mature miRNA: TACTCCCTCCGTCCCATAAAT species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|270390030|gb|GT769453.1|GT769453 CCXF7587.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo TACTCCCTCCGTCCCATAAAT EST sequence (targeted fragment marked with yellow): CGCCGCATGACGACGATGACGAAGGGGCCAAGATGCTCGACAGCCTCGAGGATGACGGATTCTACCACCGTTTTAGCAAGCGTGGTCGTCAACGATCTCCGGTGCTGCTTCACGACGATGAAAAAGGGGGCACCAAGGTTGTATGCCTGACCAAGATGCTCTCCCCGAGCGACCGCCTTGAGGACGACAGATTCTACCAGCACTTTCTGGAGAATGTCACGGAAGAGGCACGCAAGTACGGCGACCTAGTGAAGGTGGTGATCCCGCAGCCTGGACCTGGCATCGAAGGCAGCGGGGCTGCTTCCGTGGTGGCCGGAGTCGGGAAAGTGTTTCTGGAGTACACGCACCTCGCCGACGCAGCCTGGTGCAGGAGGTGGTTGGATGGGATATGGTATGGCGGGAAGGTCATCGCTGCTGCCTTCTTCCCTCAGGACAGGTTTGATGTTGGGGACTATGACTACAATGGATAAGATTGTAGATGGGTGGTATATGGTCAGAAATCCATATATTTGCTAGTTACTATTACCTCTGTTCCTTAATGTAAGATGTTTTGGTAAACTAAATTAGTTTGCCAAATCGTCCTATATTATGGAACGGAGGGAGTAGTAGTTAATCTCTTATCACTAGCGTCCATAATGCTAAATGTATCTTAATTTGGAAGCACATTGATAAGAAGATGATGTTGCAAGTTCCATATTATTATATAATCGGTTGGAAGTTTGGTAC | |||||||||
gi|270479221|gb|GT859429.1|GT859429 CCYP13232.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TACTCCCTCCGTCCCATAAAT EST sequence (targeted fragment marked with yellow): AATCTTTACAAAGGCTAAGGCATTGAAGCGTGCAGTTGCAATGCAACGCCATGAGGCCCTCAGCCAGCATATAGCTCAATTGGAAAGCAATATGAAGCAGATGAAGTTGATTTGGGTATGGAGGACTACGATGAAGAAGACGAGGATAGCTCAGATTCAGAAAAGCGATGACAATACAGCAGCCTCCGCAAGCTATGACGAGGACCAAGAAGATTTTGATGAATCAAGTGATGAAGATGAATACAGAGAGTATGATAATAAAGATTAAGGTGCCGAGATTGAGAGTTAGTGTGCAAAAGAAATTATATGAAATTCTAGGCGATGTTAATCTCCACAGATTATATTGAAGCCCATTGGACGTTCTTGGAAGCCAGGAACCAAGAGGATGTCCGATGTTGCCTTGTATATCTACGTCTCTGTTGTGATGCCGAGCTGTACTCCCTTTGATTTGTTCTTGGCAAAAGGATTGTTGGATATCTGCCGTTGAAGTGTCAACTGTAGGTTCCTCGCAAAAAAAAAAGAAAAAAAGAAGTGTCAGCTGTAGGTTGGGCATAAATGGTCCTCCCCCCTTTGTATTTGTTGGACGGAAGGAGTATACCTATCGGTGAGGCAGAATCACGGTATACGCTCCTTCCTGCTGCAACCATATATATACCAGAATAAATTACTCCCTCCATCCCCTATTAAGTTGTGAACAATTAATATGGGACGGAGTGAGTAACTTAGATC | |||||||||
