| mature miRNA: TAAGTGTCTCAGTTTTGAACT species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270427827|gb|GT811079.1|GT811079 CCXG9603.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG96 TAAGTGTCTCAGTTTTGAACT EST sequence (targeted fragment marked with yellow): CATTTGAGAAATGGAGGAAAAAGTAATGACAATGGAGTCCCAAGCTGAGGCACTTGGTCAGTTAGGAGCTGATGATCTAGAAGGAAAGTTTGCAATGCTTGAGACTACATCAGTTGACGATGATCTTGCACAACTGAGAAAAGAACTGTCCGGGAGCTCTTTGAAGGGCGAACTTCCTCCAGGTAGGCCGCTCCGAGACACAGAGATCGAGAACGAGCTAAATGAACTCCGGAAGAAGGCCAAAGAGTATTAGATTTTACAGGCCATGCCCCTGCAATGGGCTTGACAAAATCTCTCATCAGAGAACCCCAGACGAGAGTATAGCCTGCAGATTTCTCCAATGCACATTTAAACCTCGTTTTTTGTGTAGAGGTATGGATATAGGCGAAAATTTCTCAGCATTTTCCCCTCGAATGACATTGTACAGTTAACCATTACTAGAATGTAAATCCCATCTCGTTTTAGAGCTTCTCCGAGTGCAAATAAATCCTA | |||||||||
gi|270375834|gb|GT760520.1|GT760520 CCXF2532.b1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo TAAGTGTCTCAGTTTTGAACT EST sequence (targeted fragment marked with yellow): CAAATGCGGTTTTGAGTTCATTTGAAGACCCTGAGAAGATCCTAGATCAAGCTGTTTTGGAGATGAATGATGATTTAATAAAGATGCGGCAAGCCACTGCACAGGTCTTGGCATCTCAGAAGCGGCTTGAGAACAAGTACAAAGCTGCCGAACAAGCTGACGCGGATTGGTATCGAAGGGCTCAACTTGCTCTTCAAAAGGGTGACGAGGAACTTGCCCGTGAAGCCCTTAAACGGCGTAAATCATATGCTGACAATGCAAGCTCCTTAAAGGCCCAGCTTGATCAGCAGAAGAGTGTCGTTGAAAATCTTGTCTCAAATACCAAGCTTCTTGAGAGCAAGATAGCAGAGGCCAAGCAGAAAAAGGATACCTTAAAAGCCCGTGCTCAATCAGCCAAGACTGCAACAAAAGTGAGTGAAATGTTGGGGGAATGTAAATACAAGTAGTGCCCTGTCAGCATTTGAGAAAATGGGAGGAAAAAGTAATGACAATGGAGTCCCAAGCTGAGGCACTTGGTCAGTTAGGAGCTGATGATCTAGAAAGGAAAGTTTGCAATGCTTGAGACTACATCAGTTGACGATGACCTTGCACAACTGAGAAAAGAACTGTCCGGGAGCTCTTTGAAGGGCGAACTTTCTCCAGGTA | |||||||||
gi|270480125|gb|GT862040.1|GT862040 CCYP14725.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TAAGTGTCTCAGTTTTGAACT EST sequence (targeted fragment marked with yellow): AGTGTCGTTGAAAATCTTGTCTCAAATACCAAGCTTCTTGAGAGCAAGATAGCAGAGGCCAAGCAGAAAAAGGATACCTTAAAAGCCCGTGCTCAATCAGCCAAGACTGCAACAAAAGTGAGTGAAATGTTGGGGAATGTAAATACAAGTAGTGCCCTGTCAGCATTTGAGAAAATGGAGGAAAAAGTAATGACAATGGAGTCCCAAGCTGAGGCACTTGGTCAGTTAGGAGCTGATGATCTAGAAGGAAAGTTTGCAATGCTTGAGACTACATCAGTTGACGATGATCTTGCGCAACTGAGAAAAGAACTGTCCGGGAGCTCTTTGAAGGGCGAACTTCCTCCAGGTAGGCCGCTCCGAGACACAGAGATCGAGAACGAGCTAAATGAACTCCGGAAGAAGGCCAAAGAGTATTAGATTTTACAGGCCATGCCCCTGCAATGGGCTTGACAAAATCTCTCATCAGAGAACCCCAGACGAGAGTATAGCCTGCAGATTTCTCCAATACACATTTAAACCTCGTTTTTTGTGTAGAGGTATGGATATAGGCGAAAATTTCTCAGCATTTTCCCCTCGAATGACATTGTACAGTTAACCATTACTAGAATGTAAATCCCATCTCGTTTTAGAGCT | |||||||||
