| mature miRNA: TAAGGCTGACATGTGGGCCCGA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88835699|gb|CI370804.1|CI370804 CI370804 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): GGAAACCAAAATTTAGTTGCTACTATTATTTATTTCTATATTTTACACACCAATCTAAAATACTATTGTTCCTCACAAAATTAAAGCTTGCAAAGTCACAAGGATACAAGATCCACACACACAATCCCACAAACTTTACACAGGCACTTTGCAGGCTTGCAGCACAACGCCCAGTTGCAGCTCAAAAGCAAGCAAGGCAAACGGACGTGTGGCCCACATGTCAGCCTCACAGTGAAGGTGAAACACCATATGGCATAGTGCAGAGTTCAGACTTCAGACAAGCTCAAACATTCAGAGTTCAGTTCAGCAAGATCGTCAGTCGAGCAGAAGAGAGGCCTGCCTGACCAGGTGGCCTCTGCGCTCGAACACCTGCCTCCTGCGCCTCTCGAGGTCCTCTCCACGGCGGCGATCTCCTCCATCTCGCGGTC | |||||||||
gi|88236636|gb|CI235838.1|CI235838 CI235838 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): GGTAAAAATGGAGATTAATAAAAGACAAGATCCGAAGAAGCCAAGCAGGCCCCCCTACACGAAATCAATTTCCTAGAGAGAGAGAGAAGGGAGTACAGGGTACAGAGCAGCCAAGAACAGATGGAGCATCAGTAGCCGTTGCGATGGGGAACCCCACATGCGCGAGTCCACGACGCCACCACCACCAACCTCCTCCTCCGCAACATGCCGCGCAAGCATCAGTCCACATGGTGATTTGCTTCCCCGGCAGCCACTGACACCTCCACTAACCGCGAGATTAGGAAGGGGCTCAACGGCTACTTTCCCACTTGGGGCCAAGCCTCTGGTCTGCTTGGCGGGAAATGCAGGTGTTCTTGCTCCCGGGCTCACATGTCAGTTTTGACCCCGCGGCTGGATGAAGCTAAGACTAATCTGAACTAAAGAAGAAAGAATTAGCGGAAAATGGATGGAACAACACTAGTGGACTGGATCGGGTGATGCCGCCGGCCGAGGGGAGCCGGCGATCACGCCGGGGATGGCTGGGAGGTTGGGTCGGCCGACGACGGGATGT | |||||||||
gi|88903982|gb|CI006215.1|CI006215 CI006215 Oryza sativa (japonica cultivar-group) green shoot Oryza sativa Japonica Group cDNA TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): TACCAGAGCGAGTATTGCACACACGCACAAGAACGCGCTAACCTTGTAGCCGTGTAACCGTTGCGCGCCCGACGACAAGCCCGGATGCCGATGAATTCAAACCCAATCACATGAAAACCACACCCGAAACAAACGGACAAAACGAAAATGTGTGAGCCAGGCTTAGCTATCCTGGCCGTCCCTTCCTCACGCCCCCACCTGTGCCCAGCTGATGAGCTGAACCAGGTGGGCCCCACCTGTCAGCCTTGAGGAATGTTGGCGGCTCAGCCGTCCCCTCCGCTGCTGCCGGCGTTGGCTGCGGTGCTGCTCCGGCACTGGTCGGCGGGCCTGGACTCCATTGGGCCGCCGATGGTGGGGCACCCGTTGGCGGCAGAAGCGGACGGTAGCTCCATGCAATTGTAAGAGAGGCACAGCGCTGCGGAGTCCGGCAGCGGCAGCGGCGGCACCGGGAAGCCCGTCAGGAAGTTGTGCTGCGCGTAGAAGGTCGTCATGCGGCCGGCGAACACGCTACGGGCCACCGCCTCCGGCACCT | |||||||||
gi|86497343|gb|CI139976.1|CI139976 CI139976 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): TTTAACCATGTAATTAACAGGAGTTAATAACCATGTAGCTCTAGATGTTGTTCCATACATAGGAATCATTAATAACAAGTTAACAACAGCTACGAGACTTTGTTCCAGGATACGTCAGCCTGAACTATATAAGCAGGCTTCCTTCCATGACAGACAGATTCAACTATCTACATCAGCATAAGAGATGTTATGTATCTCTATGCACAAAAAAACCTGAAACCTGTAAACTGCTTACCTACCTCCTTCGGATTGACACAAACAAACGACAGTATATGCAAAAGCCAGCCTAAGTTCAGATCAAGGGAAGCACATTTGCTACCCCTTTGCCGTTGTTGCTTGGCTTTGGCCACAGGCGGGCCCATATGTCACCCTTGGGCATCGTTGATATCAGCGCGCCCTCGCGTTCCAGCTCTTGCATGAGTTGCTCAAATCTTGGAGTTGGCTGAGCAACAAAAGCAAACATCCTGCCTTGGGGAATTCCTAAGCTTGGGTCGATCTGTTCACGATTTGCCGGTTGGGTAGCAGCCATTGAAGGATGATTGGCCCGGGATGCGTTTGATCCACCGATTGGGGGAGCCATGTTCCGGTCAGCTGCGTCTTGCATCTCCGCTGCTTCAGGNTCTTGAGGTTCAGTATCCATGTTGG | |||||||||