gi|270467352|gb|GT850609.1|GT850609 CCYP803.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA clo TACTCCCTCCGTCCCATAAAT EST sequence (targeted fragment marked with yellow): ATCTCGAGTGGCAATTCTGCTAAGCAGAATGACAGGTTCTGAGAGAGAATATATTCTGGCAGCACTGGTCAGACCCTGAAATGATCTCCTGAAATTGGCAGCTCCAAGTGATCTACCGGATAGATGTGAATCCTTCAGTTGCCTCTTCTGATAAATACCGACCTTGCAGAAGTTGAGCCACTGTTCCATACATTTAGCTGCAAGAACGCACTGAATTAGACGTGCTATGAGGGCCCTTGTACTCTTACTCTTTTTGCCTTTGCTTCCCCCCTTATTTCTCCTTGTAACTATGTTGTTTATTAATACTCCCTCCGTTCCATAATTCTTCTCTCAAATTTGTCCAAATATGAATGTATCTATTCCTGAAAAGTGTCTAGATACATGTAATATTTCGACAAGAATTATGGAACGGAGTGAGTATATACTTATACTGTCGGAGTTTTTTCTACAGTTTTACTGAATTAGACGAGTGCACAAGTGAAACCGAGATTGATATTTTTGCGAGCCTTTCCAGATACAGTCATGCAACTAAGCACTTTATTTTTTTGAGCCCTTCGACG | |||||||||
gi|270456994|gb|GT839495.1|GT839495 CCYP1854.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TACTCCCTCCGTCCCATAAAT EST sequence (targeted fragment marked with yellow): GGTTCTCAGATCCTCATGTCACCAAGACATATGGTCTGTCACCAGACAAGGAGACACTAGAAATCCTAGCTCATGTGGCAAATCAGAGAGGGGTCGAAGTCTTTGGAAAGATATTCTATGGTGACCCGACGAAGAAGCTGTGCGAGGCGGTTGACGTGGTTCCCCTTAGCTGCCTGGTTATCGGAAGCAGAGGTCTGAGCACACTGAAGAGGGCTCTGATGGGGAGCGTGAGCACCTACGTTGTGAACCACGCGACCTGCCCAGTCACCGTTGTGAAGGAGAACGCATAGCTGCAGCTTGCTACCAATGACGAAGATATCGGCCGTTTGCAAAATCTCAAAACCAGAAGGGATAAATAAGATAATACTGTCTTCAAGCAGTAGCTATAAGAACAAATACTACCTCCGTTCCATAAAGATTGGCACGGCTTTGAACTGAGTTAGTTCAAATCCGTGCCAACCTTTTATGACACGGAGGGAGTAGTATATATGCGGTAGCATAATAAGAGTCAATAATAGAAGAG | |||||||||
gi|78020604|gb|DV488991.1|DV488991 5545_F09_K17Z_069 Brachypodium distachyon root EST library Brachypodium distachyon cDNA clone TACTCCCTCCGTCCCATAAAT EST sequence (targeted fragment marked with yellow): CCATTAAGGGGGAACATGAGTGATGTTAATAGTTGGTGCATCCCTTAAGATTGTAATGTAGTCCATCTTAAACTATTTAGCTAGCAGCTATGGATGTATCACGAGTGGTTTCAACATAGTTTGTAATATCAAGTTTGCACTAAAACAGCGACAAGTATTTAGGAACGGAGGGAGTAATACTTTCTGGTTATGTTTGTCTGCCCTTGATATGTTAGGTTTGGCCAATCCATTACTCGAAAAAAGTTAAGGATGCTTTTGCAGGGCCTTAATGCTTGTTTCTGTTTGTGAAATCAGAAATTATCACATGTAAGGCAAGTGATTAGGAGCTTTCGGAGTTCTTTGGCATGGTCATGATTGACATATTGTATTTGTTATCATTTCAACCTCTTCGGAGAAACATTATGCTATTTAACTCCAGTCCTTTTATATACTGATGACATCCTAGTAGTTTAGTCTAGGGCTGAAAGCAGTACAGAATCACATTAATTTCCCAATGCAGCGCTTCTTTGGCAACAAAAGAAACATTGCAAAGGACAAGCATATTTTCTGCTGCATCATCTCATAATTGCATCACTGCCTTATTTGCTGATGACCAATTGTTATAGAATTTATTGAGAAAGTACTATATGGTGATTATTCTGACGACATTTACAGCTTGATACTATCCTTGGGTTTAGATCACAATGATTCAGCCAATGAAGCCAATCAAAGCATTTGTTTTGCCCAAGTTGTATGAGTGCGGAATTCTAACGTTTAGTCTGAAAGAACAAAGCATGTAGGCTTGCTCTCAACTTGAAGGTCCTTTATCTGTTTGC | |||||||||
