| mature miRNA: TAATACTCCCTCCGACCCAAA species: Avena barbata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|240328490|gb|GR339481.1|GR339481 CCOW1652.g1 CCOW Avena barbata leaf, pooled from different levels of rain and nitrogen (L) A TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): ACCATAGTACTGCGACTAGGCGGGCCAAGAGAATATCGCTTTCTCGAGCATGACAGCGATTCCGACTAGCGTTGTCAGTGTCTGTTTTGGAGGAGTCTGACATAGATCAACAGCAGTTCTAATCTATGTGTATCTCCTGTATCTATCTGTATTTACATGTCCTGTAATTATGGATAGGAGGCCTAGGTTCTGGTGTAGTAAGATAGTTTCTGACAACACAGTTGGGGGAGATAGAAGAGAGACAGTAGGTGCTGTCTGATGTTGTGATCATTCTAGCCAGGCTGCTAACCTTGTAATGCACTCTTGAAGCTGTCTAATTGTATCATGTGCTCCCAGGACATTGTAAGAGGGGAAGAGCGAACAGTGTAACTCTCCCCTGATGTTTTCTTGTAAGATACGGGCTGAGAATGGAACTAAATTATGTAGTAGTACTCCATAATTTATAGTTCCATCCTAAAATCAGCCGCGTATCTTACATACTAAAATGGATGTATCTAGACATGTTTTAGTGCTAGATACATCCATTTTAATGACAAATAATATGGATCGGAGGGAGTATAAATTATTGAGAATATTTAGTTGTAAGATACGGGGCTGCAAATGACCGAAACAGGTCATTCAACTTTGTGTGCTTTTAAATAATCATCGGGGCTTCCAAGC | |||||||||
gi|240294128|gb|GR318531.1|GR318531 CCOP1284.g1 CCOP Avena barbata leaf, grown under ambient rainfall (L) Avena barbata cDNA clo TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): GGCGACGTGCACGAGCTCAGATATGAGGCGATGCAGACGAGCTTGGAGACGGATGATGCAGACGAGCTTGGAGACGGACGCGGACTGCTGGGTAGCGGCAGGCGGCGGAAGGTGAGGAGGACGGTGACGGACGCCGAGAAGATTTGATTTTCATTTGCTAAATTAGAAAATCTTCAAATGTATTAAGGATTTATTTGCAAAATGACATTTGTACTGTGTTCGCATCAATTCATACGGGCCGGAGGGAGTATTATTTTTCTAG | |||||||||
gi|240290387|gb|GR313284.1|GR313284 CCOO1169.b1 CCOO Avena barbata leaf, grown under ambient rainfall (H) Avena barbata cDNA clo TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): AAAAATGCTAATTTGGATCGGAGGGAGTAGTTATATCTTTTCACCTATACTCCATTTAAACATTCTAGTGAACTGTGAGCAGAAAAAAATGGAATCTGAAATTTCGGAACTCCTGGTTGCTGCAGAGAGGACCATGGGCCTCTACTTCTCCTATGATATCAACGTAACACTTAATTCACAGAAGCTATGTGATATAGACGATGAGTTCAAATCACGTCCTCTTTGGAAACAGGCAGAACCGAGATTTCTATGGAATAGCTACTTGCTGGAACCTCTAATTGAGAACAAACTGGACCAGTACTTGTTGCCAGTCATTCAAGGCAGTTTTCAGAATATCCATGCAGAAGTCGGGTCAGAGAAGGTAGATGTGACCCTCATTGCACGTAGGTGCACAGGTAGAATAGGTACTCGTATGTGGAGGCGAGGAGCTGATCCAGAGGGTTATGCCGCAAACTTTGTTGAATCAGAGCAGATAGTGCAATCAAAAGGGTATACAGCATCCTATGTACAAGTACGAGGTTCTATGCCATTCTTGTGGGAGCAGATTGTTGATTTGACCTACAAACCTAGCTTCGACGTTGTTAGACAAGAGGAAGCGCCACGTGTACTTGAGAGGCACTTTAATGACTTAAAAAAGAAATATGGAGCTGTCTTGGCTGTTGATCTTGTCAACACAAATGGTGGTGAAGGGCGACTCCGTGAAAGATATGCAAAATCCATTGAACCTATTCTCAATGATGATTTAAGATATGTGCATTTTGACTTCCATCGTATTTGCGGTCATATCCATTTCGAGCGCTTTCTCAGCTCTACGAGCAAAT | |||||||||
gi|240375189|gb|GR365430.1|GR365430 CCOY6606.g1 CCOY Avena barbata root, pooled from different levels of rain and nitrogen (L) A TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): AACTAACAGCTGCTGACGGCAGTGGAGAGGCGACGGCGAGGGATGGAGCTCGTGCGTGTGGCGTCCGTCGAGCACGAGCGCGCCTCCTCCGTCGATCTCGAGCGCATGTGCGTGGTCGCTCTTGAGGTCCCACGCGTGCGCGTCCCTCCGTCGACCTCCTACGCGTGCGCATCCCTCCGTCGACCTCCCGCGCGTGCGCGTCCCCTCCGTGGAGCTCCGGCGCGCCCTCTCCGTCGACCTCCGGCGCTCCCTCTCCGTCGAGATACGGTGCGCCCTCTCCGTCGAGCTTCGGCGCCCCCTCCGTGGAGCTTCGACGTGCCCCCTCCGTGGAGCTCTCGCGTGTCCCCTCCTTAAGCTCCCGTGTGGGACTTCAAGGGCAATCAGAATGGCGGCGCAGCCCTTGGAGGGCGACCAGACCGGAGGCATGGTCCAGCACGCGGCGGGGTACGGCCGCTGTCCTGCGCTGGCCGGGATGTGGGCGCCGGAGCTCGGGACGAGGCTAACTAATCGAATCAGAGGACTGTATTGTAATGATTTAAAACAGTCTAGGCTATTTAACAAAAAAGTAATTCTATAGAGGCCGTGTCGGTTATTTTGGGACGGAGGGAGTAGTTAAAAGCGAATCTTTTACTCGTCTAACCTTTTATTGCTTCGTCGGTCTGTTGTGGTGTAGCAAGTATGAAAATCCAAAGTTGGC | |||||||||
gi|240311513|gb|GR326668.1|GR326668 CCOS3098.g1 CCOS Avena barbata leaf, grown under high rainfall (H) Avena barbata cDNA clone TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): TCAAATAGGCGAGGGGATCGATTCCAAAGTGCAGCCTTCGGCGAGCTGGGCGTTGTGCGTGAGCTGGGAGCTGCCGCGAGGATGGGGGCGACCAGCGCGGGTCGATTCCAGCCCGCCCGCCCAAGGATCTGGGCGGGATCGCGTCGATTCCGGCTGACCACGCGAGGATCTGGGCGAGATCGCGTCGATTTTGGCCGACCGCGCGAGGTTCTGCGCGAGCGCGCGTCCACTCCGGCTGGGCCGCGCGAGGATCTGGGCGAGGGCGCTCTTTTGGCTGGGCCGCGTGAGAGACTCGCGTCGATCCTGAGATTGGGATTCAAAATTTGATAGCGTCGGCTGCGGGTCTTGTTCCGACAATTTCAAGGGTATTTCGTACACATGCACAATTCTTGGTGCTGTCGGAAAAACGTAAAACGACTTATATTTTGAATTGGAGGGAGTATCAGATAGC | |||||||||
