| mature miRNA: TACGGGATAATCGATTATCCA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88558591|gb|CI489088.1|CI489088 CI489088 Oryza sativa (japonica cultivar-group) 30 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GGAAAGCTGATGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGNATCCAAACATGATAGATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACCGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTACTCCGTCAGCGCGCTCGCCATCCCGGCGATCGTNGCGGCGTCGCACCCGGGCGCCGGGTGCTGCGAGATCATCCCGGCGAAGAGGTCGCCCTCCTCCGTGAACACGCCACGC | |||||||||
gi|88212235|gb|CI211875.1|CI211875 CI211875 Oryza sativa (japonica cultivar-group) same as Lib 33(supermix) Oryza sativa Japonic TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): TTGATTAAACGTCGGATTATCCATTATCTAAATAATATACTCATATACAAATTAAGGTGTGATAACGACAAGAAATTCATACATTTTTGCATGCTTGAAGTTTAGAACGGTCATGAAAATCTTCGTCAATTTTGGATGAAGAATGTATCTCCTTTTTGGTTGACACTACTACAATACCCATTTTTCCATGCGGGTGTTTGGATTATCCCGTGCGGGGGTCCGGCCCGTTTGCAGCCGGTCGTCTGGAAAAATCGCCATTTTTGCGTGCGGGCGGGCTGACCGCACGGGATAATCGATTATCCCGTGCGGTCATGTTATACCAACCGCACGGAATAATAAAAAAAGGGAAAAGAATCAAAATCCACCCACGAACCCTAATAAAAAATCAACATCGTCAACGTCATCGCCGCCTTCCCGAAGCCTGCCGTCATCGTCGCCGCCTTCCCGAAGCCCGTCGCCGTCGTCCCCGCGGTGGCAGGCCACGGATCCGGCCTCCCCGCGGTGGTCTGCCACGGATACGCTCTGCCACCGCCTTAGCCGATGCAG | |||||||||
gi|87026653|gb|CI254759.1|CI254759 CI254759 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCACCTGCACGGAATAAAAAAACCAAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGCACGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCCGCGTCACCTCCGCCAGCAGCCGTCGCGCCCTGCCAATAGAGCCGCCGACGCTGCCCCCGTGCCCTCTCCCGCCGCCACCTTCTCCTCCTCCTGGTCGCTCTCGCTGAGCCACTGCTTCCGCCGAGCCACTGCTCCCTCACGGGGAGGAGGGGAGGGGCCACCGCCGCCGTTGACGGGGGAGGGGAGGGGAAGGA | |||||||||
gi|88558363|gb|CI488845.1|CI488845 CI488845 Oryza sativa (japonica cultivar-group) 3 weeks after flowering ear Oryza sativa Japo TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTTTTTTTTGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACCATCCACGGAGAAAGCAGCATCCACACATGATAGATGCTANTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACC | |||||||||
gi|88550819|gb|CI480818.1|CI480818 CI480818 Oryza sativa (japonica cultivar-group) 40 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTTTTTTTTTTTTTGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGNGAGAAAGCAGCATCCAAACATGATAGATGCTACTAGCCAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTATAGATGTCCCGAATCAATTAAAATCTTAACCTGAGCGCATTTAGTCACGCACCGGACTGGTATGTGTTCTCCATAGACTTCAGGGCATAGCAGTGAACCCACCATCGAACCACAAAGCCACGGTATACGCCATCACTGTACCCAGGAACCCCATCAACCCAGCTCCACTTGCCACGGNTGTTGGCTAGCTCATCCTCCTCCCACATTGCCAGCTTCCCTCGCACCCGTTTTCCACCAAACCACACCTTGCAAT | |||||||||
