miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TACCAACCGGGACTAAAGAGG
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88717608|gb|CI741118.1|CI741118 CI741118 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
.||||||||||||||||| .
GTGGTTGGCCCTGATTTCAAT

EST sequence (targeted fragment marked with yellow):
TTACTCCCGGTTGGTTACTAAAGATCCTAACTTTAGTCCCGGTTGGTGTGATCCCCGGGATCTTTAGTCCCGGTTGGTAACATCTTTAGTCCCGGTTGGTAATACCAACTGGGACTAAAAATCCCCCTTTATATATGTCTTCTTCCTTCTCCAGCCCGAGCAAGCTTTAAAATTTCTCAAAGAAAGAGGGGAGGTCATGCCAAAATTTCTTGTGAAATTTTTTTAGTGATTATATACAAATCGGAGGTGTCTAAAAGGTTAGTAACTTCATCCTCCAATATTTTTTGTTGTTATATTACTTTTGGAGCTATGTTTCAGACATTTCTTTTGTCTCCAAAACTTTGGTGTAAGTT



gi|88724251|gb|CI747510.1|CI747510 CI747510 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
| |||||||||||||||||
ACGGTTGGCCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
TAAATTATTTTATACCAAATGCTTACAAGAGACAGCAAAAACAGTTTAAATCTATATTTCTAATCACTGGTGGAGAAACCAATCTTTGGTCGGTCGGCCGAAATCCACAATAGTCCCGATTCCACTAAAAACCGGGACTAAAGATGATCTTTAGTCCTGGTTGGTGGCTACAGTGGGCATATTTGATCTTTAGTCCCGGTTGGCACCAACCGGGACTAAAGATGATCTTTAGTCTCGGTTCTAAACCTGTTAGTCCTTGTCAGGCCCCCAACTTTACTCCCGGTTGGTGTTATAAACCTGGACTAAAGATCTAGAAGATTTTTAATCCCAGTTGGTATTACCAACCGGGACTAAAATTCAANGCTTA



gi|88483895|gb|CI421166.1|CI421166 CI421166 Oryza sativa (japonica cultivar-group) 4th leaf leaf 1mM ACC(1-aminocyclopropane-1-c

TACCAACCGGGACTAAAGAGG
|||||| ||||||||||||
ATGGTTAGCCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
GTTGGTAAGATCATTTTTTTTGTCCCGCTTCAAAAAGTTGATAGGCCGTGTCAGGCCCCAAGGATCTTTAGTCCCGATTGGTATTATAAACCGGAATTAAATATCATCACTTTAGTCCCGATTGGTAGCACCAACTGGGACTACAAATCCGAAAAAACACGCCGGGTCGCACGTGTGCGCCTCCCCGCCCTTATCTCCTCGATATCTCCACGCCTTTTTAAGTCATTTGCGTCTCCTCCTCTCCCTCCAGATGCGTCCTCCCCTACCCTTCCTCCTCCTCCTCCCCCTCCCCTCCCCTCTCTGTCGGCGACGGCGTGACCAGGAGGGGGAGACGCGGCGCCAGCTGCGGTGGGGGAGGGGGCAGCGGCCCCGTCGGCGAGGTCTGTGAAAATTAATAGGTATGTGGAAAAAAAAA



gi|58597243|gb|CK007771.1|CK007771 27941rsicef_4037.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G

TACCAACCGGGACTAAAGAGG
.||||||||||||||||| ||
GTGGTTGGCCCTGATTTCCCC

EST sequence (targeted fragment marked with yellow):
GCACGAGGCGGGAGGCGATGCGGCCACACTGAGAGCCATCGCAGCCGTGAAGATGGCTGGGAAGGTGTGGAGCAAAGTGCCGCTGCATTGGTCTGGGGCTACGAGACGGGATGAAGGAATGGATATTGCGACCAATGGAGGTGAAAGCATTCTACAGTCCACCGTGAGCGTGAGTTGAAATTATCTCGCCGCAGGTACGAGAGCGTCGGGTAGTATTCCACCGCCGGCAACGGCCGCTTCGCTAGGGGAACATAGCCGGAGGTTTTAGCACAACCGCCGGACAAGTGGCGACATTCGTGTTCTTCCTCGCCCATATGCTGCACTGATTAAAGAAGAACACCGACGAGCTGTTCTTCATTTCTTCATCCCGTCGATGTCCGGGATGCGGAACAGCTCGCCGCTGATAGTGTTGCAGATGAAGCGCTTGCACTGGTGGAGAAACCTTTTGTAGTCCCGGTTCGTAACCCCCTTTAGTCCCGGTTGGTGTTACCAACCGGAACTAAAGATCGATCTGACCTTTTTTTTTTCATGGCCCTGTTGCTGCATGGTTTATATATATATATATATATATATATATA



gi|163928936|gb|EG709764.1|EG709764 Os5MPREST1446 Rice young panicles Oryza sativa Japonica Group cDNA clone 5MPR-F1B11SA, mRNA

TACCAACCGGGACTAAAGAGG
| |||||||||||||||.| |
AAGGTTGGCCCTGATTTTTAC

EST sequence (targeted fragment marked with yellow):
CGGCCGGGGGCGGATGCCTCCCGCAGTTCCAAGCGGCCGCGCCGTCGTCGCCTCATCGTCCGCCGCGGCGGCGGAGATGGGGAATTTCTGAGCTAGGGTTAAGTCTAGTGAATCACCCACATATGCCCACATTAACACAAAACGAGCCCAATGGGCCTACGATTCAGTGGAGAGTGCCCCAGCAGCGAGTGCCCTGTCTTCGCCCATCGCCTGACGCCGCACTTCGCCTCTGCGCCTGACTGCCGTCAGCGGCCTGCCGGAGTTGGAGGTGGAGGGTGTTGGTACGAGCGGGCGGCGCCATACCTCGCCCTACCGAGTCCTCTGCAACTGTTCATAACCCTTTGTAGTCCCAGTTTTTCAACCGGGACTACGAATCCGGGACTAAAGATCGTTATCTTTAGTCCCGGGTGAAATAACCGGGAGTAAAAATCCATTTTTAGTCCCAATTGGTGTTATCAATCGAGACTAAAGATAGAGCATTTTTAGTCCCGGTTGGAAATAGAGTTAGGCTAGCTAGATACGG



gi|88730993|gb|CI754606.1|CI754606 CI754606 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
.||||||||||||||||||
GTGGTTGGCCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTCCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGGTCGACCGACCAA



gi|88694693|gb|CI738731.1|CI738731 CI738731 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
|||||||||||||||||||
ATGGTTGGCCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
GTTAAAAAGGGTAACGGACATATTTGATCTTTACTCGGGCATATTTGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATCATCTTTAGCCCCGGTTTTTATTGCAACCAGGACTATTGTGGAATTCGGCCGACCGACGAAAGATGGTTTCTCCACCAGTGGTTATGATTCTTCTGTTTGGAAAGAAAATATAAAAAAGATTATACGAAGGTTCAAAAAAAACTCGTTATTAATCCGATGCTAGATAAACCTTAGGTCAGTGTCACGTATACGAAGAGGGTGAAATGCGATGAGCCTCATCAATTTTATGCCTACAAGAATAATGCATGT



gi|88483895|gb|CI421166.1|CI421166 CI421166 Oryza sativa (japonica cultivar-group) 4th leaf leaf 1mM ACC(1-aminocyclopropane-1-c

