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mature miRNA: TAATGCCCGTCACAGATGAGT
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88721095|gb|CI744394.1|CI744394 CI744394 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro 

TAATGCCCGTCACAGATGAGT
||| ||||||||||||| ||.
ATTTCGGGCAGTGTCTA-TCG

EST sequence (targeted fragment marked with yellow):
AGTAGTCATCTGTGACGGGCTCTAGTTTAGGCCCGATTGAGGTCAGTAGTAAGTTTAGGCCCGATTGAGATGTGTATCATCTGTGACGGGCTCTAGTTTAGGCCCGATAAAGGTTAGTAGTCATCTGTGACGGGCGCTAGTTGTGGCCTGATAGAGATAGGTCATCTGTGACGGGCTATAGTTTGACTGGTCGTCTGGGTCAAAGCTATCTGTGACGGGCTTTACTTAGGACCCGATTGAGATATATTCATTCGTGACGGCCGTTTGCCCGATTGAGATAACTCTTCACATCAGCGACTTCTAGCCTGTGACGGACGCTGTGCCAGATTGAGATGGGGCTTACCGCCCGATTGAGAT


gi|86892693|gb|CI312063.1|CI312063 CI312063 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone 

TAATGCCCGTCACAGATGAGT
 |||||||||||  |||||||
TTTACGGGCAGTCCCTACTCA

EST sequence (targeted fragment marked with yellow):
GCAGTGGGCATGGCTAGCAAAGGCCTGAGGCTAGCCAAAAAGACAAATTTTATTTTTTTTGGTTCTAAACTCATCCCTGACGGGCATTTAGCTAATGCCCGAAAGAGATAACTCATCCGTGACGGGCTATAGAGTCCTGCCCGTTAGAGATTAGTCATCCGTGACGGGCTTTTAGAATACACCCGATAGAGATAAGTCGTCCGAATTGGACTAGTTTGACTCAACACGTGGGGTCAAACCTATCGGTGACGGGCTCTGGCTAAATGCCCGATGGAGATGACTACTCATCCGTGACGGGCTTAGTGGTGTGCCCGATTGAGATTAGTCATCCGTGACGGACTCCTAACTACGCTGGTTTGACTGATCATACTCATCTGTGACGGGCTTTGTTTTTGGCCCGATTGAGATAACATCCATCCATGACGGGCTTTTGCCCGATTGAGATTTTTCCTCACATCAGTGACCTTTGCCCAGTGACGGGGGCCTTACCCGACAATGATGATGCTTTCAGCCCGTCATAGATAAAGCGATCCCGTTCTAGTGGGTAGCACCAGGTAGATGCGATCTTCGACGACTCCCGGTGATCTTCGGGCACACTCCGGCTGGGGTAGCCATCACGATGGCCTTCT


gi|88288714|gb|CI663503.1|CI663503 CI663503 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza 

TAATGCCCGTCACAGATGAGT
||| ||||||||| |||||||
ATTTCGGGCAGTGGCTACTCA

EST sequence (targeted fragment marked with yellow):
TTTGTTGTTGATGACTTTTTCAATTGAAATCATTTAGTATTTGAAAATGTTGTCTGAAGGTGTCATATTTTCCAATTCAAATTCAAACTGTTTAAAAAAATGTTATATAGAAAAATGACCAAACTAAAAGTTGTAAATCTTGATAAGTTATATAACTTTGTTGTTGACATTTTTTCCATTTGAAATCATTTACTACCCGTAAAATTATTTTGACTCATAAAATAAATTATTATACTGCACTTAATTATTTTGCTATAGTTAAACTTACAATATTAAACATTTCATATGAAAAATGGAAAAATACTCATCGGTGACGGGCTTTAATTAATGCCCGATAGAGATTAAGTTATCTCAATCGGGCATTAGTATATAGCCCTTCACTGATGATGGTCATCTGTGACGGGCCC


gi|86478156|gb|CI120789.1|CI120789 CI120789 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo 