gi|78017502|gb|DV485889.1|DV485889 5509_G04_M07RZ_020 Brachypodium distachyon root EST library Brachypodium distachyon cDNA clon TACTCCCTCCGTCCCATAAAT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAGCTGCAAAGCTACTCCTTGCTGATACGATTTCAAAGGATTACCTTGGCCCTGAGATTGTTTCGCACTATGTATCTCATGGAGCAAGTACGACGGAGATCATCAAGCATCTCATTACTGCGCTAAAGAAAAATGCAGACAACGATATAGCTGCTCTATTCTTTGAGGCTCTGAGACGGGTAGGTACTTTGTTTTTATTCTGAATGCACAAAATATTTCTTCATGAGTCCTACAAATTGGTGATTAATATGGTGTCTTCTGTATTAGCATCCAAAAATATGCATTTGTTCTTCTCTATGATTATTAGCTTATTACCAATCACAAAAGAAATACTTCCTCCGTCCCATATTAAGTGACTCAAATTTGTCCAAATATGGATGCATCTATACCCCAAAAGTGTATAGATGCATGTAATATTTCGTCACTTAATATGGGACGGAGGGAGTAATAACTACTCCCTCTGATCTTAAATTCTTGACTCAAATTTGCCCAAATATGGATGTATCTATTCTTAAAAAACGTCTAGATACATGTAATATTTCGACAACAATTTAGGATCGGAGGGAGTAGTAACTATAGCAGAGAATTAGACCCATCCTACGTTATTGAGGATGCCATTACTGATTGAAAATCAACCTGATTGTAAACCAGGAACAGTTAGGGATGTACTCGTGCCTCTGTTGGTAAAAGCGCCATGCTATCATCATTGTACCTTTTGATGTCTGTTTCATCATTTCCAATTATTTAAAGATTTCAGTGTCTGACAGGAATTTAAGATAAATACTTTTTACAACTGCCCTGGATTTCTATTCTCATTTTTGCATTTGATTTTTAATCATTGTTT | |||||||||
gi|270470362|gb|GT852087.1|GT852087 CCYP8801.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TACTCCCTCCGTCCCATAAAT EST sequence (targeted fragment marked with yellow): TTATTTTTTTTCCGGTGGGAAGAATTATTAGGAGGCCTATTAACATAAGGCCTAGAAATCTTTTAACAAAAGGCTAAGGCATTGAAGCGTGCAGTTGCAATGCAACGCCATGAGGCCCTCAGCCAGCATATAGCTCAATTGGAAAGCAATTATGAAGCAGATGAAGTTTGATTTGGGTATGGAGGACTACGATGAAGAAGACGAGGATAGCTCAGATTCAGAAAGCGATGACAATACAGCAGCCTCCCGCAAGCTATGACGAGGACCAAGAAGATTTTGATGAATCAAGTGATGAAGATGAATACAGAGAGTATGATAATAAAGATTAAGGTGCCGAGATTGAGAGTTAGTGTGCAAAAGAAATTATATGAAATTCTAGGCGATGTTAATCTCCACAGATTATATTGAAGCCCATTGGACGTTCTTGGAAGCCAGGAACCAAGAGGATGTCCGATGTTGCCTTGTATATCTACGTCTCTGTTGTGATGCCGAGCTGTACTCCCTTTGATTTGTTCTTGGCAAAAGGATTGTTGGATATCTGCCGTTGAAGTGTCAACTGTAGGTTCCTCGCAAAAAAAAAAGAAAAAAGAAGTGTCAGCTGTAGGTTGGGCATAAATGGTCCTCCCCCTTTGTATTTGTTGGACGGAAGGAGTATACCTATCGGTGAGGCAGAATCACGGTATACGCTCCTTCCTGCTGCAACCATATATATACCAGAATAAATTACTCCCTCC | |||||||||