TACCAACCGGGACTAAAGAGG
|||||| ||||||||||| |.
ATGGTTAGCCCTGATTTCACT

EST sequence (targeted fragment marked with yellow):
GTTGGTAAGATCATTTTTTTTGTCCCGCTTCAAAAAGTTGATAGGCCGTGTCAGGCCCCAAGGATCTTTAGTCCCGATTGGTATTATAAACCGGAATTAAATATCATCACTTTAGTCCCGATTGGTAGCACCAACTGGGACTACAAATCCGAAAAAACACGCCGGGTCGCACGTGTGCGCCTCCCCGCCCTTATCTCCTCGATATCTCCACGCCTTTTTAAGTCATTTGCGTCTCCTCCTCTCCCTCCAGATGCGTCCTCCCCTACCCTTCCTCCTCCTCCTCCCCCTCCCCTCCCCTCTCTGTCGGCGACGGCGTGACCAGGAGGGGGAGACGCGGCGCCAGCTGCGGTGGGGGAGGGGGCAGCGGCCCCGTCGGCGAGGTCTGTGAAAATTAATAGGTATGTGGAAAAAAAAA



gi|86897050|gb|CI317464.1|CI317464 CI317464 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TACCAACCGGGACTAAAGAGG
.|||||||.||||||||||||
GTGGTTGGTCCTGATTTCTCC

EST sequence (targeted fragment marked with yellow):
ATATATTTTGTGATTCACTAATATGTATAATTTTGTGATGGATTGTATGGGTCTGAGATGTATAGTCTGTGATGTATTTGATTTGTGTGTAATTTTTTTAGGATTTGTGATGTATTTGATTTGTGTATGTTAGTAACTTTAAGATTTGTGATGTGGATTGGGATGTTACTTTGATTTGGGGATTTGGGGTTTGATTTGGGATGTGAATGCCACCCGATTCGGGAGAAAATAAAAAAGAAACAAGAAAAAAGAAAAGGGACCATCTAGACTGCCGCTATCCCTCTTTAGTCCTGGTTGGTGTAAAGAACTTTCTCTTTAATCCCGGTTTTTGCTACCAACCGGGACTAAAGATTTAGTCCGGTTATTTCAACCGGGACTAAAGATGGGCATCTTTGTCCCGGATTCCTACTCCTGGTTGGAAATCCAGGACTAAGGGGGTTACAACTGGGAGTAAACAAGGTTTCTCCACAGTGACTGTGCTCTCACACAGTGCATTCTACAGCTGAAATAGTCTCA



gi|86505751|gb|CI148384.1|CI148384 CI148384 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa

TACCAACCGGGACTAAAGAGG
.|||||||.||||||||.||.
GTGGTTGGTCCTGATTTTTCT

EST sequence (targeted fragment marked with yellow):
AATTGTGATGATTCACTGAGATGTATTTATCCGAGAAGTTACAAATTTGTGATTCATTGTTTGGATTTGTGATGTATTTGAGTAATTTCTTAGGATATTGTGATGTATTTGATTTGTGTGTATAAGTAACTTTATGATTTGTGAGGTGGATTTGGTGTTGTGAATTTGGGATGTTAGTTAGATTTGGGGATTTGCCTACTTGATTCGGGAGAAAATAAAAAAAAAGAAAAAGAAAAAGGGACCATCTGCACTACCGCTATTGTCTGTTTAGTCCCGGGTTGATCCCTTCTTTTTAGTCCTGGTTGGTGGCTAAGGATACATCTTTAGTCCCGGTTAGTCCCGGATCCTTACTCCCGGTTGGAAAACCGGGATTAAATGGATATCCAAGCGGGAGTAAAGATGGTTTCTCCACGAGTGTAGGGTGATTTGTGAAACCAGCTAATTATAATTTAAATCGATAAATAAAAGAATTAGTGATGATTAGCGCTTGGGTGGGAGGCGGGAGGAGTGGGTGGAGGTG



gi|88729868|gb|CI753089.1|CI753089 CI753089 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
|||||||||||||||||||
ATGGTTGGCCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
TTAGTCCCGGTTGGTTACTAAAGATCCTAACTTTACTCCCGGTTGGTGTGATCCCCGGGATCTTTAGTCCCGGTTGGTAACATCTTTAGTCCCGGTTGGTAATACCAACTGGGACTAAAAATCCCCCTTTATATATGTCTTCTTCCTTCTCCAGCCCGAGCAAGCTTTAAAATTTCTCAAAGAAAGAGGGGAGGTCATGCCAAAATTTCTTGTGAAATTTTTCTAGTGATTATATACAAATCGGAGGTGTCTAAAAGGTTAGTAACTTCATCCTCCAATATTTTTTGTCGTTATATTACTTTTGGAGCTATGTTTCAGACATTTTTTTTGTCTCCAAAACTTTGGTGTAAGTTGATGAGAGAGAAAATTCGTGTGGGGAAGAAG



gi|66926195|gb|CX113043.1|CX113043 EI079K11 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

