCTTTTTTAACGCGTTCAAAGCTTTTAACATTGTTTGAGCAATAATCTCGAATGGGTTTTTGTCATTTGAGCTGGAACTCAACTGGTTGTTGGAGCCCAAACTCGAGCTCGTCAAATGTTTCCTCTGCTCCGACGAGAAGAAGCATTTAACAGTGAACTTTGCCGAACGTTGACCGTTGAAAGCCAAAGTTCCAGTGAAATTAGATAGGCGAGGAGGGGAAGGAAGAGGCAAATGAAGGGGGAAATAGTGTTTCAAGTTCAAAGTGTTGGATTGGAGCAAAGAAGAAGTAGAAGTTGCCATGGTGAATAGAGAGAGATTACGAGCTTTGGGTGCGGAGATATTTTTGGAAGAAATGAGGGAAGGTGAGATCAAGA | |||||||||
gi|48827054|gb|CO125444.1|CO125444 GR__Eb08O21.r GR__Eb Gossypium raimondii cDNA clone GR__Eb08O21 3', mRNA sequence GTTTGCTGCCTTTGTTTTGGT EST sequence (targeted fragment marked with yellow): AAAAAGGCTGTGGACAATGAATCGAATTTACATCAACTGATACTGTCAAAGGCTGATGATAATACGGTGATGGAAGCGGTTGATCCAGAAGTCTCAGTTACATGCATGAACTTGACTCATGTCCGAAAGACATTCCAACTTGCTTTGTTGTGCACTAAGCGACACCCGTCTGAGAGACCACCCATGCATGAGGTTGCCAGGGCTTTGGTCTCCCTTTTTCCATCGGCTCCAGCGCCTAAGTTTTGTTCAGCTCCAACAAAACCAGTCGACTATGCTCGGTTTATCATAGACAAAGGACTGCAGCGGTCCCAAAAGGAGCAACAACAAAGGCAGCAAGTCCCCCAGGAGACCAACTCTTTTGATGCTCAATGGTTTGCTCGTTTCCGAGAAGTCATTTTTATGAACCCCCTTTAAAGCTATCTGTCTTGAGAGGATTCCCACTTTTGTTTGTTTCGAGGGGCAATTTCCGTCTCCAGATCATTTGAAAGTATATAAACATAGGGGCGACTGAGCAACTGAGTTTTCCCTTTTTGTTAGAAACCCTCTTTTGCTTTGGATGCGGCCAAATCGGAGCCAGTGATATATTATAATCAAGAAACTGGGTTAGATATTTAAATTTGTACTTAGTAACTGTATTTCAGGTATTACAATGTTCCAAGTATTTTTATAAACAAATTTAGGCGACTTTTCATC | |||||||||
gi|48823127|gb|CO124440.1|CO124440 GR__Eb07F22.f GR__Eb Gossypium raimondii cDNA clone GR__Eb07F22 5', mRNA sequence GTTTGCTGCCTTTGTTTTGGT EST sequence (targeted fragment marked with yellow): GGCATCTCTTTACTTCGCGCGCTCTTATTTGATCCGGTTCTCTCTCGACGCGCCATCGTCTCCATCACCATCGCCGCCGCTCCCACCTAGTTGTTTCTTCTATAAGTACGTATAAGGGCCATGCCACCGTTTACTGCTATAGCTTTGGATAGGTTAATTGAATCTGGAGATTCAAAATCTGTTCATAAATCTTCTCGTTATTTAAAACCACCTATCCCTCCTAACTCAAAGCTAAGGAGGAGGAACAGTACATCAGCTGCAGAAAGGAAGGGTAACCGCCCCCAAATTTCACCTGCCTTGTATGCTACTCCGGATGCAACTCCACTACCTGATTCAACATCTTTTTTCCCTTCTTCTCCTTACATCGTTAATCACAAGCGACGTGGACCTTGCCTTTCGAGGAGCTCTTCCGAAATATTATCACGGCAAATAACCCTTGAAGAAGATGAGGTTAACAGCAAAGTAAAGGTAGCAGACAAAGCATCACTGGCAGAAACAAAATATGTTGATTTATCGAAGGATGTTCCTTTTACTTCTAGCGTTCGTAAACCTAATGAAGAGAAGCATCGAAATGGTGTTTTTAATGGTCATGTCAATGCGGAGAAGGCAAATGTCCATGGTGGCTCCATTCAAGATGAGCACAAAAATGGTGTCCGGGATGGTGAATTGGGAAGCAATAATGGGGAAGTTGGAAGCTGCCTGATGAGTAATGGTTTGGCCAAGGATAGAGCTGTGCCAAAGGTTGGACCGCCAAACTCGGACAGATGTAGTGACAAAAAAGATTTCTTTGATCTGAATGAAATCACGAGTGCCACAAGTAATACTGATGGAGATGATCATACTGCGGCCGAAGGTGCTGGAAAATCTGCTG | |||||||||
