| mature miRNA: TACAATTCCTTAGGTGCTTTT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|20275726|gb|BQ139600.1|BQ139600 NF022A12PH1F1088 Phoma-infected Medicago truncatula cDNA clone NF022A12PH 5', mRNA sequence TACAATTCCTTAGGTGCTTTT EST sequence (targeted fragment marked with yellow): GTACAATTCCCTTTTCGTATGGTTCTTAACTAAAAATACATATTTTTTGATATAACAAACTTCGAGAAAATTATGGATTTGAGGAAATCATGGTGAATTTAGTTAAGAACCATACGAAAAGCATCTAACGAATTGTACCTAAGTTTTCTCCTTAAAAAAAACCAGAAAATAAGAGAGATACATGAGATGTAGAGAGAGGCGGCGGCCATAGGAATTACATAGGGCAATCACACGGGCAATCACCATCGGCCATAAGGATAAAGTTTCAACTATGGTGGCACAAATCGGGTGGATAGGGATGATTCACAAATCGGGCGGATAGGGATGATTGGACTGTGGTTGGCTCAAGATGTCGGAAAGCGATGAACTGTGATTGGACTGATGTTCGAAGAGATGAACGGAATTCGCATGTGCACCAAATCGTACGCAAATAATAAAAAGGAAGAAGGTTATTGGGTTGGATGATCTTCTTAATGAACACTACAAAGAACAGGAGAAGCTTGCAGAGAAGCAGAAGAAGCAGGCAAAGAAAAAGGCTAAGGCAAATGAAAAGAAGAAATACGATGATGAAGATCGTAAGGAAGCTCATTTGAATAGGCTAGTTGAGAAATGTCACAATCAGTTGAAAGCCTTTGGAGAANAAAATGAAATTCCAGTTTGGGGGGTAAAAGTTTTTNGGNGAACAAAAACCCCTTTCCCCGTTTG | |||||||||
gi|157984807|gb|EX533079.1|EX533079 MTGland_B045_2007-06-07/MTGlandB045_A08_032_1 Medicago truncatula A17 glandular trichome Med TACAATTCCTTAGGTGCTTTT EST sequence (targeted fragment marked with yellow): GNNNTTACGGCCGGGGCGTTGACCGAGTCAACAATGAACTGGGGGTCCAAAGCTGCCAAAGAATCAAAAGATAGGGGGCTGTTTTGTATTTAAATTAGTTAGGGGTCCATAAACNCAACTTTTGGAAAGATAGGAGTTCAAAAGTGCAATTAATCCTTTAATTTAGGAGAAAACTTAGGTACAATTACGCAGGTGTTTTTCGTATGGTTCTTAACTAAATTCACCATGATTTCCTCAAATCCATAATTTTCTCAAAGTTTGTTATATCCAAAAAATATGTATTTTTAGCTAAGAACCATACGAAAAGTACTTAAGGAATTGTACCTAAGTTTTCTCCTTTAATTTATTGTCTTTTGACTGAAATTTACAAGTGTGTTATTTATCGACAAAACTAGTATATTAAATAAAAAGAATACATATATGGTCAAATGATATTTATTGTCAATATAGTAGTCAAAATGGTTTAAAGTGAAGGAATATTTTTACAATACTTCAAATGATAAATTAAAATTAATGTATTTCATAGTTGAAATAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACNNGT | |||||||||
gi|9681232|gb|AL381481.1|AL381481 MtBC01C06R2 MtBC Medicago truncatula cDNA clone MtBC01C06 T7, mRNA sequence TACAATTCCTTAGGTGCTTTT EST sequence (targeted fragment marked with yellow): TCGTAAGTTAACGGAAGCCGCTTTTAATCGTGGTAGTGCAGATAACATTACTTGTATTGTGGTACGATTCAATCATGAAAAAAGACACGCAGCTAATCCTGATAAAGCTAGTACAGCTAGCAGTCAGCATGAGCAGAGACAATGAAAAGCACACGAACATGTGCTTGATTTATTGAGGGAAGAGTCTGCACATGCATGATGGCTGACCTGTGCATGTCAAACAACTGATAATTTGTTTATTCATCCGTTTTGTAATGTAAGTCACTCTTGTATTGTGATCATTTATGGATTCATGCTCTTTCTAAAACTTATTATGGTGTTTGCTATAAATAAGTTTATGGCTTGTAGAGGCTCCAGTTTGGTATTTTTGTTTTGTATCTAATAAATTCAACGTGCATCTTTTTGCGTTATTCATCTTTTGTTCTTGTTTACGCAATTGAATTCAGCAAAATCACATAAAGAATTGTACATGTACGAGAAAAGAAAGAACAAAAAATACAAAATAAAAATAAATAAAATATTTATAAAAAAAAAAAAAAAAAAACTGAGG | |||||||||