gi|89181152|gb|CI045235.1|CI045235 CI045235 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTAAAAAATAAACACCCCCTAAAATAGTGCCTCCCTTTACATTAGCTGACTTAGTAGAGTATGAACAGAGTTGTTTAAATGGACACTGCCAGCTACTCACAATGAACAGAGTAACACAGACGCAGCGTACAAACTACCAGAGCGAGTAATTGCACACACGCACAAGAACGCGCTAACCTTGTAGCCGTGTAACCGTTGCGCGCCCGACGACAAGCCCGGATGCCGATGAATTCAAACCCAATCACATGAAAACCACACCCGAAACAAACGGACAAAACGAAAATGTGTGAGCCAGGCTTAGCTATCCTGGCCGTCCCTTCCTCACGCCCCCACCCGTGCCCAGCTGATGAGCTGAACCAGGTGGGCCCCACCTGTCAGCCTTGAGGAATGTTGGCGGCTCAGCCGTCCCCTCCGCTGCTGCCGGCGTTGGCTGCGGTGCTGCTCCGGCACTGGTCGGCGGGCCTGGACTCCATTGGGCCGCCGATGGTGGGGCACCCGTTGGCGGCAGAAGCGGACGGTAGCTCCATTGCATTGTTAGAGAGGCACAGCGCTGCG | |||||||||
gi|88215359|gb|CI215208.1|CI215208 CI215208 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): TTTTTTTGAATAAATTAAGAAAACTCAAATAAAATATTAAAATGGAAAATTTAGTGTCAAAAGGTAGGATTTGAATTTAGATAAATTTAGGTCCAAGTTTCATTGGAATCGGATCTACGGTTTAGGAGATATGTGCTTCTAAAGATTGGAATTTGAATTAAATCTAGAAAATGTGAAATAGTACTGTACTGGGGCCCACCTGTCAGCCTTTCTTTTATTTTTCTTTTCTTTCTCTCTCCTCCTCTACTTCTTCCTCCCGTCACCTCCTCCTCTTCAATTAGGAGCCGAGAGAGAGAGAGAGGGAGAGAAAAGGGCGAGCGGGGAGCCGGGCTTCCAGTGGCCAAAGTGCGGTGACGTCGGCGGCATATTGTGTTCCCGGTCGACGCGCACTCGGGGAGGTTGGTGGCTGGTAGAGAGGAAGGTTGAAACGGCCGGAACGGCGACAATACGAGCTCAG | |||||||||
gi|87031404|gb|CI261778.1|CI261778 CI261778 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): GAATAAATTAAAATATTAAAATAGCAAATTTAGTGTCAAAAGGTAGGATTTGAATTTAGATAAATTTAGGTCCAAGTTTCATTGGAATCGGATCTACGGTTTAGGAGATATGGGCTTCTAAATATTGGAATTTGAACTAAATCTAGAAAATATGAAATAGTACTGTACTGGGGCCCACCTGTCAGCCTTTCTTTTCTTTTTCTTTTCTTTCTCTCCTCCTCTTCTTCTTCCTCCCGTCATCTTCTCCTCTTCAGTTAGGAGCCGAGAGAGAGGGAGAGAAAAGGGCGAGCGGGGCGCCGGGCTTCCAGTGGCCAAAGTGCGGCGACGTCGGCGGCATATTGTGTTCCCGGTCGACGCGCACTCGGGGAGGTTGGTGGCTGGTAGAGAGGAAGGTTAAAACGGCCGGAACGGCGACAATACGAGCTCAGTTTCGGCCGGTAAAAGTGGCGGCGGTGGTGGCTTATCTCGGAGGGGAAAAGGAAGGGGAAAGTAGGGGAATGGATTTGCCTCATCGAGGCGAAGGTAGTGGCGCGAGGGCTTGGGCGGCAGG | |||||||||