TACCAACCGGGACTAAAGAGG
||||||| |||| .|||.|||
ATGGTTGCCCCTTGTTTTTCC

EST sequence (targeted fragment marked with yellow):
CCCCTGCGGTACGGTCGGAATTCTCGGGTCGACCACGCGTCGCCACGCGTTCGCGGACGCGTTGGCGGGCGCGTTGGAAAAGACATTCCTACCGCCGCCTGCATTGGCCTCGTTAGAACGATGGCCGCGTTCTGCGCTGCGCCAGACCACCGATGTTTCCTCGTGCACCGCCTCCTCGCCGTGTGATGAGCTCTGTCCGCCGACGTTTGCGACTCCTGGTGGCCGCTATCACCAGTGCGCCGGCACCAGTCAGATGAGCGCAGCCCGCAGAGCTATCTGAGTATGGACTCTGACGCGTCCTCAAGTTACCTGGTGCCCGCTTCTCGCGAGGCAAGACAGCCATCGTTACCTAGACCGTGGATGAGTTCCCGAGGGAGAGCTACCGGAGTGTGTGCACAACGGTCGTGGTGCCATAATCTGCGCACGCACTCCTGGTATCACAGATTCTGCTGATGGCAAGCAAGGGAAGCGTAGAGATTGTTGAGTACCACCTTCGTCGTGNTGTGTGCCGTAGTGCATAGGCGTGTGCAGTCTTTGGTGCCATGCNGTTCTTATCTCCTGCGGAGNAATCACTTGATCGCTAAGGAATACGGGAGTGGTAGAGAGGTNACGGGCGGGGTAGAGCAGAGCTGCTTGGCTATCAAACGAGTGCAGAGCCGACGTCGACGATTCCTATCTTCACAGGAGAGTGGAGGTGCCTCCTGAGCTTACCGTNGTGGTGATAGCGCTCCTAAGCCATGCGNTGCCAGCGTCGCCGGGGAGCGCATTTCCTCTGGNCANTCTTGGGCGGCCGGATCCTACGGATGGGCTCGGCTCAGTAGGCGGATTACGGACGGCCGTGGCTACCAGCCGATCGGCGTTGCCTAGGCCCGGGTTCGAGCGGATGGGCCCTTGGCCGGACGTTGTTTCCCAGTGGTTGGCGCCCTTTTTGTTCCCCGTTGGTACCTTTGCTTAGGGAACCTTTTGGCCTTTTGCCTGTGCCTCCTGGGGGG



gi|88255103|gb|CI353927.1|CI353927 CI353927 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone

TACCAACCGGGACTAAAGAGG
.|||||||.||||||||.||.
GTGGTTGGTCCTGATTTTTCT

EST sequence (targeted fragment marked with yellow):
GCACTACCGCTATTGTCTGTTTAGTCCCGGTTTGATCCCTTCTTTTTAGTCCTGGTTGGTGGCTAAGGATACATCTTTAGTCCCGGTTAGTCCCGGATCCTTACTCCCGGTTGGAAAACCGGGATTAAATGGATATCCAACCGGGAGTAAAGATGGTTTCTCCACGAGTGTAGGGTGATTTGTGAAACCAGCTAATTATAATTTAAATCGATAAATAAAAGAATTATTGATGATTAGCGCTTGGGTGGGAGGCGGGAGGAGT



gi|66929560|gb|CX116408.1|CX116408 EI104D17 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

TACCAACCGGGACTAAAGAGG
||| ||||||||||| |.| |
ATGCTTGGCCCTGATGTTTGC

EST sequence (targeted fragment marked with yellow):
AAACAACTGTCTCAAAATCAGTTAATTAGTAGCTTAGATAGCAAAGATCATCGGAGGATCGGCGATGGCGGCGGCGCTCAGGACCACCGGCGGCCGGCGGCTGGCGGCGGTGCTCGTCATGATGCTGTTCGTCTTGGCGGCAGCGCTGCTGGAGGCGCCAGCGATGGCCTCCGCCGCGAGGGTGTTGCTTCAAAGTGGACAGCTTCCGACTCCGTATCCGACCTGCAATCCAGGCCAATATCCATGCCCATCGCGTACTACTGTGCCATGATTCACTGGTGGAGAAATCGTTTGTAGTCCCGGTTCGTAATCCCCCTTTAGTCCCGGTTGTCTAATCGGGACTACGAATCCGAGACTAAAAATAGCGATTTTTAGTCCCGTGTGAAATAACCGGGACTAAAGATCGATTTTTAGTCCCGGTTGGTAACACGAACCGGGACTAAAGATCGGTCAGCCACGTGGCTGGCTGATCCATCTTTAGTCTCGGTTGGTGTTACCAACGGGACTAAAGATCTATGTACCATTTTTTTTTATTTGCATTGCCATGTTTGCTGCATGGTTGATTATACACACCATATATATATATATATATATATATATATATATATATATATATATATATATATACATACATATATACATATATACCTATATATATATACCTATATATATGCGCATGTTATATGTCACACAACAATTTACCCGCTTTTCATGTTAAAGGCTCAACTTAATGACACATTTGTTGCCAAATATTAAACCAAGAGAAGAGCCCAATAAAAGAATTATAACGCACATAACAAACGAGACCACATGGAGGCGAAAAAGAACTAAGAGACTG



gi|29668043|gb|CB664318.1|CB664318 OSJNEd09P11.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd09P11 3', mRNA sequence

TACCAACCGGGACTAAAGAGG
||||||||||||||| |.| .
ATGGTTGGCCCTGATCTTTAT

EST sequence (targeted fragment marked with yellow):
ATAGTTTTCTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGTGTTAAAAGATCTTTATTACAGCAATCGAGACTAAAGATCTATTTCTAGTCCCGGTTGGTAACATCAACCGAAACAAAAGATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTGGCCTTATCTCTTCCTCTCTAACCTTATCTGTTCCTCTTCCTTCTCTCCTTTTAACTCCTCTCCTCCTTTCCCTCCCCCATCATCCCCACTATGATGGATGAGCCGGGCGGCCGGGCAGCGCGGAGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCAGGCTTTTTTTTCTTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGTGATGTGAATATGTGATGTATTGTGATGAATTTTGTAGAAGTTGTGATGTAATTTTTTTTAAGATTTTGTGATGTATTTGG



gi|89161954|gb|CI102302.1|CI102302 CI102302 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativa

TACCAACCGGGACTAAAGAGG
.|||||||.||||||||.||.
GTGGTTGGTCCTGATTTTTCT

EST sequence (targeted fragment marked with yellow):
TTTCCCGGTTGATCCCTTCTTTTTAGTCCTGGTTGGTGGCTAAGGATACATCTTTAGTCCCGGTTAGTCCCGGATCCTTACTCCCGGTTGGAAAACCGGGATTAAATGGATATCCAACCGGGAGTAAAGATGGTTTCTCCACGAGTGTAGGGTGATTTGTGAAACCAGCTAATTATAATTTAAATCGATNAATAAAAGAATTAGTGATGATTAGCGCTTGGGTGGGAGGCGGGAGGAGTGGGTGGAGGTGGAGGTGGTGGAGTAGTCGTCGGTGTAGTCGCCGCTGTCGAAGGCCACCTGCCGATGCCGCGAGATCTCCGATGAGGCGGAGAAGTCGTCGTCGTGGTGGTGGTCCAGCGAGAGCGAGGCGTCCCCCTCCAGCGCCCTCACGATCTGGCTCATCTTGGGCCGCTGCCGCGCCGAGTGCCGGATGCTCGCCGCCGCGCACGCCGCCATCCTCTCCACCTCCACCGCCGAGTACTCCCCGCCCAGCCGCGAGTCCACCAGCTCCCGGAT



gi|117252131|gb|CT844316.1|CT844316 CT844316 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TACCAACCGGGACTAAAGAGG
||| |||||||||||||.||
ATGTTTGGCCCTGATTTTTCG