gi|270464360|gb|GT844592.1|GT844592 CCYP4699.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TAAGTGTCTCAG-TTTTGAACT EST sequence (targeted fragment marked with yellow): GTCTCAGACTTAGTACAACTTTGTACTGAGTTAGTACAAAATCTGAGACACTTATTATGGAAGTATGTAGTATTTGTTTCGCAAGCAGAAGCGTTGGCGCGTTAAGCTGTACTTGAGCTAATTATACTCCTCTAACATGGCCTGCCTTTGCAATATGCTTTCCATCTTCCACATTTCGGTGGCAAATTGGCAATGCATTTCGGTTCCGTGTGGGAGGATAGCATGTCTTATGCCTAACTTTGTGAGTCACAATCTTTGATTTACAGCTTCCGCATACTTATGCAACCACATTTGTTGTCTGTTGACAGGCTGATGGGTTCGCAGCTAAAGAAAGAGTCGGCGTCAAGGCCGACCACAGAGGGCTGCTGTGCGACGAGAACGTGTTCAAGCTTCTGAAGAAATGGCTCGGCGCAAGCGAGAAGACACGGTGACGGCGGATGTCCAAATCGGAAGTGGTCGACATATATATATTTCTAGAGAGGAGGAGCTCTGATCACTGATCAGGCCACACTCAGACACTCTCCATGGAGATCAGTTCCTGATAGACTTGGCCGCAGTTTCTTCAGGATAATGCTTAGTTGATTATCCCCTTACACTGAAGAGATGTGCACGCAGATATACAACTGACTGTAGAGCACACTTGTACGTCAGCAATGCTATTCCATGTAAGCAAAATCTGCGACGTTGTTCATATCCAGTAAAGGAAAAATTGGGGTGCTGC | |||||||||
gi|270417207|gb|GT798904.1|GT798904 CCXG9287.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG92 TAAGTGTCTCAGTTTTGAACT EST sequence (targeted fragment marked with yellow): CAGGCTCCGTCGCCAACCAAATGTCAAGAGATTTGTTGTACGGAGTAATCTCTTCGATAGACTGACTAGGGTTGCCAGGTCCTATGCAAATGCAGTTTTGAGTTCATTTGAAGACCCTGAGAAGATCCTAGATCAAGCTGTTTTGGAGATGAATGATGATTTAATAAAGATGCGGCAAGCCACTGCACAGGTCTTGGCATCTCAGAAGCGGCTTGAGAACAAGTACAAAGCTGCCGAACAAGCTGACGCGGATTGGTATCGAAGGGCTCAACTTGCTCTTCAAAAGGGTGACGAGGAACTTGCTCGTGAAGCCCTTAAACGGCGTAAATCATATGCTGACAATGCAAGCTCCTTAAAGGCCCAGCTTGATCAGCAGAAGAGTGTCGTTGAAAATCTTGTCTCAAATACCAAGCTTCTTGAGAGCAAGATAGCAGAGGCCAAGCAGAAAAAGGATACCTTAAAAGCCCGTGCTCAATCAGCCAAGACTGCAACAAAAGTGAGTGAAATGTTGGGGAATGTAAATACAAGTAGTGCCCTGTCAGCATTTGAGAAAATGGAGGAAAAAGTAATGACAATGGAGTCCCAAGCTGAGGCACTTGGTCAGTTAGGAGCTGATGATCTAGAAAGAAAGTTTGCAATGCTTGAGACTACATCAGTTGACGATGATCTTGCACAACTGAGAAAAGAACTGTCCGGGAGCTCTTTGAAGGGCGAACTTCCTCCAGTAGGCCGCTCCGAGACACAGAGATCGAGAACGAGCTAAATGAA | |||||||||