gi|48816948|gb|CO118261.1|CO118261 GR__Eb020I11.r GR__Eb Gossypium raimondii cDNA clone GR__Eb020I11 3', mRNA sequence GTTTGCTGCCTTTGTTTTGGT EST sequence (targeted fragment marked with yellow): CTGTTATAGCTCGAATCCGAATCCGTTATGTCCCTTCCACCAGAATTCCAAACAATATATATGATGTAAACAAGGATGACATAAACAATATACATTGAAGAAAAGGCCATTGCTCCCCAAAGATTGATTTCCCCCTTAATCAATATCAAAATTAAGGACACAAGAACCAAAAGGAGGTAGCAAACATCTCTTACAAAGGCCGGTTTGTTGACCGCAACCCGTTTCCGGTGTACGAAAGTGCCTATCATTCCGACCACGATACAAGTCACAAAGAAAACACCACCTAAAACAGTGTTTAGGCCAACGTCCTGTGTAGCGCTATCCATGAAAGAGACTACGCTAGAAAACACATCAGGGGCACCGTTGCCAAGAGACAAGAGTGTAACACCAGCAAGCGTAGGGGACAATTTTAACAGGCTTGACAAGCTTTCAAGGGAATAACAGAAGTATTCAGAGGCTGTATTTCCCAAAAGATAAAACAAGACAATAAGCCAAGCAATCAGGAGGCAAAGACCCAACACAGGAAATCTTCCAAAATTGCAATAAAAATGGTAAAGATAATCAACATAGCCTTGATAAACACATGGGTTATTATTAGACTTGAGATAAGAACACTTGGCTTTATAATCATCTAAATCCTCCAGGGCTTTACAATCTTGCTGGCTATTGCGAAATTTAGAACCATTGCTCCCTAAAACAACTTGTGAAGAACTGGAACACATCATCAGGAAAACAGATGCCACCAAGAGGAGATGAAATGTTCATGAGAATGAGGATGACCCTCTTGTTTAAGGCTGTAATACCCAAGTACCCATACCAGAAAC | |||||||||
gi|48799039|gb|CO100353.1|CO100353 GR__Ea25K23.r GR__Ea Gossypium raimondii cDNA clone GR__Ea25K23 3', mRNA sequence GTTTGCTGCCTTTGTTTTGGT EST sequence (targeted fragment marked with yellow): GCCAAAAAGTTCAAAAATAAAAAACAGCACTAGTAGGTATCACCATCTGCATATTCAACAAAATGAATATGTATAAACACTCATATACTTACAGTAGAACCCTTCTGGAAAAAGGATCCACGTTTGTAGGCCACTTTAGGTGGCCTCTCCAGAAGGCGTGAATGCTTTTCGCATTTAAGCAAATTAATGACGCCATCAAGAATTTCAGGTTCCATGAATGACGTATGTTTGCTGCTTGCAGTGACATAGCTCCTCCATTTTGAAAGCCAAGAAGAAGGCAGCAAGTAGTACTTGCAATTTGAAGACAGCGGGATACTCTTGCCCGTGGCTAACTTTTCATGGTTTTGACGCTGTTTAAGCTTCATTTCTCTTCTAGAATCCTCCAAGCATGCAACTTCTGAAAGTGTATTGCTGCACTCAGGACACTCTTCAGAGTCGGAAGGAAAAGTTGAACAACCTGAAGAATCATCAGGTTTTACTGTAATTGCATCCTCATAAAAGAAGAGCCATAGCTTCTCAGGAACCAGCAATCGCTTAGCACCAGCAGCTTGCTCTGGCATCAGGTGCCCATGAGGGCACCTAATTGACATTGTTGGTCCAGCATCAGCTTCACAAGGTGCATCAAGGTTTTTTCTTTTCACCCACTGCTGTAACCATGCCTTTGATACATAGTAGGCTCCATCTTCGCACTTGGCTAAAAGTACATCTTCTGCAATCTCTTTCATCAATTTTCTTCGATCCCTATAGCTGTCTGCACATACAACTGTATGTGCCAGCATCGATAAGGCAGTCCAGGCAGTGATCACCTTTGGCAAATGTTGAGCCCCCATTGACTTAGAGAACTTCGTCCAGGCTCC | |||||||||