gi|86504170|gb|CI146803.1|CI146803 CI146803 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GCCCGTCTATACCCAAATGTCTGAAAAAATCAATATTTTCGCGTACGGACGGCCCAACCGTATGGGATAATGGACCGCACGGGATAATCGATTATCCCGATGCGGTCATATTATATCGCTCGCACGGAAAAAAAACAAAAAAAAAGTGAAAATGGCCGCCGCCCGCTCGCCCGCTCGCCGCCGGCCTTGACGACNNGCACGCAACGACGGGCATCGTCGTCAAGNNGGAGCCGAGCGNNACGATGGTGCACGATGAGGACCACGACCAGGAGGAGATGCGACGACTGCTGCTCGCGGCTGCCGACGCCGTTGGCGAAGATGTTGGCGTGGAGCGTGTATGGCTTGCCGGTGACGTTGCCGAGGAACTCTAGGCCGATCTCGTCGTGAATCTCCCGTGGGAGCGCCGCCTCGCCCGGCCGCCGCTGCCGCCGCCGCCCTCTCCTGCAAGAATTTCCTCACGTACTCCCTCTCCCT | |||||||||
gi|88552555|gb|CI482572.1|CI482572 CI482572 Oryza sativa (japonica cultivar-group) 20 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATAGATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAACATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTCGAACCGCGCCGTATTCCGTCAGCGCGCTCGNCATCCCGGCCATCGTCGCGGCGTCGCACCCGGGCGCCGCGTGNTGCGAGATCATCCCGGCGACGCGGCCGCCCTCCCTCGCGACCACGCCCCGCACNAACACGCCC | |||||||||
gi|88538865|gb|CI467926.1|CI467926 CI467926 Oryza sativa (japonica cultivar-group) 20 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GGTGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATAGATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATCAAATAATTAATTAAGCAAAGGCCTAATTAATTAATCACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTACTCCGTCAGCGCGCTCGCCATCCCGGNGATCGTCGCGGCGTCGCACCCGGGCGCCGCGTGCTGNGAGATCATCCCGGCGACG | |||||||||
gi|29685605|gb|CB681880.1|CB681880 OSJNEf08J23.f OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf08J23 5', mRNA sequence TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GCTGGAGGAGGCGCCTTAGCAGCTCGGTGAGCGGAGGAGCGGCGGCCGCGGGACGGGCGGCGGACGGCGCGGCGGCCGAGGCATCCCCGGCTCGGCGAAGGAGCGACAGGAGTGGGACAAGCGGCAGACGCCACGGCTGCCACGGCACCGCGCGGCTTGGCGAAGGAGCGATGAGCGGCGAGCGGCGCACGAGGCGACGGCCGGGCGATGTGGCAGCCGGGCTCGACGGCGACTTTCGATTTTTGTGTTTTTTTTATTTTCGGTTTTTTTATTCCGTGCAGGAGAAATAATTTGACCGCACGGGATAATCTATTAACCCGTGCGGTCCACTTAACCCGACCACACGGGAAAATGATTATCTTGTGCAGTTGGCCGCCCGCCACAAAATAAACCAACCACAAGGAAACAAT | |||||||||
gi|89170989|gb|CI040266.1|CI040266 CI040266 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): TGTACAATCTTCTTCGGTCTCTCGTTACTGCGAAAACCATTTTTCCTTGCGGTCAAAATGATTTTTCTGTGCGGAGGATTTGCCCGTCTATACCCAAATGTCTGAAAAAATCAATATTTTCGCGTACGGACGGCCCAACCGTATGGGATAATGGACCGCACGGGATAATCGATTATCCCGATGCGGTCATATTATACCGCTCGCACGGAAAAAAAACAAAAAAAAAGTGAAAATGGCCGCCGCCCGCTCGCCCGCTCGCCGCCGCCTTGACGACGCACGCAACGACGGCATCGTCGTCAAGGGAGCCGAGCGACGATGTGCACGATGAGGACCACGACCAGGAGGAGATGCGACGACTGCTGCTCGCGGCTGCCGACGCCGTTGGCGAAGATGTTGGCGTGGAGCGTGTATGGCTTGCCGGTGACGTTGCCGAGGAACTCTAGGCCGATCTCGTCGTGAATCTCCCGTGGGAGCGCCGCCT | |||||||||