gi|270405618|gb|GT783853.1|GT783853 CCXG1132.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG11 TAAGTGTCTCAGTTTTGAACT EST sequence (targeted fragment marked with yellow): AAAAAGTAATGACAATGGAGTCCCAAGCTGAGGCACTTGGCCAGTTAGGAGCTGATGATCTAGAAGGAAAGTTTGCAATGCTTGAGACTACATCAGTTGACGATGATCTTGCACAACTGAGAAAAGAACTGTCCGGGAGCTCTTTGAAGGGCGAACTTCCTCCAGGTAGGCCGCTCCGAGACACAGAGATCGAGAACGAGCTAAATGAACTCCGGAAGAAGGCCAAAGAGTATTAGATTTTACAGGCCATGCCCCTGCAATGGGCTTGACAAAATCTCTCATCAGAGAACCCCAGACGAGAGTATAGCCTGCAGATTTCTCCAATACACATTTAAACCTCGTTTTTTGTGTAGAGGTATGGATATAGGCGAAAATTTCTCAGCATTTTCCCCTCGAATGACATTGTACAGTTAACCATTACTAGAATGTAAATCCCATCTCGTTCC | |||||||||
gi|270473373|gb|GT858234.1|GT858234 CCYP12563.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TAAGTGTCTCAGTTTTGAACT EST sequence (targeted fragment marked with yellow): GACTGCCCTCGCGTCGTCATTCCCCCGGCTTTTCCTAATCCCCCACTTGGGGCCGAGGGTTCTGGACCGATCCCGATCCTTCTAGACTCTTCGCCGCCCCCTTCTTAAAGCCAGCGGCGCCCGCGGAACGGCAGTAGTAGTAGTACCATTCAGCTGTTTGTTGAAACCATTGGCTGGCTGGTGGCTCGGAGTGGTGACTCGCGGAGGATTCGAGTGATTCGCATGCGGCGGCACCAAGCATGAGGCGACAACTGCATTACTTGCTGGGAAGACGCAAGTATGACAGCGAGACATGCATTACTTGCGGGAAAGGCGCAAAACGAATAGAAGATCATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAGCTGTCAGCAAAACAGAAAGTTTTGTCAGTTTCCTTCAACTATGAATTATACTCCCTCTGTCCAACAAAAGATGTCTCAAGTTTGTCAAAATTTGGATGTATCTAGACATGACTTAGTGTATAGATGCATTCAAATTTAGTCAAAGTTGAGACATCCTTTGTTGGACGGAGGGAGCATTAGAAAATAATCGAGAAAGGAATGGCAATCTGTTAGTGAAAACCTATAACTACTACTCCCTCTGATCCAAAATAAGTGTCTCAGTTTTGAACTAAGCCTAGTTCAAGTCTAGTTCAAAACTGCGACACTTATTTTGGGATCAGAGGTAGTAGAATAACTGCATTAT | |||||||||
gi|270418269|gb|GT804133.1|GT804133 CCXG12564.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1 TAAGTGTCTCAGTTTTGAACT EST sequence (targeted fragment marked with yellow): AAGCTGCCGAACAAGCTGACGCGGATTGGTATCGAAGGGCTCAACTTGCTCTTCAAAAAGGGTGACGAGGAACTTGCTCGTGAAGCCCTTAAACGGCGTAAATCATATGCTGACGATGCAAGCTCCTTAAAGGCCCAGCTTGATCAGCAGAAGAGTGTCGTTGAAAATCTTGTCTCAAATACCAAGCTTCTTGAGAGCAAGATAGCAGAGGCCAAGCAGAAAAAGGATACCTTAAAAGCCCGTGCTCAATCAGCCAAGACTGCAACAAAAGTGAGTGAAATGTTGGGGAATGTAAATACAAGTAGTGCCCTGTCAGCATTTGAGAAAATGGAGGAAAAAGTAATGACAATGGAGTCCCAAGCTGAGGCACTTGGTCA | |||||||||
gi|270377327|gb|GT759199.1|GT759199 CCXF1678.