gi|48880779|gb|CO131801.1|CO131801 GR__Eb44E11.r GR__Eb Gossypium raimondii cDNA clone GR__Eb44E11 3', mRNA sequence GTTTGCTGCCTTTGTTTTGGT EST sequence (targeted fragment marked with yellow): GCATCGATCTGCTGTCTGCCTGGCCAATGCATCCTTAAACTTATGGATCGTCGCATTGGTGCAGCTAAATTGGCATAGACGCCCCTGAGCCCCTCTATAGAACCGGAAGAAAGGCAGCACATGGACATTAAGGGTATAACACATGGATTTGTGCTCCTCATAATTCACCTGAAGAAACTGCAAATCCGGATTCATCTTTGCCAATTGACAAATCTTTGGGAAAAGAGCCCTGCAGCCACCACAATTAGGGGAGAAGAAATCTACTATAACGAGTTTATCACCAGCATTCAAAAGCGAGTCCACAAGGTCTTGTGCAGATGCCACTTCTTTCATATTTGGTGGCAGTTCCTTCTCCCACCAGTTTTGAGTTCTACCAATAAGGCCACTTAGCATCTGATTCTGTGCTTTGATGGGAACTTGATAAAACCTTCTCTTGTTCACAGTTTTCTTCTCGAAATAGACCACTCTTTGCCCTTTAAAATCACACCTCAAAGCCATAGATTTCATCTTCAAAGAAGTAAATCTACTTTTTTTAAAACAAAACCCAGAAATTCTCTTAGAATAGAATGCACCTCCACCTTTTTGGCTCTTCTTCTGGCTATAGTCACAAGCTGCAAAGAGATTTGCTTTCCCCAAAATCTTAGCCATTGCTTCTTTTTTCTTTCTCTTTTTCTCTCGACAAAAACCAAAACCCAGAATGAAAAATGAACGCTGTCCCTCCAATTCCCAAAGAAAATCAAAATTAAAAGGAGAAGAGTTTTTTTGCTGTGTCTATG | |||||||||
gi|48826687|gb|CO125077.1|CO125077 GR__Eb08F23.f GR__Eb Gossypium raimondii cDNA clone GR__Eb08F23 5', mRNA sequence GTTTGCTGCCTTTGTTTTGGT EST sequence (targeted fragment marked with yellow): TGATGCACCTGCCTTGAAACTAGCTGATCTTTGAATTGCTATGGGCATTGCTGGAACGGAGGTAGCAAACGAAGCTTCTGACATGGTGTTGGCAGATGACAATTTCAGTACAATTGTTTCTGCCGTCGGTGAAGGAAGATCCATTTACGACAACATGAAAGCTTTTATCAGGTACATGATCTCGTCAAATATCGGTGAGGTTGCCTCCATATTCCTAACAGCAGCATTGGGTATACCTGAGGGCCTGATTCCAGTTCAACTTCTCTGGGTTAATCTTGTTACGGATGGACCACCTGCAACAGCTTTGGGATTCAATCCTCCGGACAAGGATATCATGAAGAAGCCTCCTCGGAGAAGTGATGATTCACTCATCACTGCTTGGATTTTATTCCGCTATCTGGTTATTGGACTATATGTTGGAGTAGCAACTGTTGGCGTCTTCATCATTTGGTATACACACGGTTCCTTCTTGGGCATTGATCTTAGCGGGGACGGCCACACCCTTGTCACATACCCCCAGCTCGCCAACTGGGCCCAGTGCTCATCCTGGAAAAATTTCACTGTTTCACCTTTCACAGCCGGGAACCAAGTCTTCTCCTTTGAAAATAATCCATGCGATTACTTCCAAGGCGGCAAAGTAAAAGCAATGACACTTTCCCTCTCGGTTTTAGTTGCCATCGAAATGTTCAACTCCCTTAATGCCCTCTCTGAAGATGGAAGTCTCTTGACAATGCCTCCATGGGTCAACCCTTGGCTCCTCCTCGCCATGTCTGTGTCATTCGGCCTGCACTTCTTGATCCTCTATGTGCCATTCCTTGCTCAAGTATTCGGTATCGTACCTTTAAGC | |||||||||