gi|66929703|gb|CX116551.1|CX116551 EI105B06 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): TGTCCGTGTCTGGTCGACTCCGGGTTATCCCGCGTCGGCGGGGCGGTGCGGGGCGGGCGAGCGGTGGCTCGTCGATGGGCGCGACGGCTGCTGTGGAGGCGACGCGGCGGCTCGGTGAGCGGATGAGCGGTGCCGCGGCGCGGGACGGGCGGGGACGGCGTCGTGGCCGCGGCACTGCGCGGCTCGGCGACTGAGCGGCGAGCGGCGCGTGAGGTGACGGCCGTGCGATGTGGCAGACGGCGTGACTGGCGGTGGCGGGCGGGCTCGACGGTGACTTTCGATTAATGTGTATATATTTGGTTCCTTTGTTCCGTGCGGGGGGTATAATTTGACCGCACAGGATAATCCATTATCCCATGCGGTGCACTTAACCCGACCGCACGGGACAATGATTATCCTTGTTGCGAGTTGGGCCCGCCCGGCAACTGTGAAAAATTATTTCATATTTTCCAGACGGCATTGGGTCTTAGACCGGGGCAAAACCCTCTTGCAACGGGACAGCATCAATTTTCCACCGGTACCGGACACACACATCGGTCCCCTGTACGGATAGGTGCAACGGAACTGCTGCCCACTCGACACACAGACAGCGCGGGTACATCGAACCCGCGCCACACCCAAGCCCGCCACGACCAACCAAAGGGCGGGCCCGCCACCTCGACGGATCCAAGAGCGCTAAAGTACGGCGGTACGATTGCGCACACAACATAACGCACTGCTCATAACGTGGTGCCCCCTAGCGTCACCAGATAACGTTGGGCCCAGCCCGATCCACCCAACAGGGCCGCTACACACTGCGAAAACCCATGATGTCGATTCACCGA | |||||||||
gi|117236324|gb|CT842254.1|CT842254 CT842254 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): ACCTTATCTCTTCCTTTTATTCTCCTTTCTTAGCCACACACCCAGATTCCCCACACCTCTCCCCACCTTAACTCCTCCCCCCCTTCCCCTTCTGTTGGGCCGGTGATGGCGGCGGCCGGGTGCGGCGGCGACCGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCCTCGTCGTGCACGTCGTCGCTCGGCTCCGTCAATGACAGTGCCGTCGTCGCGTGCGTCGTCAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACGTCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGCCCTCGCCGCTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGCCGTCGCGTCCGCGAGGCCGCCTCCGTCGTCCGCTGGATCTGCCGCCCGAACTCCCCGCAGCGGCCCAACAACGCCACCTTCACCTTCGTCGTCGCGGCAGGCGGGCTCGACGGCGACGACGGCGACCGGGCGAGCGTGGCGTGGTGACGACTAGCGAGGCGGCGGCGAGCGGGCCCCGCCCAGATCCGACGAGTTGCGGCGGCCGGTTGCGTGCGGGCCGGCGATTTCCGCTTTTTTTTTTTTTTTTTTGTTTCGTGCGGGCGGAATAATTTGACCGCACAGGATAATCGATTATCCCGTGTATCCCATACGGTTGGCCCATCCGCACACGAAAATATTGATTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTACCCCATTCCCCCTATGGTGAGTCGTATT | |||||||||
gi|88977087|gb|CI024824.1|CI024824 CI024824 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): TGCAGTCAAATGATTTTTCCGTGCAGTCAAAATGATTTTTCCGTGCGGATGATTTGTCCGTCTACACCCAAGTGTCTGGAAAAATCAATATTTTCGTGTGCGGATGGGCCAACCGTATGGGATACACGGGATAATCGATTATCCTGTGCGGTCAAATTATTCCGCCCGCACGAAACAAAAAAAAAAAAAAGCGGAAATCGCCGGCCCGCACGCAACCGGCCGCCGCAACTCGTCGGATCTGGGCGGGGCCCGCTCGCCGCCGCCTCGCTAGTCGTCACCACGCCACGCTCGCCCGGTCGCCGTCGTCGCCGTCGAGCCCGCCTGCCGCGACGACGAAGGTGAAGGTGGCGTTGTTGGGCCGCTGCGGGGAGTTCGGGCGGCAGATCCAGCGGACGACGGAGGCGGCCTCGCGGACGCGACGGCGCGAGAGGAGG | |||||||||
gi|88558825|gb|CI489348.1|CI489348 CI489348 Oryza sativa (japonica cultivar-group) 2 weeks after flowering ear Oryza sativa Japo TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GGATCCAACTCTTCTTATTTATTTCTTCTGATTATCATTATCATCACATTCACGGAGAAAGCAGCACTCCAACCATGATAGATGCTAGTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAACTTACTAAGGAAGTCAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTAGTCCGTCAGCGCGCCCGCCATCCCGGCGATCGTCGCGGCGTCGCACCCGGGCGCNGCGTGCTGCGAGATCATCCCGGNGAAGCGGTNGCCCTCCTCCGTGACCACGCCACGCAC | |||||||||
gi|88536714|gb|CI465381.1|CI465381 CI465381 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): CTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATAGATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACGCGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCCGTAGTCCGTCAGCGCGCTCGCCATCCCGGCGATCGTCGCGGCGTCGCACCCGGGCGCCGCGTGCTGCGAGATCATCCCGGGGACGCGGTCGCCCTCCTCCGTGACCACGCCACGCACCACCAC | |||||||||
