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mature miRNA: TACGGCTGCTTAAGACGCCC
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88269449|gb|CI380747.1|CI380747 CI380747 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone 

TACGGCTGCTTAAGACGCCC
|||||||||||||.| |||
ATGCCGACGAATTTTCCGGA

EST sequence (targeted fragment marked with yellow):
CGATCTATACACCAATCAATGAGGCCTTTTAAGCAGCCGTATAAGAATCCGAGCTGCATGTAGTATGTCATCACGTCCAGTGATCTGAATTTTTTTAACATTCATATATGAATTCTGTGCGTAAATTGGTCTCTCTTTTCATACACATTTCGTACGGTTTCTCACTATACACACTATATACTGTTATTTTTTAGATAATACACACTGTATACTGTTATTCAATCTCCTGACTCTCTTTGCTCCACACTTCACAGCAGCCAGTGAAGTCTGAAACTCTGACTGAGGCTGCATTATTACTGTTCTTCATCAATCTCGGCTGGAAAACACATGATGGCAGTAAGATCAGACTCACATCCGGGCCTTGGCATTGTTCTTCGCGGTGGAGCTCAGAGGAACACCTTCTGCTGCCCTTTCTGACAGGTATGAGCAAGGCCTGA


gi|44675566|gb|CR289000.1|CR289000 CR289000 Oryza sativa library (Han B) Oryza sativa cDNA clone p549a04p5, mRNA sequence 

TACGGCTGCTTAAGACGCCC
||||||..||||||||  ||
ATGCCGGTGAATTCTGGTGG

EST sequence (targeted fragment marked with yellow):
GATGGTGAGGGAGGTAAGAGTTGATGGCTTGTCCTTGTGCTTCTTGTGGAAGCTCATCTCGAAGGACCGGACCTCGAGCCGGTAGTTGCCGTCCCGCCACGGCCGTTGCCGTTGCCGTTGCTGCTGCTGGAGTTGTCGCGGCAGACGAGGCGCCACCTGAACTCGGAGCCCTCATGGACGTCGGCCATCTCCTCGCCCTCCTCCATGCTGAACATCATGCTCTTGGTCTCGTCGACGCGGCTGACCCGGAGGCGCTGCATGTCGGTGTTGATCCTGGTGGCGAGGTACCCGACGCCGGAGAAGAGCAGGTCCCGCACCTCGTACGGCACCAGCTCGTTCACGACGCCGCGCACCAGCATCGCCGACGCCGCCAGGGACGCCGCCGTGGTGACGGCCCTCTTGTACGACTCGATGGCCTTGTCGTAGGACGCCATGGCTGGCTGGCCGTCCGGCGAGCCTGCTGCTGCTGTTGGCTCTGGTACGTCTCTGAAAACCTTCTTTCCTTCCAGACGAAGTGTTTGGTGGTGGTCTTAAGTGGCCGTATGCTGGTAATGGTCGGTGTTGAATGACTGGGCGTTTAGCTCATTAGCTGGGCTCCCGGTTTTATAGACGCCAGTTGGTTCTGTGTCAAAGTGGTTGATGTCCCTGATGATGACTGATTATTAGTAACATGAGGCTTAACACAAAAAAATATGGGGCAGATTAGTGCGGTTGTCCAAAAAAAAAAAAAAAAAAACAAAAAAAAAATTTTGGGCGGCTTTGGCCCGATGAATCTAAATCGAACAAGTTATAATGGGGCGAAATAAAGCTCAACTGGGCAAATCGCTAAAAGAGACGATCAAAACACTGG


gi|86839751|gb|CI343674.1|CI343674 CI343674 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone 