gi|270408367|gb|GT789402.1|GT789402 CCXG4226.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG42 TACTCCCTCCGTCCCATAAAT EST sequence (targeted fragment marked with yellow): CGCCGTCTCGTCCCAATCGCTTCAGCTCCTCACCCGGAACTTGAGATGCTCCACTCATGGCGGAATCTGGACCGTGTCTACCGATCTGCTTATGAGTACCCCTGGATCCTCATGGCAAGGAGCGTTATGTATAGATCTGCTTGTCAGTACCCCTGGATCCTCATGGCAAGGAACATTGCAGCGGGGCATCCCAAGCTGCGGTACCGCCACTCCCCTTATGACATTGATCTTTTCTGCATCTCCAATCATGTCCCAGTTGATAAGCATTTTGCCATCACTAAGAGGAAAATTATGAGAGAAATACAAGTGACGAGGATGAGAGACTATGTGATGCCCTTCGATGCCATCGAGGGTACCAGCCATCGTGATGGTTCTATATACAAGCATTTTGCTTTGTTAAAATATCATCGTATTACTGAACCTGATGAGACACCACTGGAGCCGCCCACTTGCCTGCCTGGTCGCAAAAGGTGCCTTGTGCATGGGTTCTCCCATTGAGATGACTTGCCCTAAACGAGGCATCTCATTTGCTTGCTCCGTTCTTGTTGAGTTCGACATGAGGATTAAGAAAGGTGAGGAGGAAGATGATGTAAAACCTACAGTACAGATCTTCAATTAAACGTGGACTCTGCGTTAATTTTTTTTTAAAAAAAGCCAGTGTCAATTAATTAGGGACGGAGGGAGTACCATCTGCAATCGGTTGTCTACACT | |||||||||
gi|270459841|gb|GT841600.1|GT841600 CCYP3062.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TACTCCCTCCGTCCCATAAAT EST sequence (targeted fragment marked with yellow): TCAAGGGTTATTTTGTCACCAGTTGATTCTGTTGCTAATACCTACCGTGCTCTCTTACCGGAAGGCACACCTCTCGAATTTCAGCGGATACTTGAGCTCAAGGGCTTGAAGAAAGCGGACCAACAAACTATACTGGAAGATTTCAATAAGCATAGCCCCAGCATCAAACACCCTACCATCACTCCGACAGTTGCACCACCAGTTGCTACTGCATCTGTCCCTATTGCACCAGTTGCAACTCAAGCCGTTTCAGTAACACCGAGCATGTCCGCTTTGACGGGTGCTCTGGCCAACCGAGAGGATGTGCTCGCCCGTGCTGCAGCACTTGGACGAGGCGCTGCCACGACAGGGTTCAAGAGGTTCCTTGCATTGACAGAGGCAGCCAAAGATCGGAAGGACGGGCCGTTCCGCAAGCTTTTCAATGCATAAATTTTTGCCATTGTTTGTTTATAGTTCGCGTCTCCCCGGTGCACATAGCTATAGGAAATTCTTCCCACACCATGTTCCTTACCATCAGTGTACAATGGTTAGATATTTTTGACACTCCCCATTTTGTGGAGAACTGATAGCTCAGCTGTACGCCTGTAGTCCCTCTGTCCAACAAAGGATGTCTTAAATTTGACTAAATTTGAATGCATTTATATACTAAGTCATGTCTAGATACATTCAAATTTTGACAAACTTGAGACATCTTTTATTGAACGGAGGGAGTGCTAAAGACATTTGATCGTAGGAATAAGATTCCAGTGTCTGTTCTTTTTATG | |||||||||
gi|78005275|gb|DV473663.1|DV473663 5463_B04_C07ZE5_030 Brachypodium distachyon developing spike EST library Brachypodium distach TACTCCCTCCGTCCCATAAAT |