gi|112785871|gb|EE591580.1|EE591580 FU_SHRFB-D-D7.seq Rice mixture of leaf, root, panicle Oryza sativa Japonica Group cDNA, mRNA TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): AGTATTCCCCACACCTCTCCCCATCCTCAAACAGCGCCCCCCCTTCCCCTTCTGTTGGGCCGGTGATGCGTGAGACGGGCGGGTGCGGCGGCGACCGGACGAGGCAGCGAGACCTCCTCCTGGTCGTCGTCCTCGTCGTGCACCTCGTCGCTCGGCTCCGTCAATGACAGTGCCGTCGTCGCGTGCGTCGTCAAGGCAGCGAGCGGGCGTCGTCAAGGCAGCGGACGTCGTCGTCGTCTCTGCGGGGAACGTCCCCGCCGCCAGCCACTTCCTCACCGCCATCCACAACCACCCTCTCCACGCCCTCGCCGCTGCCCCTCGCCACGCTGCTCCTGGGCCACCTCCTCTCGCGCCGTCGCGTCCGCGAGGCCGCCTCCGTCGTCCGCTGGATCTGCCGCCCGAACTCCCCGCAGCGGCCCAACAACGCCACCTTCACCTTCGTCGTCGCGGCAGGCGGGCTCGACGGCGACGACGGCGACCGGGCGAGCGTGGCGTGGTGACGACTAGCGAGGCGGCGGCGAGCGGGCCCCGCCCAGATCCGACGAGTTGCGGCGGCCGGTTGCGTGCGGGCCGGCGATTTCCGCTTTTTTTTTTTTTTTGTTTCGTGCGGGCGGAATAATTTGACCGCACAGGATAATCGATTATCCCGTGTATCCCATACGGTTGCCCCATACGCACACGAAAATATTGATTTTTCCAGAAAAAACATGAGAGAAAAAAG | |||||||||
gi|88545941|gb|CI475544.1|CI475544 CI475544 Oryza sativa (japonica cultivar-group) 15 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): CGATGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATAGATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAACTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTAGTCCGTCAGCGCGCTCGCCATCCCGGCGATCGTCGCGGCGTCGCCACCGGGCGCCGNGTGCTGCGAGATCATCCCGGCGACGCGGTCGCCCCTCCTCCGTGCACCACGCCACGCACCACCACGCTCAANGCGTCGCACCGGCACTGGCTG | |||||||||
gi|88560975|gb|CI491683.1|CI491683 CI491683 Oryza sativa (japonica cultivar-group) 30 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): AGGAAAGCTGATGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATAGATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAAAATGGGGGAGCCAAAGAAAACAGTGGTGTGGAG | |||||||||
gi|88550307|gb|CI480269.1|CI480269 CI480269 Oryza sativa (japonica cultivar-group) 2 weeks after flowering ear Oryza sativa Japo TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATAGATGCTANTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACAGTGTGCTGCAGGTTGCACCGGCCGTAGTCCGTTAGCGCGCTCGCCATCCCGGCGATCGTCGCGGCGTCGACCCCGGGCGCCGCGTGCTGCGAGATCTTCCCGGCGACGCGGTCGCCCTCCTCCGTGACCACCCCACGCACCAGCAG | |||||||||
gi|86508804|gb|CI151437.1|CI151437 CI151437 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): TTATTAAATTCTTCTNGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAGCATGATAGATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTAGTCCGTCAGCGCGCTCGCCATCCCGGCGATCGTCGCGGCGTCGCACCCGGGCGCCGCGTGCTGCGAGATCATCCCGGCGACGCGGTCGCCCTCCTCCGTGACCACGCCACGCACCAGCACGCTCAACGCGTCGCACCGGCACTGCATCGGCACTGCGGCGAGCTCCCGGCAGCACGGCTCCAGGAGCTGCCGCGGCGGCTGCTTGCCGGAGTCCAGGCGGCCCCCGGCGACGGCGCACCACCGCGCGATGTAGTTCCGGCACGATGGGACCGGGTTCCGGGACACCGCCTTCCCCACGCGGCAGTACTCGCCGAC | |||||||||