TACGGCTGCTTAAGACGCCC
|||||||||||||.| |||
ATGCCGACGAATTTTCCGGA

EST sequence (targeted fragment marked with yellow):
ACACCAATCAATGAGGCCTTTTAAGCAGCCGTATAAGAATCCGAGCTGCATGTAGTATGTCATCACGTCCAGTGATCTGAATTTTTTTAACATTCATATATCAATTCTGTGCGTAAATTGGTCTCTCTTTTCATACACATTTCGTACGGTTTCTCACTATACACACTATATACTGTTATTTTTTAGATAATACACACTGTATACTGTTATTCAATCTCCTGACTCTCTTTGCTCCACACTTCACAGCAGCCAGTGAAGTCTGAAACTCTGACTGAGGCTGCATTATTACTGTTCTTCATCAATCTCGGCTGGAAAACACATGATGGCAGTAAGATCAGACTCACATCCGGGCCTTGGCATTGTTCTTCGCGGTGGAGCTCAGAGGAACACCTTCTGCTGCCCTTTCTGACAGGTATGAGCAAGGC


gi|29659361|gb|CB655636.1|CB655636 OSJNEc09E02.f OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc09E02 5', mRNA sequence 

TACGGCTGCTTAAGACGCCC
|||.||||||||| ||||
ATGTCGACGAATTATGCGTA

EST sequence (targeted fragment marked with yellow):
GCCACCTCGTGGGTGGAGGGATCGGCGCCGACGTGTGGTGCGCGCCTGGGATACCGTTCGCCGCGGAGGCGTCGTCCGTGGACTGCGTGGTGGCGCGGCACCAGATGGTGGGGAGAGGCCGTGGCGGCGACGCGGAGAGGCCGCACAGAGAGAGACCGTGCCTGTCCAGGAGGGTGACCGTGCAGGAGCAGATATCGTCGTCGTTCATGGACTCGCCGCCGCCGCCGCACCTCGACGTCGCGCCCTTCTTCGGCGCCGACCTCCTCCCCTCCGGCCGCCTCCGCCGGATGCGCGGGTACCGCCACTCCCCCGTCGGCCTCGAGGAAGAGGTAAAAAACGTCACAGGCTCACGGTAGTAGCAGCAGTACTAGTACTGGCACAGTAGCGCACACTGCAACAAACGTTCGTTCGTTTCCTCGTTGCCCCCACACTGCATTTTGCTTGCTTGCACACTTGTCCTGAGCCACCGCATTGCATGCATCGGTAGATACATTTTTCCAACGTACTCCTAAGTCGGAGATGGACACGGCCCGCAACAAGTGCGCATGCTGACAGCGGTTGGTGGTGCGACACGCTGCCTGCCTGCATAAGATTCCCGTGCGTAGGGTAGTTTAGCGCGTGATCTGACATGCGTATTAAGCAGCTGTAACGCGTGATATAGATTAATAGTAGTAGTATTAGAAGTGGAGTAGATTGATTGTCTGGTGGTGCGCGAGTGAACCTGGGGGGTGGCCGGCTGGCCGGGTGGGCGTTGGAAGTGGTTGACTTGCATCTTTCGTGCGCTAAACGTGACGTGAGATCGTGGCCTTCTTGGAGGTTAACTAATCGGCAGCCTTACACAGGCGCGCACAAT


gi|89190623|gb|CI392476.1|CI392476 CI392476 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J 

TACGGCTGCTTAAGACGCCC
|||||||||||||.| |||
ATGCCGACGAATTTTCCGGA

EST sequence (targeted fragment marked with yellow):
GAACAAGTAGAAAATTTCGATCTATACACCAATCAATGAGGCCTTTTAAGCAGCCGTATAAGAATCCGAGCTGCATGTAGTATGTCATCACGTCCAGTGATCTGAATTTTTTTAACATTCATATATGAATTCTGTGCGTAAATTGGTCTCTCTTTTCATACACATTTCGTACGGTTTCTCACTATACACACTATATACTGTTATTTTTTAGATAATACACACTGTATACTGTTATTCAATCTCCTGACTCTCTTTGCTCCACACTTCACAGCAGCCAGTGAAGTCTGAAACTCTGACTGAGGCTGCATTATTACTGTTCTTCATCAATCTCGGCTGGAAAACACATGATGGCAGTAAGATCAGACTCACATCCGGGCCTTGGCATTGTTCTTCGCGGTGGAGCTCAGAGGAACACCTTCTGCTGCCCTTTCTGACA