| mature miRNA: TAAGACTTTNTAGCATTGTCC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88325781|gb|CI648226.1|CI648226 CI648226 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza TAAGACTTTNTAGCATTGTCC EST sequence (targeted fragment marked with yellow): ATTAACATTTATATGAATGTGGACAATGCTATAAAGTTTTACATTATGAAACTGAGGGAGTATTAATCTAAAAAATCATCCGATGTGTAGTTTGGCCTTTACTATTTATTATTATGTCGGAGTTCTTGGTTTGTAAATATATCTTCCTGACCTAGAAGCAACCTCAGTGCAATGAAGCTTTGATGCTCAATATTTGGAATAGTTTTGTAATTCCGGTACTTCAAAAGTTCAAAATACTATCTTCTTGTGCAATGATGCTTTTCTGGGTTTCTCTACTATTTGGCCTATCTTTCTTGCCAGTTGGGGCCATATCCTCAAAATTTTAAGCAAGCTGAGGCTTTGCATAGTCAGAATATTTTGAGACAACAGCTGAGTGAAATAC | |||||||||
gi|88224389|gb|CI224238.1|CI224238 CI224238 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s TAAGACTTTNTAGCATTGTCC EST sequence (targeted fragment marked with yellow): GGAATATTCATCCAATCGACCATCTTCATAAAGCATTCAGGAGTACCAGAAAGTTCACAAATACATACATTCAGTTTCTCATATATAGGTGATACCATCATACTTAAGATAAAAACAAGGATCAATGACGATATACACAACCAGATATGTACCAAAAGATACTTCCTCCATTTCATATCATAAGACTTTCTAGCATTACCCATATTCATATATGAATCTAAACATATATGTGCCTAGATTCATTAGCATCTATATGAATGTGGACAATGCTATAAAGTCTTATAGCCTGAAATTGAAATGGAGGTAGTAATAGCTAAGCTACTTCAAACCGCAATCAACTAATTAACTGATCACCACATTACTCGCAGTACACTACAGTAGTAGGAACTGATCATCACATTACTAGTAGTAGACTGATAGAAGAAATAAGATATGATTCAACCAAATTAAGGTGATCGACTGTAGTTACCACGCATAGTTCATCAGAGTAGTATAGTCATCATCTAACAGATCGATCAGCATAAC | |||||||||
gi|44672025|gb|CR285459.1|CR285459 CR285459 Oryza sativa library (Han B) Oryza sativa cDNA clone p664f10p5, mRNA sequence TAAGACTTTNTAGCATTGTCC EST sequence (targeted fragment marked with yellow): GCATGTGTGGTACCGGGAATCGGCCTTATGGCCGGGATCTTTGGAGAATCTCTCGAGGAGAGAGGTACATCGACTCCCTGAGGATCTGATCTCGAAGAGAGCATGATTGTTGCAAGCTCAGCAGCTTTCAGTAGCAAGTATTTCCTTGGGAAAACAAACATTTTTCCCCCCTTAAGGGAATTGCTGAAAACATGTCGCAAGTTCTCGTAAAGAAAAACTTTTAAATTTAACTATGGTATAATTGTAATATAATTACATATGTAATAACCCCTCCGTTTCATATTATAAGACTTTCTAGCATTGTCCACATTTATATAGATGTGGGCAATGCCATAAAGTCTTACAATATGAAAACGGAGGAAGTCCTATATTGTAACTACGGTACTGCATTCTTTTCAAATTACAAATTACTTGTCATCCTGAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | |||||||||
gi|66928287|gb|CX115135.1|CX115135 EI095M15 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TAAGACTTTNTAGCATTGTCC EST sequence (targeted fragment marked with yellow): GGTCGGTCGGAATTCCGGGTCGACCACGTCGTCGATCGACCGGCCCGCCGCTGCGGCTCGCGCAACGGAGAGCACACATGTCTCGCCAGCAGGCGGCGCTCGCCCTCGCCTCCGCGCTCCTGCTGCTGCTGGCCGCCGCCGCCGCGGTGGCGCCGCTCGGCGCCGCGGCGGACGGCGGCCTCGTCCANGGCGGCGGCGAGGTCGCGAGGTCGGCCGCGAACACCCTGGCCGTCGGCGCCGACCCCGACCCTGCCTCCGCCGACGGCATCCCGGCCGACCGGGCGCCGGACGCCCACGGTTAATTAATTAATTAATCATCGCTGATTCGATCGTCTTTAATTTGTTGGTTTTACTTTTATTTCTTTTTTTTCTGTGTGTGTGATTGCCAGTGTGGTGAAGCTACTACAGGCTATATGATCCAAGAGATGTAGTACTTAAGCTTGTGATTGATCACTACTTCCTCCGTTTTAGGTTTCACGGTGTAAGATTTTCTAACATTGCTTATATTCATATAGATGTTAATGAATCTAATCATACATGTGTATAGATTCATTAACATCTATATTAATATGTATTATGCTATAAAGTCTTACATAGTGAATCGGATGAAGTATTACT | |||||||||