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo TAAGTGTCTCAGTTTTGAACT EST sequence (targeted fragment marked with yellow): TGGTGTCTAAACTTTTATATGAAGAACTTGATTGTGCATGGTTGGGATACGATCTTGGCAAATTAAGTTTCAGTTCATCTAATTGCTTGTATATACCTAAGGACTAAGGTTATGTGTCTTCTATTACTTGAGAAATGACTTGTGCTACTATCCCTTCTTGCTGATTGTTCATCAGCAATCAGTGATGTCTGGTGAAAAATCATTTGAACATTCGATTCTTCCAAATAGTTATGTTTTTGTGTTCTCAGTAATGACAATGGAGTCCCAAGCTGAGGCACTTGGTCAGTTAGGAGCTGATGATCTAGAAGGAAAGTTTGCAATGCTTGAGACTACATCAGTTGACGATGATCTTGCACAACTGAGAAAAGAACTGTCCGGGAGCTCTTTGAAGGGCGAACTTCCTCCAGGTAGGCCGCTCCGAGACACAGAGATCGAGAACGAGCTAAATGAACTCCGGAAGAAGGCCAAAGAGTATTAGATTTTACAGGCCATGCCCCTGCAATGGGCTTGACAAAATCTCTCATCAGAGAACCCCAGACGAGAGTATAGCCTGCAGATTTCTCCAATGCACATTTAAACCTCGTTTTTTGTGTAGAGGTATGGATATAGGCGAAAATTTCTCAGCATTTTCCCCTCGAATGACATTGTACAGTTAACCATTACTAGAATGTAAATCCCATCTCGTTTTAGAGCTTCTCCGAGTGCAAATAAATCATTTTACTTTTGGTAATTCTTCGTTGCC | |||||||||
gi|270376299|gb|GT758393.1|GT758393 CCXF1177.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo TAAGTGTCTCAGTTTTGAACT EST sequence (targeted fragment marked with yellow): AAAGGAAAATGTCCTGTCTGTTCTGTGGAGCGGAACAGATGTTTCGGTTGAGTTTGGATTTGATATGAAAAAGATTTACTTCTACCTGGAATGCAGGAAATACAAACTTGAACTTTCCTATGAGAGCATATGGGAGATCCAGCTTCACCGCCCACCCGCTTATCGGTCACAAAAGAAGTTCCTTTTGATCCAGGTTGAGGCTGCTCCAAAAATTTATGAACTGAACCAACGCCGTGCTGGCTTTATGTTCGAAGATCCATTGTTCAACTATTTTAGGGATGATACGGATGATCAATGGACCAGAACAACTGATTTTACTCCATCAGCTAGCATTGGGCAATCATTTATTCTTTGTCTGGAGCTACCCTATCATCATGATCTCCCAAAGATTCGTGACTACTTTGTTTACTATGAAGAACACAATGATGACTTCCACTGCCGGAGTGGTCATTCATATTCTTGTGATACTCGATTTGTTCCGAATGTGAAATCTCATCATTTCATTGATGTACCTTATGAGATACTCTTCAAGATCAACCACTTGGTTCAGAATGGGACACTTAGTGGGCCAACACTTGATGACAACTTTTTTTCGTATGGTCAGCCCAGGATTTGTATCTATTGACCATATAAAGCGTGCACTGGAAAAATTGTCATACCAAAAAAAGACTTGTTTGAATCCAACAAATTGGTTATCTGAACAATATGCAATAATCAAGAGATCATGCTACGTGTTAG | |||||||||
gi|78016289|gb|DV484676.1|DV484676 5371_G01_M01Z_003 Brachypodium distachyon leaf EST library Brachypodium distachyon cDNA clone TAAGTGTCTCAGTTTTGAACT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAGAAGGCTCACCACGGTCAGACGCGGGCGAGCGGTGATCCATTCTTGCAACATTGCGTGGAGACGGCCGTGCTACTGGCCAAGATCGGGGCGAACTCGACGGTCGTCTCTGCTGGGCTTCTGCACGACACCATTGATGATTCATTCGTGGACTATGATCACATCTTCCACATGTTCGGGGCTGGTGTGGCGGATCTCGTGGAAGGGGTTTCAAAGTTGAGCCACTTAAGCAAGCTTGCTCGTGATAACAACACAGCAAGCAGAACTGCTGAAGCAGATCGCTTGCATACAATGCTTCTTGCAATGGCCGATGCGCGGGCTGTGCTAATAAAGCTAGCGGATCGTGTGCATAACATGAAGACTTTAGAAGCTTTGCCTTTGGTCAAACAACAACGATTTGCTAAGGAGACTATGGAGATCTTTGTGCCTTTGGCCAATCGATTGGGGATTGCTAGCTGGAAGGACCAACTAGAAAATCTTTGCTTCAAGCATTTGAATCCAGAGGAGTACACGGAGTTGTCATCAAAACTTACAGAAACCTTTGATGAAGCGCTAATCACGTCTGCTGTGGATACACT | |||||||||