TAATGCCCGTCACAGATGAGT
||| ||||||||| ||||| |
ATTTCGGGCAGTGGCTACTGA

EST sequence (targeted fragment marked with yellow):
TTTGACTCATAAAATGAATTATTATACTGCACTTAATTATTTTGCTATAGTCAACTTACAAATATAAACATTTCATATGAAAAATGGAAAAATAGTCATCGGTGACGGGCTTTAGTTAATGCCCGATAGAGATTAAGTATATAGCCCGTCACTGATGAGTCATCTCAAACGGGCCTAAAATTGGTGCCCGTCACAGATGGACCCGTTTGAGATATGGAATGTTATCTTAATCGGGCCTAAACTACGGCCCGTCACTGATAGGTGTCATCCGTGATGGGCTTAAGTTTTATGCCCATCTAACATGTCTGTGCGACCATATCTCAATCGGGCACTTTTCGGCCCGATTGAGATGACTTCCTTGTGACGGCCCGCTATTTCTAAGCATATTAGAGCCCGTCACAGATAGAAGGATCTGTACTAGTGGTGCCCTTCCACCGCCGCTGGCACCGCAGTCCACCGCTGTGACCGCCGGAGCCGAGGTCTTCCCCATCCGCCGCCGCTGCAGTCAAGCGCAGACCCCGACGGAGCCGAGGTCTTCCACATCCGCCGCAGTCCAGCGCTGCCCCCTGATAGAGCCGAGGTCATCCCCAGCCGCCACCGCACTCCAAAAAAGGTGATTTTTCACGTGCAAAGCACGTCAATATATATTGAGTGAAGTACATTTTTTTTGATAACTGGCAAATTGAATCACCTT


gi|88340587|gb|CI647541.1|CI647541 CI647541 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza 

TAATGCCCGTCACAGATGAGT
||| ||||||||| |||||||
ATTTCGGGCAGTGGCTACTCA

EST sequence (targeted fragment marked with yellow):
TTTGTTGTTGATGACTTTTTCAATTGAAATCATTTAGTATTTGAAAATGTTGTCTGAAGGTGTCATATTTTCCAATTCAAATTCAAACTGTTTAAAAAAATGTTATATAGAAAAATGACCAAACTAAAAGTTGTAAATCTTGATAAGTTATATAACTTTGTTGTTGACATTTTTTCCATTTGAAATCATTTACTACCCGTAAAATTATTTTGACTCATAAAATAAATTATTATACTGCACTTAATTATTTTGCTATAGTTAAACTTANCAATATAAACATTTCATATGAAAAATGGAAAAATACTCATCGGTGACGGGCTTTAATTAATGCCCGATAGAGATTAAGTTATCTCAATCGGGCATTAGTAT


gi|86892693|gb|CI312063.1|CI312063 CI312063 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone 

TAATGCCCGTCACAGATGAGT
.|| |||||||||||||||||
GTTTCGGGCAGTGTCTACTCA

EST sequence (targeted fragment marked with yellow):
GCAGTGGGCATGGCTAGCAAAGGCCTGAGGCTAGCCAAAAAGACAAATTTTATTTTTTTTGGTTCTAAACTCATCCCTGACGGGCATTTAGCTAATGCCCGAAAGAGATAACTCATCCGTGACGGGCTATAGAGTCCTGCCCGTTAGAGATTAGTCATCCGTGACGGGCTTTTAGAATACACCCGATAGAGATAAGTCGTCCGAATTGGACTAGTTTGACTCAACACGTGGGGTCAAACCTATCGGTGACGGGCTCTGGCTAAATGCCCGATGGAGATGACTACTCATCCGTGACGGGCTTAGTGGTGTGCCCGATTGAGATTAGTCATCCGTGACGGACTCCTAACTACGCTGGTTTGACTGATCATACTCATCTGTGACGGGCTTTGTTTTTGGCCCGATTGAGATAACATCCATCCATGACGGGCTTTTGCCCGATTGAGATTTTTCCTCACATCAGTGACCTTTGCCCAGTGACGGGGGCCTTACCCGACAATGATGATGCTTTCAGCCCGTCATAGATAAAGCGATCCCGTTCTAGTGGGTAGCACCAGGTAGATGCGATCTTCGACGACTCCCGGTGATCTTCGGGCACACTCCGGCTGGGGTAGCCATCACGATGGCCTTCT