gi|240337627|gb|GR349831.1|GR349831 CCOX4468.g1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) A TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): ACATTTCCAGAATGATGCCCATTCTGGCATGGCATTTGTTTTCGATGATATGCAATGTGTCTTTCAGGTGTTGTTAGGGGCTGTGGTTGCAAAAGATTGGTGCTTGTGTCAATCTCAGTGCATACTACCTTGTCGGCGTTCCAGCAGCGTTATTTTTTGCCTTCTTCTACCATTTTGGCGGAATGGGATTGTGGTTCGGAATAATGTGTGGACTCATCGCGCAGATGCTTCTGCTACTGTCCATTACCCTGTGCACCAACTGGGAGAACGAAGCTTCCAAGGCAAAGGACAGAGTTTTCAGTTCTTCCCTCCCTCTAGACATGACGACATGAACATGCAAGATGCATCTTGGTAAGAACACGGTGCAAAGGAGAGACACGGAACTCACGAAGAATTTGTCGCGAAGAAAACTGCCGCGTCTCGATGTCACCAGCAGCATGGGCTTCCTTCAGAGACGTCGTCAGACCGTTCTGCTTTGGTGATTTTTTGCGATGGAGTGGCATAAGATGTACTCCCTCCGTTTCAAAATATAAGATGTTTTAGGTTTGTAAAGTAAATGAATCTAGACCCTTTTTAGTGTGTAGATTCATCCCAAAGTTGAGTAAATCTATATACTAAAACAAGTCTAGATTCATTTTCTTCACAAACCTAAAACACCTTATATTTTGAAACGGAGGGAGTATTGGCAAGCAAACGCATTGCCTTGATATGATTAGGCCATATGAGAATAATAAATTATTCTATTGACC | |||||||||
gi|240328419|gb|GR335183.1|GR335183 CCOU2167.g1 CCOU Avena barbata leaf, pooled from different levels of rain and nitrogen (H) A TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): TGCAGTCTCTGTGGACATCGCTTGTTCAGAAGTACGAGGAGAGCAGAAGGATGAGGAAAGCAAGAAGACATGGCCGCATTTCTCAGCCATGGATAGTTTTCTATCATGCGAAGGGGAAATGGCAACCAAATAAAACACAGATCCGTAGCAGCTTAGCTCTAGTTATTTGGGGTGATCCAGGGTATTTTAGGGTAGCCTGTGAATCAGTGGCAAGATCTACAGCCCTTCCAGGAAGTAATCAGTACTACGTACATCGTTCTTTTGCAATTGCTTTAGGATGAGATGCCTGGAGTAGCAACGTGAATTAGGTTTACCAATTCACCACGGTGTATTAGCTTATGTATGATCAGCAACTAGATTTAGCAATTTATTAGTCAGTTCTCGTGGAACATCATTTTCTGTGGAACTAACAAGGCATTAACTACTAGCGTGGAGCGTTTAAAGAAGTTCAAAAAAACAAAAATCCGAACGTAAACTTCATGCTACTCCGTCCGATCCAAATTAGTTCGACTCAAATTTGTCAAGATATGGATGAATCATGTCTACGTACAATTGAATTTAGACAAACCTAAATCAACTAATTTAGGTCGGAGGGAGTATAACAAAGTATCAGTTCTGAATATGTGTCCTGTGCAAAAAAATAGAAATTGTTACATGTTGATGTGCTTTCCTATTCAAGCTGCACCTACTATATTTGTCTTAAACATGGTCATGATTTTGTGCTAAGTTTTGTATGATTACATGTTATACAATGATGTCTATGCATTTAGAATATAAGAAG | |||||||||