EST sequence (targeted fragment marked with yellow):
TTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAACATTTAACCGGGTAAGCTTGCAAAAGGTTTCTGCTTACACGGGTGGAGAAGTGCTTTTTAGTCCCGGTTTGTAACCCCCCTTTAATCTTGGTTGTCCAACCGGGACTACGAATCCGGGACTAAAAATAGCGATCTTTAGTCCCGTTTGGAGTTACCAACCGGGACTAAAGAGGGAATAACAGCAGTACAGATGGTCCTCTTTCCTTTTTTTTTCTTTTTTATTTTCTCCCGAATCAAGTGGCATGCATATCCCTAAATCCCAAATCAAATTAACATCCCAAATCCACATCACAAATATTTAAGTTACTTATACACATAAATCAAATACATCGCAAATCCTAAAAAAAAATTACACAAATCAAATTACATCACAAGTTCTACAAAATTCATCGCAAATACATCACAAGTTCACATCGCACACAAATCAAATACATCACAGAATCATGCAATAAATCACAAATTCTAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC



gi|86852949|gb|CI323258.1|CI323258 CI323258 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TACCAACCGGGACTAAAGAGG
.|||||||.||| ||||.| |
GTGGTTGGTCCTAATTTTTAC

EST sequence (targeted fragment marked with yellow):
GGGAAGAGATTTGTGTAGTTCCAACTCGATTTGGGAAAAAATAATGAAAAAAAAAAGTGGCTACCCAGGACTGGCGCTGCCATCGCCATCTTTAATCCCAGTTGCTAACCGGGACTGGCGCTGCCATCGCCATTTTTAATCCTGGTTGGTGATACGAACCGGGATTAAAGATCATTTTTATCTCCCGGTTATTTCACCCGGGATTAAAGATGAGTATCTTTAGTCCCGGATTGTACTCCCGATTGCAAAACCGGAACTATAGGGGGTTACTAACCGGGAGGAAAAACCCTTTCTTTACCACGTGGATCATCCTCCTCTATAAATGGGTTCTCATCCATAGCCGTCTTATCCTCCAATTCAACCCCATCCAACCCCTCCAAGAAGCTCTAAGCCACCCATTCACCTTCTATTAGACCCATCTTGTGGTAGTACTCTATGAGCTCGACCAATCGCAGTAGGGT



gi|29638159|gb|CB643168.1|CB643168 OSJNEb03L11.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb03L11 3', mRNA sequence

TACCAACCGGGACTAAAGAGG
|||||||||||||||||.| .
ATGGTTGGCCCTGATTTTTAT

EST sequence (targeted fragment marked with yellow):
TAAATCTATAGTTTTCTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGGGTTAAAAGATCTTTATTTCAGCAATCGAGACTAAAGATCTATTTTTAGTCCCGGTTGGTAACATCAACCGAAACAAAAGATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTGGCCTTATCTCTTCCTCTCTAACCTTATCTCTTCCTCTTCCTTCTCTCCTTTTAACTCCTCTCCTCCTTTCCCTCCCCCATCATCCCCCCTATGATGGATGAGCCGGGCGGCCGGGCAGCGCGGAGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCAGGCTTTTTTTTCTTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGTGATGTGAATATGTGATGTATTGTGATGAATTTTGTAGAAGTTGTGATGTAATTTTTTTTAAGATTTTTGAAGTTTTTAAAGGGCCCGATTTGGGG



gi|88661734|gb|CI458939.1|CI458939 CI458939 Oryza sativa (japonica cultivar-group) 4.5 leaf-stage leaf Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
.||||||||||| |||||| .
GTGGTTGGCCCTCATTTCTAT

EST sequence (targeted fragment marked with yellow):
GGGATGTGAATCTGTGATGAATTTTTTTAGAACCCTGTGATGTAATTTTTTTAAGAGTTTGTGATGTATTTGGAGATGATTTGTTTGAGGATTTGAGGATTTGGAGATGTTCTGTGGTATGTGATGATTTGGATATGGGAGGGGACGGTGTGAAATCAATATTCAATATTAAAAGCAGAAAAAAAAAAGAAAAAAAATATCTTTACTCCCGGTTGGTGGCTCCATCTTTAGTCCCGGTTGGTAAAGATTGATTTTTAGTCCCGATTATTTGAACCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTCGTAGTCCCGGTTGAAAAACCGAGACTACAGGGAGGTTACGAACCGCGACTAAAAAGCATTTCTCCACCAGTGTCAGAACGTGGTCCATGTTAAAT



gi|88719196|gb|CI742706.1|CI742706 CI742706 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
|| |||||||||||||| ||
TTGCTTGGCCCTGATTTCACC

EST sequence (targeted fragment marked with yellow):
GTTGTAGTAATAAACCGGGACTAATAAGCCACTTTAGTCCCGGTTCGTTTTGGAACCGGAACTATTGTGGAAATCGGCCGATCCTCCAAAGACCTCTTCTCCAGTAGTGATGTTTACTTGCAGCTTCCATGTTAGGATTAACGGACGATTGATTATGCTGCTTGGTCTACATCAGCACCATGAGCTTCTTTCTACAGAGGTTGTTGGACTTCAATTCTGGATGCACCCCATTCTCAGAACATTTTCGATCGCTGTATGTTGAGCCGTTGATGCCTCCCAATTGGGCTGGAGAAAGGGGCTTCTCTCCCGGTTGCAACATGCATGTTCACTCAGTCTACAAAGGTATTGCAAGCTTTTCGTATTTTCAGTGTTGATCCTGCCTGTACACAGAAGAA



gi|88661734|gb|CI458939.1|CI458939 CI458939 Oryza sativa (japonica cultivar-group) 4.5 leaf-stage leaf Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
||||||||||||||||||| |
ATGGTTGGCCCTGATTTCTAC