gi|88532262|gb|CI461737.1|CI461737 CI461737 Oryza sativa (japonica cultivar-group) 30 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): CTTTTTGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAACCATGATAGATGCTANTACCAAATATCGATAATTAATTATCCAGTAACCGGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATCAATTAATTACTAAGGAAGTTAACTCACGCCACCCCCAAACATGGGGCAGCCCAAGAAACCATCGCGC | |||||||||
gi|88546676|gb|CI476342.1|CI476342 CI476342 Oryza sativa (japonica cultivar-group) 30 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): CTTTTTGGAAAGCTGATGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCCCATTCACGGAGAAAGCAGCATCCAAACCTGATAGATGCCTACTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTAGTCNGTCACCGCGCTCGCCATCCCGGCGATCGTCGCGGCGTCGCACCCGGGCGCCGCGTGCTGCGACATCATCCCGGCGACGCGGTCGCCCTCCTCCGTGACCACGCCACGAACCACACGCTCAANGCGTCGCCACCGGCACTGCATCGGCACTGCGGCCAG | |||||||||
gi|29633659|gb|CB638668.1|CB638668 OSJNEa07D16.f OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa07D16 5', mRNA sequence TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GCGGCTCCGTCGGCGAGGCGCGGCGGCTGCTGGCGAAGGGGTGTGGCGGCTGCTGGCGGAGGCGACGCAGTGGCTGCGGCGGGCGCGGGACGGGCGGCGGACAGCGCGGCGGCCGCGGCAGCGCGTTGCTCGGCGAAGGAGCGGCAAGCAGCGAGCGGCGCGCGAGGCGACGGCCAGGCGAGGCGGCAGCCTACGCAACTGGCGGCGGTGGGCGGGCTCGCGACGGCAACGGCGATAAGTTTCTCCTCCGCTCGTTGACGAGTTTCTGTAGTAGTTTCACGAGTTTCGCCGTAGAGCTCGGGGGAGGCGGGCAGGCTCAACGGCTCGCAGCGGCGGCCGGATGCGGGCAGTCGACGATGTTCGCGTTTTTTTTATTTTTGGGTTTTTTTTTTGCGTGCGGGAGATATAAATTGACCGTACGGGATAATCGATTATCCAGTGCGGTCCACTTAATCCGACCGTATGGAAA | |||||||||
gi|88556883|gb|CI487246.1|CI487246 CI487246 Oryza sativa (japonica cultivar-group) 1 week after flowering ear Oryza sativa Japon TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): CTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATAGATGCTACTACCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTAGTCCGTCAGCGCGCTCGCCATCCCGGCGATTGTCGCGGCGTCGCACCCGGGCGCCGNGTGCTGCGAGATCATCCCGGCGACGCGGTCGCCCTCCTCCGTGACCACGCCACGCACCAGCACGCTCAACGCGTCGCACCGGCACTGCATCGGCACTGGGGCGAGCTCCCGGCAGCANG | |||||||||
gi|88527030|gb|CI455142.1|CI455142 CI455142 Oryza sativa (japonica cultivar-group) 25 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GATGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACCATGATAGATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATTAAGCCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAANCTGGGGNCAGCAAAGAAANCACTGTGCTGCAGGTTGCACCGGCNGCTACTCCGTCAGNGC | |||||||||
gi|88550678|gb|CI480674.1|CI480674 CI480674 Oryza sativa (japonica cultivar-group) whole body 3mM SA(salicylic acid) for 1day Or TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GGAAAAATCAATATTTTCGTGTGCGGATGGGCCAACCGTATGGGATACACGGGATAATCGATTATCCTGTGGGGTCAAATTATTCCGCCCGCCCGAAACAAAAAAAAAAAAAAAGCGGAAATCGCCGGCCCGAAAGAAACCGGCCGCCGCAACTCGTCGGATCTGGGGGGGGCCCGCTCGCCGCCGACTCGCTAGTCGTCACCACGCCACGCCCCGCCCGGTCGGCGGCGTCCCCGCCCAACCCGCCTGCCGCGAACAGGAAGGTGAAGGTGGCGT | |||||||||