gi|48798848|gb|CO100162.1|CO100162 GR__Ea25G14.f GR__Ea Gossypium raimondii cDNA clone GR__Ea25G14 5', mRNA sequence GTTTGCTGCCTTTGTTTTGGT EST sequence (targeted fragment marked with yellow): GGCAACAAAAAAACATCATTAATACCAAATATCCAATACAAATACTCGTATTACCCCCCAAAAAGTACAAATACTCGTAATCTAGTTTTCAACACCAAAAGGTTTTTACATTCACAAAAGGGGTTTTCCCTTGAACATTAAAATGACAACCTCAAAAATATACACACTAGTTTTGGTCTTCAAACTTACCCTTGAATCATGCAGGGCTAGGATCCAAAAAATAAATCCAAACTGCCCTGCAACTCCAATTATACTGTAAGAATGTACACTGGGCAATGGAAATGGCAGAAAACCTAACTACATCATCTTCCGACACCAACCAAAGTTTTCTCCTCACTGTCCCTTTGTTTTGCGGATGTTGTCGGGACTGAAAGCGGGAGCTTTCTCGTTGAATCAGATGGAGCTTGTTTCCAAATAAGAATCTCTTCATGTGTGGGAATTGGTGTGTAGTTGAAGGAAAGGTCTTTGTTCGCGGATAATGCCAAAAGCTCCTTCTCCTCGAGCCCTTTTGTCGTGCTGAGGCTGCACCGGTCTGGTGTGTGTTTGGCTAATGCATCTCTGAATTTTTTGATCGTGGCATTGGTACAACTAAAGCTGCATACACGCCCCTGCGCACCTCGATAGAACCGGAAGAAAGGCAGCACATGGACATTAAGGCTATAGCACATTGACTTGTGCTCCTCGTAATTAACCTGAAGAAACTGCACATCTGGATTCATCTCTTGGGATGAAGAGCCTTGCAACCACCACAACCAGGGGAGAAGAAATCTACCACAACAAGCTTATCAC | |||||||||
gi|48813407|gb|CO114720.1|CO114720 GR__Eb016A10.r GR__Eb Gossypium raimondii cDNA clone GR__Eb016A10 3', mRNA sequence GTTTGCTGCCTTTGTTTTGGT EST sequence (targeted fragment marked with yellow): GACACCGAGTTTTTGGGCAATCAAACTAGTTAAATCATGCATGGAATGTGCTGCTTCATATGACTCAAAGAATGATGCTTCTTCAGGATTTTCAACAGCACTTACTTGCACCTTCACTGCCGAAGAACCATCAAGTGGCTGCATATAAGTTCCACCACCAACTTCAGCAAAGAAAAGGCAGCCAACTTCATTATTTGGAGAATGCTGGCCAGCATCCTTGAGGGAAGTTAGTGGAAGATTTGGACAAGCCAGCACACCCAGAACAACTTTTCCTCCATCTAGCAAAGCCAATGCTATTGCATACTGATCTCCTCTCAGAAAACCTTTAGTACCATCTATAGGATCTAAAACCCAATGTTGACCTTGGGAACCACCTTCGGATCTGCCACTGTCAATGGCCTTGAGAACGTCTTCTGTGGATAAAGTAACATTGTATGATCCATCACTAGTTAAAGAATAGTTCACAAGTTTTGTAATGCGCTCTACTATTTCCTGGGCACCATCTTTGCGAAGATCTTTAGAATCCTCCTCGGCAACTAATGAGAATTCAGCACGAAGTTCCTGCTGCAGCACAAAACTAACCAGTGCCTGTGAGCCATAATCAGCTACTGTTACAGGAGTTTTATCAGTTTTGGATTGAACATCTGATTGCAGCAAAGCCTTTTGTACATTCTGACAGAGCCGAGCAGCAAGAGAAGCTGCTTTCTATGCAGCAGCCAGCTCTTTATGATAAGACATTGCCA | |||||||||