EST sequence (targeted fragment marked with yellow):
GGGATGTGAATCTGTGATGAATTTTTTTAGAACCCTGTGATGTAATTTTTTTAAGAGTTTGTGATGTATTTGGAGATGATTTGTTTGAGGATTTGAGGATTTGGAGATGTTCTGTGGTATGTGATGATTTGGATATGGGAGGGGACGGTGTGAAATCAATATTCAATATTAAAAGCAGAAAAAAAAAAGAAAAAAAATATCTTTACTCCCGGTTGGTGGCTCCATCTTTAGTCCCGGTTGGTAAAGATTGATTTTTAGTCCCGATTATTTGAACCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTCGTAGTCCCGGTTGAAAAACCGAGACTACAGGGAGGTTACGAACCGCGACTAAAAAGCATTTCTCCACCAGTGTCAGAACGTGGTCCATGTTAAAT



gi|89198071|gb|CI117549.1|CI117549 CI117549 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo

TACCAACCGGGACTAAAGAGG
.||||| |||||||||||||.
GTGGTTAGCCCTGATTTCTCT

EST sequence (targeted fragment marked with yellow):
GAGATATGTCTCCCACNTTGATTGGGAGAAAATAAAAAAGAAAAAGGGGATCATCTCACTACCGCAACCCTCTCTTTAGTCCCGTTGGCCCCTCTCTTTAGTCCCGATTGGTGTTGCTAACCGGGACTAAAGATCTATTTTTAGTTCCGGGTATTTGAACCGGGAATAAAGATAGCGATTTTTAGTCCCGGATTGGTAGTCCTGGTTAACCGGGACTACAGGGGGTTGCGAACCGTGACTAAAAATATTTCTCCACCAGTGGTTGTAACAATATTGCAAAATGTACTGTACTTATTACATGGTCATCATCGTGGGCAACACCAGTCCAGAGCCTCTGAACTTGCTCTCGGTAATCTCGTCGATCCTTGTGGCCATCTCCGGCGACAGGTAGTTCGGCCAGCCCCCGACGACGCCTCGCCGGAAGAACTCGGCGTTCCGCATCGGCTCCTCCATCAGCTCAATCGTCCCTGACCTGTTCACCTCCGCGCCCGCTAGGCTCTCGAAGCTGCACGCCTTC



gi|58597243|gb|CK007771.1|CK007771 27941rsicef_4037.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G

TACCAACCGGGACTAAAGAGG
||| ||||||||||| |.|.|
ATGCTTGGCCCTGATGTTTTC

EST sequence (targeted fragment marked with yellow):
GCACGAGGCGGGAGGCGATGCGGCCACACTGAGAGCCATCGCAGCCGTGAAGATGGCTGGGAAGGTGTGGAGCAAAGTGCCGCTGCATTGGTCTGGGGCTACGAGACGGGATGAAGGAATGGATATTGCGACCAATGGAGGTGAAAGCATTCTACAGTCCACCGTGAGCGTGAGTTGAAATTATCTCGCCGCAGGTACGAGAGCGTCGGGTAGTATTCCACCGCCGGCAACGGCCGCTTCGCTAGGGGAACATAGCCGGAGGTTTTAGCACAACCGCCGGACAAGTGGCGACATTCGTGTTCTTCCTCGCCCATATGCTGCACTGATTAAAGAAGAACACCGACGAGCTGTTCTTCATTTCTTCATCCCGTCGATGTCCGGGATGCGGAACAGCTCGCCGCTGATAGTGTTGCAGATGAAGCGCTTGCACTGGTGGAGAAACCTTTTGTAGTCCCGGTTCGTAACCCCCTTTAGTCCCGGTTGGTGTTACCAACCGGAACTAAAGATCGATCTGACCTTTTTTTTTTCATGGCCCTGTTGCTGCATGGTTTATATATATATATATATATATATATATA



gi|88555731|gb|CI486009.1|CI486009 CI486009 Oryza sativa (japonica cultivar-group) 15 days after pollination pistil Oryza sativa

TACCAACCGGGACTAAAGAGG
|||||||||||||||||||||
ATGGTTGGCCCTGATTTCTCC

EST sequence (targeted fragment marked with yellow):
CGGGAGAAAATACATAGATTAACACTAGCCATTAGCAAATCAACAACAAAATAATAATAAAAAAAATCTCGAGGAACTGTCGCTTCCCCTCTTTAGTCCCGGTTGGTAGATTCCCTCTCTTTACTCCCGGTTGGTGTTACCAACCGGGACTATTATTTGAACCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTCGTAGTCCCGGTTGGAAAACCGGGACTAAAGGGGGGTTATCAACCGGGACTACAAACGGTTTCTCCACCAGTGTGAGATGCACACGATAGTATGCATCATACACTTGTTATTTGACTATACAAGTAATTGAAATTCGATCAACAACAACCATAAGGAAAGAGTTGAAAGTTGGCGGGTGCCATGTTGCACACATATGGCAGTTGCAT



gi|88330140|gb|CI658443.1|CI658443 CI658443 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
||||||||||| |||||||
ATGGTTGGCCCCGATTTCTAG

EST sequence (targeted fragment marked with yellow):
GGTTGGTAATACCAACCGGGACTATAGATCTCGGGGATCTTTAGCCCCGGTTGGTAACACGAACTGGGACTAAAGTCCCACCCCTATATATATGTCTTCTTCCTCCTCCAGTTGCCCGAGCAAGCTTCAAAATTTCTTCAAAAAAGAGGGGAGGTCATGCCAAAATTTCTAGTGAATTTATTTTGGTGATTACATACAAATCGGAGGTGCCTAAAAGATGGATTGGCAATAGATGTACCCTGACCGGCGGTCCACAGAGTTTATTGACGGCGTGCACTATTTTTTGAGAGTGGCCGAAGCTAACAGGCAAAGGGGTTTTATTTGTTGTCCATGCAATAAGTGTAAGAATCAGAAGGCTAGTGGAAGTCAACCCTCCGTTGGACAGAAGAGGGCATGC



gi|88729868|gb|CI753089.1|CI753089 CI753089 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
||||||||||||||||||| |
ATGGTTGGCCCTGATTTCTAC

EST sequence (targeted fragment marked with yellow):
TTAGTCCCGGTTGGTTACTAAAGATCCTAACTTTACTCCCGGTTGGTGTGATCCCCGGGATCTTTAGTCCCGGTTGGTAACATCTTTAGTCCCGGTTGGTAATACCAACTGGGACTAAAAATCCCCCTTTATATATGTCTTCTTCCTTCTCCAGCCCGAGCAAGCTTTAAAATTTCTCAAAGAAAGAGGGGAGGTCATGCCAAAATTTCTTGTGAAATTTTTCTAGTGATTATATACAAATCGGAGGTGTCTAAAAGGTTAGTAACTTCATCCTCCAATATTTTTTGTCGTTATATTACTTTTGGAGCTATGTTTCAGACATTTTTTTTGTCTCCAAAACTTTGGTGTAAGTTGATGAGAGAGAAAATTCGTGTGGGGAAGAAG



gi|66912721|gb|CX099569.1|CX099569 RECm0182 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