gi|88552993|gb|CI483058.1|CI483058 CI483058 Oryza sativa (japonica cultivar-group) 15 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTTTTTTTTTTTTTTGAATCCAACTCTTTTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAAAAAGCAGCATCCAAACATGATAGATGCTANTACCAAATATCGATAATTAATTATCCAGTAACCCGGATAAGTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCAAAACATGGGGCAGCCAAAAAAACCAGTGTGCTGCAGGTTGCACGGGCCGTATTCTGTCAGCGCGCTCGCCATCCCGGCGATCGTCGGGGGGTCGCACCCGGGCGCCGGGTGCTGGGAAATCATCCCGGCGACGCGGTCGGCCTCCTCCGGTGACAC | |||||||||
gi|88536798|gb|CI464586.1|CI464586 CI464586 Oryza sativa (japonica cultivar-group) 20 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GGTGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATACATGCTACTACCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATCAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTACGTCGTCAGCGCGCTCGCCCATCCCGGCGATCGTCGCGGCGTCNCACACGGGCGCCGGGTGCTGAGAGATCATCCCGGCGACGCGGTAG | |||||||||
gi|117246770|gb|CT843651.1|CT843651 CT843651 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): ACATTATCTCTCTTCTTTTTTCCTTTTTATTCTCCCTCAACCACTCCTCTCTCTCTCTACCTTATCTTCTCAACCATTCCCCTAGCTCCTCCTTCCCCTCCCCTCCTCCGTCAACAGCGGCGGCGGCCCCGGCGGTGGCGGCTGCTCCCCCTCCCCTCCTCCCCGTGAGGGAGTAGCGGCTCGGCGGGAGAAGGCTGCGGCGGCGGCTCCGTCGGCGAGGCGCGGCGGCTGCTGGCGAAGGGGTGTGGCGGCTGCTGGCGGAGGCGACGCAGTGGCTGCGGCGGGCGCGGGACGGGCGGCGGACAGCGCGGCGGCCGCGGCAGCGCGTTGCTCGGCGAAGGAGCGGCAAGCAGCGAGCGGCGCGCGAGGCGACGGCCAGGCGAGGCGGCAGCCTACGCAACTGGCGGCGGTGGGCGGGCTCGCGACGGCAACGGCGATAAGTTTCTCCTCCGCTCGTTGACGAGTTTCTGTAGTAGTTTCACGAGTTTCGCCGTAGAGCTCGGGGGAGGCGGGCAGGCTCAACGGCTCGCAGCGGCGGCCGGATGCGGGCAGTCGACGATGTTCGCGTTTTTTTTATTTTTGGGTTTTTTTTTTGCGTGCGGGAGATATAAATTGACCGTACGGGATAATCGATTATCCAGTGCGGTCCACTTAATCCGACCGTATGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCGTTTTGGCCCCGGGGGGGGG | |||||||||
gi|86899784|gb|CI327579.1|CI327579 CI327579 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TACGGGATAATC-GATTATCCA EST sequence (targeted fragment marked with yellow): CGTTTTTTTTTTTTTTTTTTTTTTGTCTTTGAAGTACAAAGTTGATAGCATAACCAGCAGCTGGTCAGAAACATATGCAGCAATTAACAATAATAAACACGAGTTTTATGTCAGGATATTATGGATAATCTGATTATCTTGTATATGTGTGTCATGATTTCCCCCCAAAATGTTTCTTGTGCAGGCTGTGGTCACGATGTTCAAATATCAACAATTCCGGCACATCCAGGCACCTGGGTGGCACCTGGGGTGGAAATGGGCAAAGAAGGAGGTCATTTGGTCGATGGTTGGAGCAAAGACCACTGACAAGGGCGATTGCTCAAAGTTTAAGGGTGGCACGCCCCACTGCTGCAA | |||||||||
gi|88530055|gb|CI457390.1|CI457390 CI457390 Oryza sativa (japonica cultivar-group) 30 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): CTTTTTTGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATAGATGCTACTAGCACATATGGATAATTAATTATCCAGTACCCGGATAACTAATTAAATAATTAATTAAGCCAAAGGCCTAATTAATTAATTANTAAGGAAGTTACTCCATGCCACCCCCAAACATGGGGCAGCCCAAAGAAACNAGTGTGCTGCAGGTTGCACCGGCCGTAGTCCGTCAGNGCGCTCGCCATCCCGGCGATCGTCGCGGCGTNGCACCCGGGCGCCGCGTGCTGCGAGATCATCCCGGCGACGCGGTCGCCCTCCTCCGTGACCACGCCACGCACCAGCACGCTCAACGCGTTGCACCGGCACTGCATCGGCACTGCGGGGAGC | |||||||||