gi|89198818|gb|CI003555.1|CI003555 CI003555 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): GAAATTTGTTCCCATGCACAACATCTGATGAAGAGCTGAAAACCAAAATTTAGTTGCTACTATTATTTATTTCTATATTTTACACACCAATCTAAAATACTAGTGTTCCTCACAAAATTAAAGCTTGCAAAGTCACAAGGATACAAGATCCACACACACAATCCCACAAACTTTACACAGGCACTTTGCAGGCTTGCAGCACAACGCCCAGTTGCAGCTCAAAAGCAAGCAAGGCAAACGGACGTCTGGCCCACATGTCAGCCTCACAGTGAAGGTGAAACACCATATGGCATAGTGCAGAGTTCAGACTTCAGACAAGCTCAAACATTCAGAGTTCAGTTCAGCAAGATCGTCAGTCGAGCAGAAGAGAGGCCTGCCTGACCAGGTGGCCTCTGCGCTCGAACACCTGCCTCCTGCGCCTCTCGAGGTCCCTCTCCACGGCGGCGATCTCCTCCATCTCGCG | |||||||||
gi|87010682|gb|CI312374.1|CI312374 CI312374 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): GCTTAAAAGTTTTAAACAGGTGAGCTATTAGAGCATCTCCAACAGTCTCTCCAATTCTGACTCTCCAAATATCTATTTAGCCAACTCTCTATCTAATTTAGCAAATCAAATTCTTGTTTACTTCAATGACAAATAGGACCCATATGTCAGCCTCAACTAACCTTCTTCCATCTTTTTTTCCCCACACATACTACATCTCCTTTCTCCCTCCAGTACTACTACTCCCCCACTGGCACCCCTACCTCGTGCGGTGACGGCGGACGGCGCCTACCTCGGTGCGGCGACGGCGGACGGCGACGGCGACGACAACTTGCGTGCCGACGGGCGGAGGCGGAGGCGAGGCGGCGGGTGGCGGCTCAGCGAGAGGCGGGGCGGGCTGAGGCGGGGCGACGACTGCGGCGAGTGAAGGCCAGCGGCTGCGGCGAGCAAAGGCCACGGCGGGGCTGGTGGAGGCGGGGCAACGGCTTGCGACGGCTGCGGCGAGCGAAGGCTGCGGTTGCGACGAGCGGGGAAGGCGGGCTGTGGGCCGAAACGGCGGGCGGGCGGCGAAACAACGGGGGCCGGGTGCCAGCGAGCGGCGGGGTGGGGCCGCCGTCTAANCCTTCCCGTAATAGTTGCTCCTTTCTTGGCCTTGNCCTGGGTTTGCTGNTGCTTCNA | |||||||||
gi|86600799|gb|CI356556.1|CI356556 CI356556 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): GCCACTATTATTTATTTCTATATTTTACACACCAATCTAAAATACTATTTGTTCCTCACAAAATTAAAGCTTGCAAAGTCACAAGTGATACAAGATCCACACACACAATCCCACAAACTTTACACAGGCACTTTGCAGGCTTGCAGCACAACGCCCAGTTGCAGCTCAAAAGCAAGCAAGTGCAAACGGACGTCTTGGCCCACATGTCAGCCTCACAGTGAATGTGAAACACCATATGGCATAGTGCAGAGTTCAGACTTCAGACAAGCTCAAACATTCAGAGTTCAGTTCAGCAAGATCGTCAGTCGAGCAGAAGAGAGGCCTGCCTGACCATGTGGCCTCTGCGCTCGAACACCTGCCTCCTGCGCCTCTCGAGGTCCCTCTCCATGGGGGTGATCTCCTCCATCTCGCGGTCGCATTCGGCGATCATCGCCGAATACTGGAG | |||||||||
gi|88238307|gb|CI238156.1|CI238156 CI238156 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTGGGGTTTGAATTTAGATAAATTTAGGTCCAAGTTTCACTGGAATCGGATCTACGGTTTAGGAGATATGGGCTTCTAAATAATAGGATTTGAATTAAATAGGGAAAATACAAAATGTTACTGTGCAGGGGCCCACATGTCAGTCTTTCTTTTTCTTTTTCTCTTCTTTCTTCTTCTTCTTCCTCCCGTCATCTTCCTCCTCTCCTTCTTCCCGTGTAGCAACAGAGAGAGAGAAGGGGCGCTGGGGCTCCAGTGGCCGGGGATCAGCGACGTCGGCGGCAACTTGTGTTCCCGGACGACGCGCATCTGGGGAGGATGGTTTCCGGCAGAGGGAGATGAGGAGTTGGCCGGAACGGCAAGTAGAAGAGCTTCTCTTCGGCTGCAAAGGAGGTGGTTGTGGTGGTTGCTATGGGGTGGGGGAGAAGGGAAAAACGGGAAAAATGGGTTCGCCGGAGGGAGGGGGAGTCAGTGGTGCAAGGAT | |||||||||