gi|240367601|gb|GR362703.1|GR362703 CCOY5186.g1 CCOY Avena barbata root, pooled from different levels of rain and nitrogen (L) A TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): GAGATGATTTCTCAGCGCTGCCCGGTTTGCTTGTTGATTGAGGCTGCATGCACAATGCTGCCTCTGTGCTGCTCATCGTTGATCAAAGAGAGGAAAGAAAAGGAGAAGAAACAAGAGTAGAGTACGTTTATAGGATCGAAAGATGACATATTGGTGCCTGTTGGAGCCATATGGGGTTGCCTGGATTTCTGTTTCATATGATGTGATTATAGCTGGTGGAAACAACCTGCGAGAGGATTAGGTTCTTCAGTTTTAGTGCTCTGAGGCCTCCCAAGAATTATTATACTCCCTCCGACCCATATTACTACTTGGATTTGTCAAAATTTGGATAAACCTATATACTAAATAGTGTCTAGATTCATCCAAATCTAGACAAATTTGAGTCAACTAATATGGGCCGGAGGGAGTATTAAAAGGCAAGAGCAGATATATATACGTGTGTGGTATCATTTTTCTATAGATCAAGTATTATGTTTGTGTAACTAGGTTTTTATGAAGTTGTGTAACTAGTTGAAAATCCTGCAGTTTCTTTGTGGTCTCCAGTCTCCTAGTTGTATTCATTGGTTCTTGGATGATTCAGTATGTTCATCTGCATGTTGCGAAATGTAGTAATTTGGATGAGCATGAATTGCTGAGTAATATGGGGTCTCGGTCTGTTGGATGTTTATGAATATCGAATGTAACCATAGAAAGCTAGCGGTTGCAAGTTGCAATATTC | |||||||||
gi|240347344|gb|GR348047.1|GR348047 CCOX3531.g1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) A TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): TCGCTGCTTGATTTTTGAGGTGCAAAGAAGTGCTAGGTCAGAGGCTAGAAAGGAGGAAGCACGCAACAGGAACTTGAGGAATTGAAACAAAGGGAAGAGAGTTTAGCTAACGATTTAGAAGATCTTAAACGGAAGCTGGATGAACTTGAGCGCCTCGCTAAAGGACGAGGCCTTTCTGGAATATTGAACTTTAAAGGTGTCAGTGGATCGGATGGTGGCAAGGCAGCAACACCTGCTTGATTTATCTATTCAAGTTTGGTCAGGAAAAACAGGATGTTGTGTTGTCACGAGTCTATGAGCATATCACCTTGACATTGGCTAACTGGTTTCCTAATTCTTCTGTCACACTTCTACTCCCTTCGTTCCAAAAATAAGTGACTTGGATTTGTGTAGATTCACATGTATCTACACACTAAAATGTGTCTGTGAATCTAGACAAATCAAAGTCACTTATTTGGGACAGAGGGAGTATGATTCTTTCGAATGTGACATCCATTCTTTTGGTGAATGTATCAATTTTTTTTTATGGTAGATCCAGTAGACATCATGAAATAATACAGTGTAACTGTGTCACGAAAAGGCCTGGTTACTTCTCGGTACTTGAAAAGTAGATGTAAAGATGGATGTATTCTTACTTTGGGCCTTTGGCTCGCTAGCACATCAGGTAGCCAAGTCTAAATGCTTCATTATATGTTGTGGACTATGATCTGAAGTAGTACTCCCTCCGATCCTAGACAAATCTGTGTCAATTAATTTGGATTGGAGGAAGTAATAATTAAATGATTTCCTTTATTCT | |||||||||
gi|240311552|gb|GR326707.1|GR326707 CCOS3123.g1 CCOS Avena barbata leaf, grown under high rainfall (H) Avena barbata cDNA clone TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): TGGCTGATCCGACGAGTTCGACATGACCGAGGCGTTTGGCATCACCTCGCGCCGGAAGGCCGGCTCATGTTGCGTCCCGTCCTGCGAGTGCCCGTGCCCATGCCCAAAGTCTAGGTGACGACTACACCATGGGTCCATGGCAGAACTGCACGTACGTGCGTGTACTGTACTACTCCCTCCGTTCATATTGTTTGTCGTTAAAATGGATGTATCTAGCACTAAAATAAGTCTAGATACATCCATTTTAGTGATAAGTATTATGGATTGGAGGGAGTAGTATAGTAGCCTAGGTTTGACCAAATATAAATAAGAAAATATCAATATCTATGATAGTAAATATTAAACAAATATATTATGAAAATATCTATGCTTATTACAACCATATTACTACATGACTTATATTAGGACTAGCTGCTGATTAGTAAATCAGTCTCTTTCAATCTTCCTATGTTATCATTAGCGACGATTGCTGCTCTAGTGCGTTGGTTCTTAGCACGATAATTTTACGTATGTCTACTATAACAAGCTCTACTATAAGCTTTGGCCGGCTCCGGTGTTGGAGGGACGAGGACGGCGACGCGCCTTTAGTTCGTGCTAATGTTTATAGTCATCGCTAGTCCATCAACCTATTTGTAATCTCTATATTACTTTTATGCCTCTTTGTACTACTGTTGATTATTTATTATTAATAGATCGGTGCAATTTCACGC | |||||||||
gi|240357968|gb|GR351629.1|GR351629 CCOX5384.g1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) A TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): AATAGCTGATCATACGTGTGGCACGTGTTTTGCATAGGTGTTGGTGTCCAACATAGTACACATGTTGTATTATTTCACGTGTGTATATGTTTGGAAGTATCTAAATCTGAATTTACGTGGAATATCCTACAGCCATGCTGAGTCAGAGTCTGTCGCAGCACCAGTGGAGGGAAATGACGTTCCAGTTTAATGGCGTATTTTTTCGCTTAATTGAGCAGTCTTTCATCTGCTTTGCATGCTAAGTTTACCACTAGAGCAGTAGATAAGAGGTGGCAGCACCTGCTGGCTGGTATATCCGGGAAGACAGACATGAAGCCGCCTGAGTTTGGGTAGTTTGCCACTAAGATAGTACTTGGATTTCTTCAGCTACTATAAAAGATTGGTTGTTAGCGTTTCTGGAATGCCTAGGTTATGTTTTATCTATTTTGGGACGAAGGGAGTATTCAAATTGATGGCAACTGCTCTTCTCGAGGAAAGCTGGTGAAGTCTCCCAGGGGTCAACTGAGTTGCACATGCCCTGATAGATTGTTAATGTTCGAGTCAGTGGACTGAGCTCTACTTGATGAAAGACTGCTGGTCCACTTGAAGTCCAAGAGTATCTCCGCCATCTTCTGCTGGTACTCAAGTTTACTCAGTGATCAATCTGTGGTTATATGCTTTAAATATGTACAGGTTCACTGGTGATTTATTTCAGCAAGCAAATTGGCGCTAATTTTCATAGGAAGTTTCTGGCCTTGTTTGATTT | |||||||||
gi|240364278|gb|GR358336.1|GR358336 CCOY2398.g1 CCOY Avena barbata root, pooled from different levels of rain and nitrogen (L) A TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): TGATGAAGTGGCATATGCAAATGTTCCTACAACTCATACGAGCTCCAGATGGGCAAACTATGAAGTTGGTGCAGATAGATTCAAGATTCTGACATTTTGTTCAATCCATATCTTTCTCAGACCATTCCTGGCGTTGATGGATTTGGAGATTCCACTTCAATTCGGGGACTTCCACGGATGGTCCTTGACAGTGTAATAGGTGTGATGTTGACATTCGCAAGGAGCTACTCAGCAGCATCTTGCTTTCTGGTGGCTCATCATCAATTCTGCAGTTAAAGGAGCGCCTAGAAAAAGAAGTAATGGAGGCGTCCCCTCAAAATGCTCGTGTAAAGGTTTTGGCAAGTGGAAATTCAGTGGAGAGGCGTTTCAGTGTTTGGATTGGAGGGAGCATTCTTGCATCTCTTGGGTCGTTCCAGCAAATGTGGTTCTCCAAGGCAGAGTATGAAGAGCATGGCGTTTCCTATATCCAAAGGAAATGCCCATGAAATGGTGGAACAAAGCTATGTGTTGCCGAAAGAATGTATGTGGGCGACATTTAGATGCAGGCGACCAAGGCCACCTCGTTATGTCGGCAGCTGTTATCTTGAGATATTTGTTCATGTCATGGCTAAAATTAGTTTTTAGGGCTGTGAGTGCAACTGACTCGGCTAGTACTTGTCATTAATGGTAGAAATGCAACGAGTTACTACTATTCTCCAGACTCGAGTGCATCCTGGAGTGGTACCTGAAGCTGTAACTGATCGACTATATCTAAGTTAAGTCATGTCAGACGTTTTATG | |||||||||
gi|240361149|gb|GR363226.1|GR363226 CCOY5463.b1 CCOY Avena barbata root, pooled from different levels of rain and nitrogen (L) A TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): AAGAAAAAAAAGGTCAAGGGTTCCCTTCCTAGGGACGGCGCAACCATCCGCTCCATCTTCTCCGCCGCCGATCCCATCTGCCTCTCCCGCAAGCCACAGACCGACCGCTATGAGTTTATTCAGCGGCGGTGAAGGGAGGAAGGCAGAGACTGAGCGGGTGGCCGGCCGGCCAAAGGGGAATCTCGCGGACTTCATCTTCAAGTTCTGCATGCGCATGAGGACGTTGATGCCTGTTGGAGCTACCTAGATGATGATGGGTGTTGGTCTTCTAGGTGCATTTATAGTCTTGTTTATAGCACCCATGGACCTTATGTTTAGTATATATGCAGCACTATCCATTTTTAGAATACTACCAAATTGTAGTGTGGAAGCATCAGGAATTTTGGGAAGGATTCTCGGGGGTAATCCAGTGAGATACTTGTGTTTGATACAATAACCGTTCCATAATAAGTGTCATCATTTTGAACTAACCTCAGTTCCATAATAAGTGTCATCATTTTGAACTAACCTCAGTTCAAAACTATGACACTTATTATGGATCGGAGGGAGTACTAAATTATGATGAAGCAGTTAGATTCCGA | |||||||||
gi|240371128|gb|GR360780.1|GR360780 CCOY4127.b1 CCOY Avena barbata root, pooled from different levels of rain and nitrogen (L) A TAATACTCCCTCCGACCCAAA EST sequence (targeted fragment marked with yellow): CCCTCGGCTCCGTCCATCAGTACTTCATCCGCATCAAGCATATGGGCGGCAACATTGATGAGGCCGCTATCTTTCAAGGCGTGAATTTTGCTCCCCTGGATTATAACGCTATTCGTGTAGGGATGGAAGTAGAACTATACTCCAATGGTCAGCTTGTTGCGAAAGCAAGAATTGAAACAAGGGGCCCGGTGATTTGTCAGGTTCGTGTGATTAATGTCTTTCAGAATACTAATGGCGTTCGTGAAGGCCAGTCCATTGGATGGGGACGTGAAAATATTGGGCCTAGTGCCGCCGCTCCAGGAGGTAATTGAGGTAATCTTTTGAAAATCTCTACTTACTCTCTTTTCTGTACTACTTTACATGTCAAATCAAGTACTCCCTCCCATCCATATTAGTTGACGTGGATCTGTCAAAATTTGGATGAACCTACATACTAAATAGTGTCTAGACTCATCTAAAACTAGACAAATCCAAGTCAACTAATATGGGTCGGAGGGAGTATATATTCCTAAAGTTTAAACTACGAATAATGTGCACACTTCATTGCATCAAGTCATCGTGTTGTCCCTCCCTCCTTAGTGGTGGTAGCTATGAATGATTGTAATTGGGTCGATGAACCCTTAGCTGCTTAGGTTTTGTCTCACCTGATGTAACCATTCTGTAACTCCGGAGCAGCAAGTTTCTTACGCACTCTTTTCCTTACCAGGTACCTAAGGA | |||||||||