gi|88763780|gb|CI773196.1|CI773196 CI773196 Oryza sativa (japonica cultivar-group) root of seedling gamma-irradiated(45Gy), immi TAAGACTTTNTAGCATTGTCC EST sequence (targeted fragment marked with yellow): GATAATCTTTTAAACTCAGCAAAATGGCCCGTACCTGGTTCTCCACTCTCCCTGATAAATACTACCTCAAGCTTAACCGCAAGGGACACCGTTATGAAGTCTTGTTTACTGCATTAGTCCTCGGTGGTCTCCATTTCTGGGTTGTGAATCCATTGATCGATGCCCAAAGAAGAAGAGCTCTTGAACAACAAGGTGACTGGAAGAGAACTACTGTCGGTGGCAATGCTTTCGTTATCCACCCACAAGAAAAGGTCCAATTAAAGTTCTTGGCATAAGGAATATAGTATGTGAGCTGTCTATCTTATCTGTAAGAAATGTATGGCAGATAATCTATATCATATATGGTGCATCAGAAGTCATACTTTTGTTAACGGGATAATC | |||||||||
gi|66923126|gb|CX109974.1|CX109974 EI004P04 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TAAGACTTTNTAGCATTGTCC EST sequence (targeted fragment marked with yellow): TTTTTTTGGGGGATAAAGATAAACAGCGCTACTCCCTCCGTTTCATAATATAAGACTTTCTAGCATTGCCCATATGTATATATATGTCTAGATTCATTAACATCTATATGAATATATGAATGTGGGTAATGCTATAACGTCTTACATTATAAAACGGAGGAAGTAACTATTAAAACCGATGGTGATATATTTACAGACACCTCTCAAAAGAATCATATATTGTACTACAAGAAACCAATAGCTTAAGTGA | |||||||||
gi|88341481|gb|CI635679.1|CI635679 CI635679 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza TAAGACTTTNTAGCATTGTCC EST sequence (targeted fragment marked with yellow): ATTAACATTTATATGAATGTGGACAATGCTATAAAGTTTTACATTATGAAACTGAGGGAGTATTAATCTAAAAAATCATCCGATGTGTAGTTTGGCCTTTACTATTTATTATTATGTCGGAGTTCTTGGTTTGTAAATATATCTTCCTGACCTAGAAGCAACCTCAGTGCAATGAAGCTTTGATGCTCAATATTTGGAATAGTTTTGTAATTCCGGTACTTCAAAAGTTCAAAATACTATCTTCTTGTGCAATGATGCTTTTCTGGGTTTCTCTACTATTTGGCCTATCTTTCTTGCCAGTTGGGGCCATATCCTCAAAATTTTAAGCAAGCTGAGGCTTTGCATAGTCAGAATATTTTGAGACAACAGCTGAGTGAAA | |||||||||
gi|86858624|gb|CI273152.1|CI273152 CI273152 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TAAGACTTTNTAGCATTGTCC EST sequence (targeted fragment marked with yellow): TAATCAACATATACCTCATCAATAAACAAGCGACTTAATTCTAGTCTATAGTAATCCAAATACAATCCTTTGTTATATCTAGCGATCTCTACAATCTACATTGTCTATGTATCCAACATAATTCGCACCTCACCATTACTTTTAGGATAAGTGATTTTGCTCTGATCTGCCTCTGTATTCGTGGGAACTTGCTGCTGCTGCTCTTTTATCTCCTTCCCTTTTCCCCAGAGGAAGGAATAGAGGCCAATGATTATCATAAATGCCCCTAGCAAGCTGCAAGCAAAGCATGTTATATATTATAAGACTTTCTATAGTATTATCCATATTCATATAGATGTAAATGAATCTAGACATATATGTGTATAGATTCATTAACATCTATATAAATGTGGGCAATGTTATAAAGTCTTATAATATGAAACGGATGGAGTAGTATATATAGTGCCTCTCATGTGGTAGCTAGTCCATGCTTTTGCCGGACTTGATACCGTACATATATAAAACAGTACGACCCTAAGACTGAATATACAGACATGCTGTCGCAGTATTAATTCTCACCTCCCGACAGAAATGTCGCTTCCAAGCAGCATCGAGTCAAGGACGACGGTGATGATCAGCGCAAGCGA | |||||||||
gi|88356533|gb|CI652720.1|CI652720 CI652720 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza TAAGACTTTNTAGCATTGTCC EST sequence (targeted fragment marked with yellow): ATTAACATTTATATGAATGTGGACAATGCTATAAAGTTTTACATTATGAAACTGAGGGAGTATTAATCTAAAAAATCATCCGATGTGTAGTTTGGCCTTTACTATTTATTATTATGTCGGAGTTCTTGGTTTGTAAATATATCTTCCTGACCTAGAAGCAACCTCAGTGCAATGAAGCTTTGATGCTCAATATTTGGAATAGTTTTGTAATTCCGGTACTTCAAAAGTTCAAAATACTATCTTCTTGTGCAATGATGCTTTTCTGGGTTTCTCTACTATTTGGCCTATCTTTCTTGCCAGTTGGGGCCATATCCTCAAAATTTTAAGCAAGCTGAGGCTTTGCATAGTCAGAATATTTTGAGACAACAGCTGAGTGAAATACTTTTG | |||||||||