gi|88990501|gb|CI107888.1|CI107888 CI107888 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage Oryza sativa Jap TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): AATCTCTGAATACATGTAATTAACAGGAGTTAATAACCATGTAGCTCTAGATGTTGTTCCATACATAGGAATCATTAATAACAAGTTAACAACAGCTACGAGACTTTGTTCCAGGATACGTCAGCCTGAACTATATAAGCAGGCTTCCTTCCATGACAGACAGATTCAACTATCTACATCAGCATAAGAGATGTTATGTATCTCTATGCACAAAAAAACCTGAAACCTGTAAACTGCTTACCTACCTCCTTCGGATTGACACAAACAAACGACAGTATATGCAAAAGCCAGCCTAAGTTCAGATCAAGGGAAGCACATTTGCTACCCCTTTGCCGTTGTTGCTTGGCTTTGGCCACAGCCGGGCCCATATGTCACCCTTGGCATCGTTGATATCAGCGCGCCCTCGCGTTCCAGCTCTTGCATGAGTTGCTCAAATCTTGGAGTTGGCTGAGCAACAAAAGCAAACATCCTGCCTTGGGGAATTCCTAAGCTTGGGTCGATCTGTTCACGATTTGCCGGTTGGGTAGCAGCCATTGAAGGATGA | |||||||||
gi|88960668|gb|CI382349.1|CI382349 CI382349 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): GGTAAAAAATGGAGATTAATAAAAGACAAGATCCGAAGAAGCCAAGCATGCCCCCCTACATGAAATCAATTTCCTAGAGAGAGAGAGAAGGGAGTACAGGGTAAAGAGCAGCCAAGAACAGATTGTGAGCATCAGTAGCCGTTGTGATGGGGAACCCCACATGCGCGAGTCCACGAGGCCACCACCACCAACCTCCTCCTCCGCAACATGCCGCGCAAGCATCAGTCCACATGGTGATTTTGCTTCCCCGGCAGCCACTGACACCTCCACTAACCGCGAGATTAGGAAGGGGCTCAACGGCTACTTTCCCACTTGGGGCCAAGCCTCTGGTCTTGGTTGGCGGGAAATGCAGGTGTTCTTGCTCCCGGGCTCACATGTCAGTTTTTGACCCCGCGGCTGGATGAAGCTAAGACTAATCTTGAACTAAAGAAGAAAGAATTAGCGGAAAATGGATTGGAACAACACTAGTGGAC | |||||||||
gi|87039411|gb|CI194033.1|CI194033 CI194033 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): GGTAAAAAATGGAGATTAATAAAAGACAAGATCCGAAGAAGCCAAGCAGGCCCCCCTACACGAAATCAATTTCCTAGAGAGAGAGAGAAGGGAGTACAGGGTACAGAGCAGCCAAGAACAGATGGAGCATCAGTAGCCGTTGCGATGGGGAACCCCACATGCGCGAGTCCACGACGCCACCACCACCAACCTCCTCCTCCGCAACATGCCGCGCAAGCATCAGTCCACATGGTGATTTGCTTCCCCGGCAGCCACTGACACCTCCACTAACCGCGAGATTAGGAAGGGGCTCAACTGCTACTTTCCCACTTGGGGCCAAGCCTCTGGTCTGCTTGGCGGGAAATGCAGGTGTTCTTGCTCCCGGGCTCACATGTCAGTTTTGACCCCGCGGCTGGACGAAGCTAAGACTAATCTGAACTAAAGAAGAAAGAATTAGCGGAAAATGGATGGAACAACACTAGTGGACTGGATCGGGTGATGCCGCCGGCCGAGGGGAGCCGGCGATCACGCCGGGGATGGCTGGGAGGTTGGGTCGGCCGACGACGGGATGTCCGGGCCGACGCGGCAGCCCTCGAGCATGAACACCACGTCGCCCATGGC | |||||||||
gi|33656483|gb|CF279097.1|CF279097 14ETL--05-E10.g1 Rice etiolated leaf plasmid cDNA library (14ETL) Oryza sativa Japonica Group TAAGGCTGACATGTGGGCCCGA EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTAGAAAGCAAGGGTCGATAAATATTGGTTCACTTGTACAAAGTACAGATAAAAATACATTGATACATGACACGGAGAGAGCCATGCACACCACTTATTTGGACACACAAAGGGCAAGGGTGCATATTTTTTTAAGCAACACAAGCTGAATTTACGGGCCCACCTGTCAGCTTTTTTTTGGTCGAGGCCGGAAACTTTTGTGAAAAACAGCAACACCACGCATGCAGAAGAAGACAAATTATTACACACACAAATCGACGACACGGGGGCCGGCGACGTACGGGGAGGTCGTCGCCGCCGCCGGCGACGTTGTGATGAG | |||||||||