miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TACTCCCTCCATCCCAAAATG
species: Pseudoroegneria spicata
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|207463889|gb|FF360779.1|FF360779 BG02035A1D06.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B 

TACTCCCTCCATCCCAAAATG
||||||||||||||||   |.
ATGAGGGAGGTAGGGTACAAT

EST sequence (targeted fragment marked with yellow):
ACGCATTTTTNNTTTTTTTTTTTATAGAAGAGTAACACGTTGAAAAATTTGCTGCCTCACTACATGATAGAATAAAGACGCACATGCGTACATACTTAAAAGTTACTTCCTTCGTCTCAATTGCTAGATACAATCGTTTGAGCGTCAATTAACATGGGATGGAGGGAGTACAAAGCTAGAACAACCATCCTTTTCTGTAAAAGTCCGACTAAGAAGCGGAGACATCAGCGGTTGGTTAAATCGTGGCTTCATGCACTCAAACTCGTAGGAACAAACACACACGAACAAAAAGAAGTCAAAACAGATGGCGGCTAATATAATGATTTGCCAGAGATGGAGGGAAATTTTCTTCTTGCCTTCATGCCTTCAAATATGTCTCATGAGGACATTGTACACTTCACCATCCAGCTATTTAGGGTATAGCTCACATTTAAAACCTCCATCAATTCTCTTTTGAGTTATTTCTCTTTTTTCAAAACTTGCAGAACAGAATCTGGTGTTCTCCTTCACTTCAAAGGCCTAGTGAATTCCTTTTCTTTGATCCATGCAAATCTCAGAGAGCAGTTAACATTACATATCATGCTAGCAAAAAACCACGTAGCACTTCTATATCAGGAGGAATACATAAGCAATTCCCGGTTGGCCATTCACGTGCACATATATCAAACTGCGTTCAGATATGTGCAGGGGGGCCATGGGGTGCGATAGAGGCATAGAGCTGGGCCGCGGCGCAGCTTGTGGAGGGACGGCTTGGAGGGGCATCACGGCCGCAGCTTCAGCATATGGGGGAGTTGG


gi|207489037|gb|FF341423.1|FF341423 BG02009B1D10.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B 

TACTCCCTCCATCCCAAAATG
||||||||||||||||||||.
ATGAGGGAGGTAGGGTTTTAT

EST sequence (targeted fragment marked with yellow):
CTGATTGTCATGCTGCGTGAAAATTTGTTTGGAGACCTTCTGATTTCACTTTTTTCTATTTAGTTAGCTAGAAAACCAGCTAGCTGTGAAGTCTGAGTTTTCAAACTGATCCGCAGAGGTGAAGAATTCTAAAAGCTTGTTTGGGAGCTTCGTTCTGGATAGAGGAGGACTAATTTGAACTAAAACCACGACACTTATTTTGGGATGGAGGGAGTACCTATGCTCCATCCTTTTTTTCAACTCGTTGTCCAGTTCTAATTATGTTCTGACTTTCCTTGAAGAAACTTTAAGTATTCTGATTATATTTGGGCTGTTCATTGATCAGCACTGTTGGAGGTTTTATTGGAAGATTGTAGAGTTGGAAAGTCTAGCAACACGTCAGTTGGTGGGGGGATTTGCTGAAGCAAATGGATCATCTGCTTCCCGGACGGTTTTGACTTCTGATTAATCCTGATCCTGAAGCATATTACTTGATTTGGTCTTTGTGGCAGCTTTCAGTTTGGACTTGCATTCAGTGGTTGTTTGGAGTTAGTAGTGTGCACATCTGATTCTTCCAACCGTCCTGAAGCATCTTGCTTGGTTTCTGTTGTGTGCCATCGGTATCTGCTTAAACCTGCATGTGGTTTGGATGGAATATGATCTCATCTTTTGCTCCGAATCAACAATGGNNATACCAGTCCATACTCAAAGTTTGTATAGGAGATTATCNNNTTTTGATTTGCCTATTAATCACTACA


gi|207372147|gb|FF350323.1|FF350323 BG02013B2C08.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B 

TACTCCCTCCATCCCAAAATG
| ||||||||||||||||||.
ACGAGGGAGGTAGGGTTTTAT

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTATCGAAAAGAGGAGCCAAATTAGTCGATGCTATTACACAGCACTCGGTGAGACCAAAACAGCTACTCCATCCGTTCCAAAATAAGTCCGTCCCAAAATAAATGTCTCAACCTTAGTACAACCTTATTTTGGGATGGAGGGAGCACTACGGACGAACAAATATTAGGTACAGCCACGGCGAAGCCTTGCAAATACTACTACGACACAGAAGACTCGCTTTATTAAACACAGGCTGAGAGTCTGAGAGACGAACCTCCCAGATTACATGACATAGCCTGACAAGCCAACGGCGGTACCACGTGACAGATCAGCACGGAAGATGCTGCGGTGGATTAGATGGGGATTGCGCCGGTGACGCGCGGGTACACGACCCTGGTCGGGTGACCCATGATGCGGCGGCCCTTGCGGTGGCGGAAAAGGTACACGGCGGCGCCCAGCGGCCACTCCACCACCCCGGCCACGACGAGCGCCACGAATCCCAGCGTCGGGCCGACCACCTTACACCGGCACGGGTTGCTCCTCGTCCCGCACTGCACGCAGATCGGCACGAACGCCATTGTTGTTGCTGAACCAGCCTCTGCTAGTGCTGTCAAATAGTAGAATGCTCGTGTTCGAAGTTTGATGGATGGATATATGCGCTAGAGATTGATGGTCCGCT