gi|88559211|gb|CI489769.1|CI489769 CI489769 Oryza sativa (japonica cultivar-group) 35 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GATACTGGAAAGCTGATGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCCAAACATGATAGATGCTACTACCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAANATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTAGTCCGTCAGCGCGCTCGCCATCCCGGCGATCGTCGCGGNGTCGCACCCGGGCGCCGCGTGCTGCGAGATCATCCCGGCGACGCGGTCGCCCTCATCCGTGAACACGCCACGCACCAGCANGCTCAANGTGTCGAAACGGCACTGCATCGGCACTGCGGCGAGCTCCCGGCAGCACGGCTCCAGGAGCTGCCGNGGCGGCTGCTTGCCGGAGTCCAGGCGGCCCCGGCGACGGCGCACACGGGCGATGTAGTCCGGCACGATGGGAACGGGTTCCGG | |||||||||
gi|88454839|gb|CI511811.1|CI511811 CI511811 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GGAAAATGAATATTTTTATATGCGGGCAGCCCAACCGTACAGGATAAACATTTTTCCATACGGTCGGATTAAGTGGACCGCACTGGATAATCGATTATCCCGTACGGTCAATTTATATCTCCCGCACGCAAAAAAAAAAACCCAAAAATAAAAAAAANGCGAACATNGTCGACTGCCCCCATCCGGCCGCCGCTGGAGACGTCGAGCCTGCCCGCCTCCCCCGAGCTCTCCGGCGAAANTCGTGAAAATANTACAAAAACTNCT | |||||||||
gi|29686439|gb|CB682714.1|CB682714 OSJNEf10F06.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf10F06 3', mRNA sequence TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): TCCCCCGTCAACGGCGGCGGTGGCCCCTCCCCTCCTCCCCGTGAGGGAGCAGTGGCTCGGCGGAAGCAGTGGCTCAGCGAGAGCGACCAGGAGGAGGAGAAGGTGGCGGCGGGAGAGGGCACGGGGGCAGCGTCGGCGGCTCTATTGGCAGGGCGCGACGGCTGCTGGCGGAGGTGACGCGGCAGCTCGGTGAGCGGAGGAGCGGCGGCCGCGGGACGGGCGGCGGACGGCGCGGCGGCCGAGGCATCGTGCGGCTCGGCGAAGGAGCGACAGGAGTGGGACAAGCGGCAGACGCCACGGCTGCCACGGCACCGCGCGGCTTGGCGAAGGAGCGATGAGCGGCGAGCGGCGCACGAGGCGACGGCCGGGCGATGTGGCAGCCGGGCTCGACGGCGACTTTCGATTTTTGTGTTTTTTTTATTTTTGGTTTTTTTATTCCGTGCAGGTGAAATAATTTGACCGCACGGGATAATCTATTAACCCGTGCGGTCCACTTAACCCGACCACACGGGAAAATGATTATCTTGTGCAGTTGGCCGCCCGCACGTGAAAATATTTATTTTTCCAGACGCGTGGGTCCAGACGGGGAAAACCTCCGCACGGAAAAATCAATTTGACCGCACGGAAAAAATAGTTTATGTAGTGGTGATTCTCTCCGCACGGAAAACGGAGCGGTCTATTATCACGTAATTTTTTTTAAAAATGGATCAAAAAAAAAAAAAAGGAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTTGTC | |||||||||
gi|88544229|gb|CI474306.1|CI474306 CI474306 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GATGAATCCCCCTCTTCTTATTTATTTCTTCTGATTATTATTATNATCACATTCACGGAGAAAGCAGCATCCAAAAATGATAGATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTACTTAAATAATTAATTAACCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCCACACATGGGGCACNCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTAGTCCGTCAGCGCGCTCGCCATCCCGCCCATCGTCGCGGNGTCGCACCCGGGCGCCGNGTGNTGCCAGATCCTCCCGGAGACCCGGTCGCCCTCCCTCCGTGACCACCCCAC | |||||||||
gi|163926695|gb|EG713711.1|EG713711 Os6CPREST0156 6cm rice panicles Oryza sativa Japonica Group cDNA clone 6CPR-A3H05S, mRNA seq TACGGGATAATCGATT-ATCCA EST sequence (targeted fragment marked with yellow): GGCCATTACGGCCGGGCGGGATAAATCGATTATCCCGTGCGGTTGGACCGTCCGCACGCGAAAATGCCGATTTTCCCAGACGATTGGCTCCAGGCGGGCCGGACAACCGCTCGGAAAAATCAAAATGCCCGTTTGC | |||||||||