gi|22085002|gb|AJ504074.1|AJ504074 AJ504074 MTAMP Medicago truncatula cDNA clone mtgmadc120042d02, mRNA sequence TACAATTCCTTAGGTGCTTTT EST sequence (targeted fragment marked with yellow): GGAGAACACCAAATCTCACTCCTGTAGCCGCTGTTGCGTTTCTCTTCAATCGAATCAACTTCGATTCTCACTCAATTCATCTCTCCGGTTATCTTCACCGGAGTTCCTCGCCGGCTGCCACAATCAGCTAGAAACACCGTCCACAAGTTGGTTATCAGGAAAACTCTTTTTTCTCACGGTTTTTTTTCTTGATCAAGTGACGACAATGGAGGACGATTGGGAGGAAGAGCAATTGGCACCCATTGATCTTAAGTTACATGAGCCACCTAAACTTAAATGGGAAGATGAAGACGTGGATGAAGATGATGTGAAGGACTCATGGGAAGAAGAAGACGAGCCCGCTCCTGCACCTGCAGCACCTGTAGTAAAAACTACTGAGAAGGCTCCTAAAAAGCCTTCTGAAAAAGCTACTGAAAAGAAGGGAAAGAAAGTAGAACAAGAAAAAGAAAAGGAAGAACCAACTGGATCCTCTGGCTGAAAAACTTCGCCAACAAAGACTAGTTGAAGAAGCAGATTACAAGGCCACTTAAGGAATTGTTTGGTGGGG | |||||||||
gi|20283149|gb|BQ146090.1|BQ146090 NF010C05GS1F1037 Germinating Seed Medicago truncatula cDNA clone NF010C05GS 5', mRNA sequence TACAATTCCTTAGGTGCTTTT EST sequence (targeted fragment marked with yellow): GCACGAGGATCATGGTAAATTTAGTTAAGAACCATGTGACAAACACCTAAGGAATTGTACGTAAGTTTTTTCCTAAACTAAAAGGTAGGCATTAACTTCTCAAATATAATAGTAGCAATTTATACTCAAAAGTATAACTGCCTTCTTAATTATTTTCGGTTGCAAAATAAGACATGTAACTAAATTACCTTCAAATGATAGTGTAAAGGCTTANATTTCCCTCAAAAAAAAAAAAAAAAAACTCGA | |||||||||
gi|57561087|gb|CX537231.1|CX537231 s13dNF10C05GS037_457668 Germinating Seed Medicago truncatula cDNA, mRNA sequence TACAATTCCTTAGGTGCTTTT EST sequence (targeted fragment marked with yellow): GATCATGGTAAATTTAGTTAAGAACCATGTGACAAACACCTAAGGAATTGTACTAAGTTTTTTCCTAAACTAAAAGGTAGGCATTAACTTCTCAAATATAATAGTAGCAATTTATACTCAAAAGTATAACTGCCTTCTTAATTATTTTCGGTTGCAAAATAAGACATGTAACTAAATTACCTTCAAATGATAGTGTAAAGGCTTAGATTTCCCTC | |||||||||
gi|148767092|gb|ES613786.1|ES613786 MTGland_B014_2007-05-07/MTGlandB014_F05_019_1 Medicago truncatula A17 glandular trichome Med TACAATTCCTTAGGTGCTTTT EST sequence (targeted fragment marked with yellow): GGCTCCACTTTATTGCTCACATTATTCNTGAAATAAAATAANTTTTTTTTANAGGAAAAATAAGTTTGTTATTGTACAAAAAACTGAAGTTGCTAAAAAAAAGTTGAAATCATGAAAGAAAAAGTGATCCAAGTCACGGACATAATTTTGCATTGACTTCATTTGACNANAAATACTTGCTTGAAGACAAACCTAAATCTATAAGTTTAGGCACACTCACACAATTGATGTGTTTTTAAAGGTAAAAATAGTTTAGTGATATTGAATAATGTGACTAATTTAATTATCAATTAAATTTTTTTATNGTTGTGTGTGTTCAAATAATTTTATTTGTATTTGTATTTATGCAANACTATCTCTCATCTAACTATTTTGTTGTGGACTTGAAAAAACGAATTGGTAACGTAAATAANTTTATTTTATTTTAGGTGTGATAGCCGTTACCAATAAAAAAAGGAAAAAACTTATATATATACAATTTCTTANGTATTTTTCGTATGATTCTTAACTAAATTTATCGTGATTTCATCAAATTTATGATTTTATCAAAGTTTGTTGTATCCAACATAGGTGTATTTTTAGTCAANAACCATACAAAAAATACCTAAAGAATTGTATCTAAATTTTACCGTATAAAATTANGTATTTTTATCNNTGANTTGTTANAANCAAAAACATGTACGTGCGTCTAACTTGNTATATCATGGANNAAATCTACAATTTTATANGAATAATGCTACCNAATTATATACTTTTTNAACTCNCTCCTTTTTGACC | |||||||||