gi|48829739|gb|CO128129.1|CO128129 GR__Eb14C16.f GR__Eb Gossypium raimondii cDNA clone GR__Eb14C16 5', mRNA sequence GTTTGCTGCCTTTGTTTTGGT EST sequence (targeted fragment marked with yellow): GAAGAAGGAAAAACCCCATAATTATATTTCTGCCATTGGAACCCACAAATAAAGTTTAGGTATTCACAACTGGTTTCAATGGATCAACCAAAATACTAACAAGTTAAAACAAAGACAGCAAACAAGCTAATAACACAAGGGGCAAAAAAAAAGAAAAGAAAAGAAAAAAAGGATGAAATCTAAGCTGGTGTTGTCTTCCTTGAAAAGGTTCACACTGTGGAAAATGTGAGCATCAAAATGGCCAAAACCAAAAGCCATTATAGCTAATATTTGAGTCCCATCAATCACTGATGTGTAATGCACTCCAGTACAATTTCTTCTTTATTAATACCGGGATTTTGTTCATTTCTAACCATTTTCTCATCTTCTTTCTTCTTACCCCACAACACACTGTAAAGACCACCAACCAGTAGGACAACCCCGGCAACACTTCCCCAGTGAAGGGTTTCCTTCCACAAAAATGCAAAAAAAATTGCTGTTATGACTAAAGCTAATGGAGTGAAAATTGCTGTGAAAACTGGACCTTTCTTCTCTATAGTCCATACTTGAAGCCAGTATGTGATGCCAGCAACAATTACACCACAATAGATTACAGCTAGAAGATGAACATCCCATCCAAGTTTCCAGGCTGATGGATTTCTCTCTGCTGCAATTGCCCAAATTGCCGATTGAATGCAACTAA | |||||||||
gi|48797197|gb|CO098511.1|CO098511 GR__Ea22N24.r GR__Ea Gossypium raimondii cDNA clone GR__Ea22N24 3', mRNA sequence GTTTGCTGCCTTTGTTTTGGT EST sequence (targeted fragment marked with yellow): AGCAGCATGATCCCATATTTTTTCTCGATACCCTTTGTGTGAAGACGCAGATATATGGCTCCATCTCCTCTGGATAGAGCACCATACTTCGCCTGGCTATCAATTCTAACCGGTGGTGCTTTGACGCCGAGTTTTTGGGCAATCAAGCTAGATAAATCATGCATGGAGTGTGCTGCTTCATAAGACTCAAAGAATGATGCTTCTTCAGGATTTTCAACAGCACTTACTTGCACCTTTACTGCCGAAGAACCATCAAGTGGCTGCATATAAGTTCCACCACCTACTACAGCAAAGAAAAGGCAGCCAACTTTATTATTTGGAGAATGCTGACCAGCATCACTGAGGGAAGTTAGTGGAAGATTTGGACAAGCCAGCACACCCAGGACAACTTTTCCTCCATCTAGCAAAGCCAATGCTATTGCATATTGATCTCCTCTCAGAAAACCTTTAGTACCATCTATAGGATCCAAAACCCAGTGTCGACCTTGGGAACCACCTTCAGATCTGCCATTGTCAATGGCCCTGAGAATATCTTCTGTGGATAAAGTAACATTGTATGATCCATCAATAGTTAGAGAATCGTTCACAAGTTTTGTAATGCGCTCTACTATTTCCTGGCCACCATCCTTGCGAAGATCTTTAGAATCCTGACAGAGACGAGCAGCGAGAGAGGCTGCTTTCTTTGCAGCAGCCAGTTCTTTATCATAAGACATTGCCACAATCACAGCAGAAGAAGAAGGAGGAGGAGGAGGCAAGTGACAGAGATGAAAAAGAGGGGGCTTTTTAAGAGAGGGGGAAACAAATCTCAACCAATTTATAGACATTTATTAAAATTGCAATTCAAAAATTTCGTAAGAAAATTCC | |||||||||