TACCAACCGGGACTAAAGAGG
|| |||||||||| | |||.|
ATTGTTGGCCCTGTTGTCTTC

EST sequence (targeted fragment marked with yellow):
GTACGTGCTCTGTATGTCTGTGTCCGGAATCCTGGGTCGACCCACGCTGTCGATGTGCTGCATACTATGTTCTGGTGCCTATCTACATGTGGATAAAGGACCAGATTGTGCCCAAAGGCATGCCGATCTAAGGGAGATGAACTGAGCTGCAAGAGAGGATAGCCAATATCTGAATTTGGCTTCTCTATATTAGGCACTTTCTGTCAGTTCTGTATTAACTTCTGTTGTCCCGGTTGTTATGTACTTCTTTTACTGTGGTTCTTGTTTGTGGGGAAATAATATTATGAGACCTTGATTAAGTTCATCCGAACTCCTGAGCATGGAATGGATCGTGTGTAGCATAATTAGAATGGACATGTGACATTTTTGCATTCCAAGTATTTTGAATGGTAGACAAACAAATAATATTTGAATTCGATCCCCATTTATTGTTTTGCCAAAAA



gi|29629679|gb|CB634688.1|CB634688 OSIIEb14F22.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb14F22 3', mRNA sequence

TACCAACCGGGACTAAAGAGG
|||||||||||||||||.|||
ATGGTTGGCCCTGATTTTTCC

EST sequence (targeted fragment marked with yellow):
ACAAAGTTTGATAATCCTATAGTCAGATATTACCCAAGAAACCTAATGAATTATGCTCACTTGGCTGGTTGTAAACAAATTATGTTCAATAGTACGCTGGTTGTAAACAAATAATTCTGGTCCCTAGGAGAAACAAAAGAATATTAATTTGCAGAATAAACCTATAATAACGTTGAAATATAATCGCTGGAGTAAGAGTATCAATTTGCAGAAGGTGCTGCTACATATGCATCTCTTGGTACGATTAATTCGGCGATTTCTCATAGGTAAGTATTGATTAGAGAAGCGGATAAAAAATTTCTCAATATGAATTAATGGTACTTCGATCACTATTAATTACTCCAGCCTCAAGTTACTAATTAAGGGGGGAGATCTACGCACAGCAGCCGATGTGTACTATTCATGTGATCATTAACACAGGGGGAGAAAGGGGTTTTACTCCCGGTTCGTAACCCCCTGTAGTCCCGGTTTCAACCAGGACTAGACTAAAGATCACTATCTTTAGTCCCTGATCTTTAGTCCCGGGTGAAAAAACCAGAAGTAAAAATCCATAAGATAGAGCCTTTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATAGAGCTAGCCTAGCTAGATCGGTTGCTTTATTTTCTTTTCTTCATTGTGTTTTTAATAATTTGATTTCGCTCCATCCCTATCCCAAAATCCCAAATAAATTATCCCCAAATCCTCAAATCCCCAAATCGGCCATATTCAAATAGATCACAAAATCTTAAAACAAAATTACATCACAACTTCTACAAAATTCATCACAAATACATCACATATTCACGCACATCACACACAAATCAAATACACATATCCAAATCACAAATTCT



gi|88555731|gb|CI486009.1|CI486009 CI486009 Oryza sativa (japonica cultivar-group) 15 days after pollination pistil Oryza sativa

TACCAACCGGGACTAAAGAGG
.||||||||||| |||||||.
GTGGTTGGCCCTCATTTCTCT

EST sequence (targeted fragment marked with yellow):
CGGGAGAAAATACATAGATTAACACTAGCCATTAGCAAATCAACAACAAAATAATAATAAAAAAAATCTCGAGGAACTGTCGCTTCCCCTCTTTAGTCCCGGTTGGTAGATTCCCTCTCTTTACTCCCGGTTGGTGTTACCAACCGGGACTATTATTTGAACCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTCGTAGTCCCGGTTGGAAAACCGGGACTAAAGGGGGGTTATCAACCGGGACTACAAACGGTTTCTCCACCAGTGTGAGATGCACACGATAGTATGCATCATACACTTGTTATTTGACTATACAAGTAATTGAAATTCGATCAACAACAACCATAAGGAAAGAGTTGAAAGTTGGCGGGTGCCATGTTGCACACATATGGCAGTTGCAT



gi|88717608|gb|CI741118.1|CI741118 CI741118 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
|||||||||||||||||||
ATGGTTGGCCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
TTACTCCCGGTTGGTTACTAAAGATCCTAACTTTAGTCCCGGTTGGTGTGATCCCCGGGATCTTTAGTCCCGGTTGGTAACATCTTTAGTCCCGGTTGGTAATACCAACTGGGACTAAAAATCCCCCTTTATATATGTCTTCTTCCTTCTCCAGCCCGAGCAAGCTTTAAAATTTCTCAAAGAAAGAGGGGAGGTCATGCCAAAATTTCTTGTGAAATTTTTTTAGTGATTATATACAAATCGGAGGTGTCTAAAAGGTTAGTAACTTCATCCTCCAATATTTTTTGTTGTTATATTACTTTTGGAGCTATGTTTCAGACATTTCTTTTGTCTCCAAAACTTTGGTGTAAGTT



gi|88724795|gb|CI748054.1|CI748054 CI748054 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
|||||||||||||||||||
ATGGTTGGCCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
GTTAAAAAGGGTAACGGACATATTTGATCTTTACTCGGGCATATTTGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATCATCTTCAGCCCCGGTTTTCATTGCAACCAGGACTATTGTGGAATTCGGCCGACCGACCAAAGATGGTCTCTCCACCAGTGGTTATGATTCTCCTGTCTGGAAAGAAAATATAAAAAAGATTATACGAAGGTTCAAAAAAAACTCGTTATTAATCCGATGCTAGATAAACCTTAGGTCAGTGTCCCGTATACGAAGAGGGTGAAATGCGATGAGCCTCATCAATTTTATGCCTACAAGAATAATGCATGTGTATGTGCA



gi|88730993|gb|CI754606.1|CI754606 CI754606 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
|||||||||||||||||||
ATGGTTGGCCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTCCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGGTCGACCGACCAA



