| mature miRNA: TACCTGAAGCGGACATCTTGC species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161797078|gb|FC086814.1|FC086814 CACW17054.rev CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD TACCTGAAGCGGACATCTTGC EST sequence (targeted fragment marked with yellow): TTCCTGGAGAAGGAGCTGCGCTTTGCCGCGCCCGCGCCCGCCTAGCGGGGCAGCAGCTTTGGCACCGGAGCAAGTGGCGGCGGTGCAGGTAGTGGTGATGCAAACGCGCACAACGGTCGCGAGCGGCGGCGAGCGGCCTCTGGGCGAGGGAGCAGAGCGAGCGAGCTGTCAGCGGCTGCAGAGCTGCGGCATTGCACTGCCGCTGTGGCGGGCTTGGCCCGTGCGCTTTAGCGCAGGGCACAGGCTGTACGAACACCCGGTTCATGTAGCTGGCTTGCAGCGGTGTGTGCAGGAGGGGTGCAGCAGGACCGCTTCAGGTACAAAGAGGTGTGACTGATTCAAGCGCTAGTAGGCATGGCAGTGGGCATGGTCAGCGTGTGGAGAACCGCAGGGGCAGGGCCGACGGCCCGGCGTGGCAGGGACGCCATTTGCGTTACGCGGCCTAGAGGCTGCAGCTACTTAAACTGTGACAAATGACGGAGGTGTGCTCGTTCAGGCCGCATTAATGTTTCGCTACGGCTAGGGATGGTCGTGACCTAGGTGTGTCGTGATGTGATGCAGCGGTATGCGGAAGGGGTACGTGCATAGGCGCACACAGGTGGCTTCACCAGTGCAAACGGTGACGGGAGGGGTGGCTCGCGACAGCAGTGTGGTACGTATGTCACGAAGGGCAAGCAAGGCGGGGCTTGCAAGGCTGCAAGTGTAAACGGCTTCCTGGCGCC | |||||||||
gi|16437708|gb|BM002928.1|BM002928 1031107E01.y1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei TACCTGAAGCGGACATCTTGC EST sequence (targeted fragment marked with yellow): CACGAGGAGAGCGCCTTTGACTGTGATGCACTTACTGTCAGATCGTAGTTGCGTGGAAAGCGAGTGAGATGGTCGGTTCAGGTAATCCTGAAACATGTGTGCAGCCAGGGTCCGCCGCAGAGGGATAGAGGCAGTGTAACGTGCTCTGGAATGAAGAGTTTCATGTGTTTCTCCGTGGATTGTACGGTTCCCCCGTGTTTCTGTTTTCGAATCGCGTCTCAAGACGCAGTGCGTCTTGTGCATCGCGTGTGTGTGAGACGCGGCGCGTCTAGGGTATCAGGCTAGCGTCTGGTGTGACGCATCGCGTTAGCTAAGACGCGCTCTCCATGCAATTGTACCGCGTCACGACTCGCGTTCCATTGCGTCTCGCAGACGCAGTGAAACGCGCTATCTGCAATGGTGCCCCGCTTCACTGTTTCTGGTTGCGTCCCCATCGCGTCTATCCCGCGTCTCCCCCGCGTTTCCCCCTTAACGCGCAGCGTCTCGGCGCGTCTGACACCGCGTCTCACAGGTCAGACGCGGCCCAGACGCGCCCAGACGCGCTTTCCCGTTGTTATAGTGGTGTTTGGGGACGGCTGGGTACACAGGAGAGGTTCCCTTCCGAGTTCCGCG | |||||||||