gi|88559574|gb|CI490164.1|CI490164 CI490164 Oryza sativa (japonica cultivar-group) 35 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GGAAAGCTGATGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATAGATGCTACTAGCAAATATTGATAATTAATTATCCAGTAACCCGGATAACTAATCAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGNCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTAGTCCGTCAGCGCGCTCGCCATCCCGGCGATCGTCGCGGCGTCGCACCCGGGCGCCGCGTGCTGCGAGATCATCCCGGGGACGCGGTCGCCCTCCTCCGTGACCACGCCACGCACCAG | |||||||||
gi|88544707|gb|CI472830.1|CI472830 CI472830 Oryza sativa (japonica cultivar-group) 3 weeks after flowering ear Oryza sativa Japo TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATAATCACATTCAGGGAGAAAGCAGNNATCAAACATGATAGATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATCAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACGGGCCGTAGTCCGTCAGCGCGCTCGCCATCCCGGCGATCGTCGNGGCGTCGNACCGGGCGCCGCGTGCTGGGAGATCATCCCGGCGACGCGGTCGCCCTCCTCCGTGACCACGCCANGCACCAGCACGCTCAACGCGTCGCACCGGCACTGCAT | |||||||||
gi|88522674|gb|CI449505.1|CI449505 CI449505 Oryza sativa (japonica cultivar-group) 40 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): CTCTTTTTTTCTTTTTTTTTTTTTTTTGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATCCCCGGAGAAAGCAGCATCCAAACATGATAGATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTATAGATGTCCCGAATCAATTAAAATCTTAACCTGAGCGCATTTAGTCACGCACCGGACTGGTATGTGTTCTCCATAGACTTCAGGGCATAGCAGTGAACCCCACATCGAACACAAAGCCACGGTATACGCCATAACTGTACCCAGGAACACCATCAACCCAGTCCCATTTGCCACCGCTGTTGCCTAGCTCATCCTCCTCCCANATTGCCAGCTTNCCTCGCACCCGGTTTCCAGCAAAACACACCTTGCAATCACCGCCAAACA | |||||||||
gi|88544822|gb|CI472953.1|CI472953 CI472953 Oryza sativa (japonica cultivar-group) 20 days after pollination pistil Oryza sativa TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): CTGGTGAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATACATGCTACTAGCAAATATCGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATTAAGCAAAGGGCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCACCCCCAAACATGGGGCAGCCAAAGAAACCAGTGTGCTGCAGGTTGCACCGGCCGTAGTCCGTCAGCGCGCTCGCCATCCCGGCGATCGTCGGGGCGTCGCACCCGGGCGCCGCGTGCTGCGAGATCATCCCGGCGACGCGGTCGCCCTCCTCCGTGACCACGCCNAGCACAACCACGCTCAACGCGTTGCACCGGCACTGCATCGGCACTGGGGGGAGCTCCCGG | |||||||||
gi|88538982|gb|CI468053.1|CI468053 CI468053 Oryza sativa (japonica cultivar-group) 2 weeks after flowering ear Oryza sativa Japo TACGGGATAATCGATTATCCA EST sequence (targeted fragment marked with yellow): GAATCCAACTCTTCTTATTTATTTCTTCTGATTATTATTATCATCACATTCACGGAGAAAGCAGCATCCAAACATGATAGATGCTACTAGCAAATATNGATAATTAATTATCCAGTAACCCGGATAACTAATTAAATAATTAATTAAGCAAAGGCCTAATTAATTAATTACTAAGGAAGTTAATCCATGCCAACCCCAAACATGGGGCAGCCAAAGAAACCANTGTGATGCAGGTTGCACCGGCCGTACTGCGTCCGCCGCGCCTCGCCATCCCGGCGATCG | |||||||||