gi|88724251|gb|CI747510.1|CI747510 CI747510 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
.|||||||.||||||||||
GTGGTTGGTCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
TAAATTATTTTATACCAAATGCTTACAAGAGACAGCAAAAACAGTTTAAATCTATATTTCTAATCACTGGTGGAGAAACCAATCTTTGGTCGGTCGGCCGAAATCCACAATAGTCCCGATTCCACTAAAAACCGGGACTAAAGATGATCTTTAGTCCTGGTTGGTGGCTACAGTGGGCATATTTGATCTTTAGTCCCGGTTGGCACCAACCGGGACTAAAGATGATCTTTAGTCTCGGTTCTAAACCTGTTAGTCCTTGTCAGGCCCCCAACTTTACTCCCGGTTGGTGTTATAAACCTGGACTAAAGATCTAGAAGATTTTTAATCCCAGTTGGTATTACCAACCGGGACTAAAATTCAANGCTTA



gi|88724251|gb|CI747510.1|CI747510 CI747510 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
.||||||||||| ||||| |
GTGGTTGGCCCTCATTTCAAC

EST sequence (targeted fragment marked with yellow):
TAAATTATTTTATACCAAATGCTTACAAGAGACAGCAAAAACAGTTTAAATCTATATTTCTAATCACTGGTGGAGAAACCAATCTTTGGTCGGTCGGCCGAAATCCACAATAGTCCCGATTCCACTAAAAACCGGGACTAAAGATGATCTTTAGTCCTGGTTGGTGGCTACAGTGGGCATATTTGATCTTTAGTCCCGGTTGGCACCAACCGGGACTAAAGATGATCTTTAGTCTCGGTTCTAAACCTGTTAGTCCTTGTCAGGCCCCCAACTTTACTCCCGGTTGGTGTTATAAACCTGGACTAAAGATCTAGAAGATTTTTAATCCCAGTTGGTATTACCAACCGGGACTAAAATTCAANGCTTA



gi|88991032|gb|CI108419.1|CI108419 CI108419 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage Oryza sativa Jap

TACCAACCGGGACTAAAGAGG
|||||| |||| |||||||.
TTGGTTGACCCTCATTTCTCT

EST sequence (targeted fragment marked with yellow):
GAGATTTCACCAAAGAATTCATCTCTTTACTCCCAGTTGGTTGCTCGATGTTGTTCTTTGCTCTGCTCACCTCATTCACTTCACTACCCTCAGGTCGATGTTCTAACAGTCGGCGCGACTGTGCCCAGGGTGGGTGGAGGCAGGACAGCGGTGGCACCTCCTGCAGCCCGTGCACGGAAGATGACTGGGGGGAGGGGAGGGACAGCGGCGCCTCCTACGCTCGGACACCCGGTGCGCAACCACTCGACCAGGATCCAAGGCAATGTACTGGTTGGGGTCCATGGGTTCAATCCATTTTAAAACCAAAAACACTTCAGCCAGATCCAATCCAATCCAAACCGCTTCACTTGTAGCCCCAAATCGATCCAGGCCAAATCTTAAATCAATCCAGTCGGACCCAACCAAAGCCAACCCGTTCTTAGATCCAACCCATTCAGCCCACTTAAATCCAGTCCATTAGCACCCCTATAAATGATAATGTAAAGGTGCTAGCTAGGCACCAGTACATGCAAACAATGATATA



gi|58656711|gb|CK045391.1|CK045391 42857siceh_0522.z1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gro

TACCAACCGGGACTAAAGAGG
.||||||||||||||||||
GTGGTTGGCCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
TATAGTCCCGGTTTCCTAACGGGACTACAATCTAGGACTAAAGATAGCTATCTTTAGTCCCGGGCGAAATAACCGGGAGTAAAGATCTATCTTTAGTCCCAGTTGATAACATCAACCGGGACTAAAGAGAGGGATCTTTAGTCCCGGTTGGTGTTACCAACCAGGACTAAAGAGAGGATAGGGACAATCCCGGATGGTCCTTTTTTTTGTTACTTTTTTATTTTCTTCCGAATCGGATGGCATGCACATCCCAAATCAAACCACAAATCCCAAATAAAGTAACATCTCAAATCCACATCACAAATCCCAAATCCACATCACAAATCTTAAAATTACTTATACACACAAATCTAAAACATCACAAATCCTAAAAAATTTACGCACAAATCAAATACATCACAGATTATACATCTCAAATCCATACAATGAATCACAAAATTACATCTAAGTGAATCACAAAATATCAAAAAAAAAAGAGATGGTCGTCTGCGCCGCACGCCT



gi|88721289|gb|CI744588.1|CI744588 CI744588 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
.||||||||||||||||||
GTGGTTGGCCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACCAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTACCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGG



gi|66929560|gb|CX116408.1|CX116408 EI104D17 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

TACCAACCGGGACTAAAGAGG
|||||||||||||||||.|
ATGGTTGGCCCTGATTTTTAG

EST sequence (targeted fragment marked with yellow):
AAACAACTGTCTCAAAATCAGTTAATTAGTAGCTTAGATAGCAAAGATCATCGGAGGATCGGCGATGGCGGCGGCGCTCAGGACCACCGGCGGCCGGCGGCTGGCGGCGGTGCTCGTCATGATGCTGTTCGTCTTGGCGGCAGCGCTGCTGGAGGCGCCAGCGATGGCCTCCGCCGCGAGGGTGTTGCTTCAAAGTGGACAGCTTCCGACTCCGTATCCGACCTGCAATCCAGGCCAATATCCATGCCCATCGCGTACTACTGTGCCATGATTCACTGGTGGAGAAATCGTTTGTAGTCCCGGTTCGTAATCCCCCTTTAGTCCCGGTTGTCTAATCGGGACTACGAATCCGAGACTAAAAATAGCGATTTTTAGTCCCGTGTGAAATAACCGGGACTAAAGATCGATTTTTAGTCCCGGTTGGTAACACGAACCGGGACTAAAGATCGGTCAGCCACGTGGCTGGCTGATCCATCTTTAGTCTCGGTTGGTGTTACCAACGGGACTAAAGATCTATGTACCATTTTTTTTTATTTGCATTGCCATGTTTGCTGCATGGTTGATTATACACACCATATATATATATATATATATATATATATATATATATATATATATATATATATACATACATATATACATATATACCTATATATATATACCTATATATATGCGCATGTTATATGTCACACAACAATTTACCCGCTTTTCATGTTAAAGGCTCAACTTAATGACACATTTGTTGCCAAATATTAAACCAAGAGAAGAGCCCAATAAAAGAATTATAACGCACATAACAAACGAGACCACATGGAGGCGAAAAAGAACTAAGAGACTG



gi|89161954|gb|CI102302.1|CI102302 CI102302 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativa

TACCAACCGGGACTAAAGAGG
|| ||||||||||||||| |
CTGATTGGCCCTGATTTCTAC

EST sequence (targeted fragment marked with yellow):
TTTCCCGGTTGATCCCTTCTTTTTAGTCCTGGTTGGTGGCTAAGGATACATCTTTAGTCCCGGTTAGTCCCGGATCCTTACTCCCGGTTGGAAAACCGGGATTAAATGGATATCCAACCGGGAGTAAAGATGGTTTCTCCACGAGTGTAGGGTGATTTGTGAAACCAGCTAATTATAATTTAAATCGATNAATAAAAGAATTAGTGATGATTAGCGCTTGGGTGGGAGGCGGGAGGAGTGGGTGGAGGTGGAGGTGGTGGAGTAGTCGTCGGTGTAGTCGCCGCTGTCGAAGGCCACCTGCCGATGCCGCGAGATCTCCGATGAGGCGGAGAAGTCGTCGTCGTGGTGGTGGTCCAGCGAGAGCGAGGCGTCCCCCTCCAGCGCCCTCACGATCTGGCTCATCTTGGGCCGCTGCCGCGCCGAGTGCCGGATGCTCGCCGCCGCGCACGCCGCCATCCTCTCCACCTCCACCGCCGAGTACTCCCCGCCCAGCCGCGAGTCCACCAGCTCCCGGAT



gi|29624641|gb|CB629652.1|CB629652 OSIIEb06B02.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb06B02 5', mRNA sequence

TACCAACCGGGACTAAAGAGG
.||||||||||| ||||| |
GTGGTTGGCCCTTTTTTCTAC

EST sequence (targeted fragment marked with yellow):
TGGAGGAAGAGGCGTAGAGATAAGGCTGCCCGTTTCCTCCTCCTCCTCGATCTCGTAGATGGCAGATGCCTCGTACTCTCCGCCACGATCTTTTGTTCTGGTTGGTAATACCAACCGGGACTAAAGATAGTAGGCATCTTTTTTCCCGGTTGGTGTTACCAACCGGGACTAAAAATAGCCAACGGGGACTAAAGATTAAAAAGCAGCTCTAAACTTTTGAACTGGGGCTAAAGATAATCTTTAATCCCGGTTTTTATTGCAACCGGGACTATCGTGGATTTTGGCCGACTGAGCAAATATGGTTTCTCCACCAGTGTAAATTCGGAACGTAACTTTTAATTTAGAAGTGAAGATATTATTAGCTTTACAGCACGGCATCAGCGAAATGACAGCAATATTAGTTTTATCAAGGCGAAATCGTACAAGTTATTGGGGTATCTATTTGTAAACTGGATTATCTTTTATATATTATCTACCAGTCACTTTTTAACTTCTAAATAACAATATTTACGTGCCAAACTTTTTTTTCGGATGAGACACATATACTGTGTTATAACTTTTTATTTTTTTAAAAAAAATACACTTCAGTGTAGATCTTACGAACATTAACAACTTATAATATATTTAGATTAATCCAGTAGAAGTATGGTAATGAAAATTAAAAGTCATACTAAATGTGTAGTTTTTCGGATTGTACAGTTCAGTTGAGTCGGTTAAGAAAAAAATTGAAGCAATTAATTGATAGATATATAGAGTGATTGCCATGTGCTTTGCCATCTCAGTGCATGCTGATTCATACGCCAATATCTAACTGATCGTCGGCATGCTGGACCAAT



gi|88694914|gb|CI738952.1|CI738952 CI738952 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro

TACCAACCGGGACTAAAGAGG
||||||||||||||||||| .
ATGGTTGGCCCTGATTTCTAT

EST sequence (targeted fragment marked with yellow):
GTTGTCGGAATCTGTGATATATTTTGTAGAACTCGTGATGTAATTTTCCTAAGAGTTTGTGATGTATTTGGAGATGATCTATTCGAAGATTTGGAGATGTTCTGTGATATGTGAGAATTTGGATTTGGGATTCCTTGGCATGATTAGGGGATGGTGTGAAATCAATATTCAATACTAAAACAATGAAAAAGAGATAAAAAAGAAAAAATATCTTTAGTCCCGGTTGGTAACAACAACCGGGACTAAAGTCTCCCATCTTTACTCCGATTGTCGTTACCAACAACTACAGATTGATTTTTACTCCTGGTTATTTGAACCGGGATCAAAGATAGCGATCTTTACTCCCGGATCCGTAGTCCC



gi|29623965|gb|CB628976.1|CB628976 OSIIEb04N19.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb04N19 3', mRNA sequence

TACCAACCGGGACTAAAGAGG
|||||||||||||||||||
ATGGTTGGCCCTGATTTCTAG

EST sequence (targeted fragment marked with yellow):
AGATGCAGCAACTGGTACACGGGCGTCATTTACAGCAGATGCAGCAAATGGTACGCGAGCGTCAGCAACTGGAGGAACGCGAGCGTCAGCAACTGGAGGAACGCGATCGCTACGAGCGCTGGTGGATGCGGGAACCCTTTGCAGTCCCGGTTTCTAACCCCCTTTAGTCCCGGTTTTGAAACCGGGAGTACCAATCCGGGACTAAAGATCGCTATCTTTAGTCCCGGGTGAAATAACCGGGGCTAAAAATCGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATCGAGCTGACCTTTTTTTTTTTGCATGGCCCTGTTGCTGCATATATATGTTTCAATACATATATATGCATACATATATATATATATATGTATATATATATATTATATTATATTATATGTATATACATGCATAATATATATGTATTTATACATATATATGTTATGCAAATGCATATGTACTGTATATAGATATATATATGACCAAAATATATTTACATTATAGAAAATGTGTACACATGCATATAGAAACATATGTAGTCATGTATTAATTACAATCCATTATATGTCCTAGCTAGCTACGATTTCGACGTAGTAGTACTCGCTGCTAGCTCAGAAGCTAAGGACCGGTGAATTGTGTTTCCGTCGTAGTAGAATTCACCCTTGGGATCAAGGATTTCTTCGTTGATGAATCCCATGAGTTGTTCTTGAACCGCCGCGATAAATTCCTTGTGTGTGGTCAGGTTATCCCTCATGCAAATAAACTATATGAATGTATGAAATTGATTAGTAATGAAGCAAGAAATTGCTACGTAATGAAATTTTGAATTTAAAAAAAAG