| mature miRNA: TACTCCCTCCGTCCCTAAAAA species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|36009125|gb|CA280799.1|CA280799 SCVPFL4C11D09.g FL4 Saccharum hybrid cultivar (mixed) cDNA clone SCVPFL4C11D09 5', mRNA seque TACTCCCTCCGTCCCTAAAAA EST sequence (targeted fragment marked with yellow): CGACCGATTGATGCACATTGAGCGCAAGGCCTAGCTAGCTATAGTGGTCGATCGTACGTAGTAAGTACCCGCTGGGGCTACGCAAGCTGAAGCATACTCCCTCCGTCACATAATACCCGTCGTTTTTTGTCGTGCCACAAGTTTAACTCGATTTGTAGAAAATACGTGCAATATTTGTATCTCCAAATAAATTTATTAAAAAACTAGATTCAAAGATCTTTCCAATTATATTTTAAATATTAATATTTTTTAATATATATTTTGTCAAAGTTGTTTCTTGGAAAACAAAAACGATTGATATTTTGGTACGGAGGGAGTACGCATGGTTCCAATAGAGACGGTAGACACGGTACACATCGGAACATGCATGGTCATACCGTGTTATATACTACTGTTTAATTATTATCAGTTCATTTGTTTCTGGCATGGCTTAGATGCCCGATTCGGGGCACTGAATAGCTACAGTGCGCAACAAATGCGTACTATAGTAATTTTGTTTTTATATGGTAAAAATTGTCTAAATTTTGACTAATTAGGCTCGAAATGTTCGTCTCGCAAAGTATAACAAAAATGTGCAATTAGTTTTTGATTTCATCTACATTTAGTACTGCATACATATGCCGATATTTCGATGTGACGGAGAATCTTCTTTTTGCATAGTAAAATTTAGGGATGAATTTAGGGGCTTG | |||||||||
gi|35981239|gb|CA271544.1|CA271544 SCBGLB2074F02.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBGLB2074F02 5', mRNA seq TACTCCCTCCGTCCCTAAAAA EST sequence (targeted fragment marked with yellow): CGGACGCGTGGGCGGACGCGTGGGCAAATTTTTTGTATAAATATCATTTATTTTGTTATGACTTATTTTATCATTAGAGATACTTTAATAATGATTTATTTATTTTATAATTTACACAAAATTTTTAAATAAGACGAACAGTCAAACACGATGTCTAAAAGTAAAAAACGTCACTCTTTTTGGGACGGAGGGAGTATATAACTTTTAAGTTATTTAGTTTATGATTGCTGTGTCTTGCTTTATCGGCTACTGTTTTTTTAATTTTCATGCTATAAAATGGTGGAATTGCCTGTGGAGTTACATGAATGCTTTCTACTGACTTTAGTTGAGATGTGTGCCAATGTATTAGGTCCAATTCCACTTGCTATACCATCTTTTTTCCTTATTTTACTGGGGATTGTTGTTGTTGAATAACCTGCTGATAATACTGCTCCTTCTTTTGTGCTTTTATAATCTGCCAGAGGTAACTAGTTAACTATAAAATCTGAGAGGATGCTACCATGTGAATTATGTTGTTCCTTTTTCCTAATTGGGTAAAATGCGCTAATGGTTTCCTATGCCTAAAATTGAATTTTGAGTTGACTATGTTTCTTATTGCGATGTTTGGGGCACATAAGTATAGTGCTTCTATTAACTCTTGGGGGAGGCTAAAATCTTCGGGGTAATTAATGGGTTG | |||||||||
gi|36000075|gb|CA277692.1|CA277692 SCSBSD2030D10.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCSBSD2030D10 5', mRNA seque TACTCCCTCCGTCCCTAAAAA EST sequence (targeted fragment marked with yellow): AGCTTTTATGGGAAGCGTGCCAGTTAAACTGACTCAAGTTTGACCAAGTTTACAGTAAATAGTATTAACATTTATGCCTCCAAATAAATTTATTAAAAAAATATATTCTATAACTAATCTAATGATACTTATTTTATATCATATATATTAGTATTTTTTTTTTATATAAATTTAGTCAAAGTTCAAACTGTTTGACTTCTCGAAAAGCGAGAATTGCATGTTTTTATGGACGGAGGGAGTACTATGTATTATTCGGGTCCAGCTCATCTGTGAAATCATTTGTTCTTGTGATGTAGTACTATATAAATCAATGTAACGTAAGGATGGATTTATC | |||||||||
gi|36005920|gb|CA279694.1|CA279694 SCCCFL8002D03.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCCCFL8002D03 5', mRNA seque TACTCCCTCCGTCCCTAAAAA EST sequence (targeted fragment marked with yellow): ATAGAATATCGTTTTAGAGTATCCAGTGCAGCAGTTTTTACTCTATATTCATACTCTAAAGAAAGTATTATTTTAGGGTACCCGCTGCCGGCATGTGGGCGCGCACAGCTTTCCATGCAGCGCTAGTCGACCCGTCCCTTTCGCCCTGCTGGACTGTGAGGCTGCCGCCGATTGCTGAATGCGATTGGGCGCTATCAGAACAACGCCGGATCAAAAGTCACAAAAAAAAAAACAACGCCGGATCAAATTGCCATCACAAAACAGAAGTCTTTCTCACCTTCCCAGAAGTCAACTTTTTTTTAACTTTAACCAATTATATATAAAACAATATTAATATTTATAATATATAATTAGCATAGTTAGGTAGATCGTTGAATATATTTTCATAATAAACTTATTTGAAGATATACATGCTGTTTTTCTGCAAAGTTAGTCAAAATTAAAAAAGTTTGACCTACACGCGTTCCATGGTGACTTTCTTTCTAGGACGGAGGGAGTAATTCTTAAAAAAAAAAGGAAGGGGGTTCTACGTGGTATTGAATCATTCTGCGTGCCACTATATTAAACCTAAGCTAACAATCCGGGGTATAATTAATGGTATGGGACATATAGCATTGGTGAGTTTTCTTCTTCTTTTAAACATAATTAGGAGCTTCTCCTGCGGGTTGCTTAAACAAAGCTGA | |||||||||
gi|36041242|gb|CA289384.1|CA289384 SCAGFL8004E04.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCAGFL8004E04 5', mRNA seque TACTCCCTCCGTCCCTAAAAA EST sequence (targeted fragment marked with yellow): ATTTATTTGATATCATAAATATTAATATTTTTTTATCTATAATTAATTGAACTTGAGATACTAAACTATGACACTGTGCTAGAATTGCATGTTTTCTTGGACGGAGGGAGTACATTACATTGAAGGAGGTAGCCTGATACAGGGTGCTAGTAAAATAATTTTAATGAATATCAACATCCATCTGAAGCTAAGCCATGACTAGCGTTAAACTTTTCATGATGCCTATTGTGCAAGACATACAGGTAAAAGGGTCAATGCTAAATTGCTAGTGAAATAGACAATCACACAATGATATTACCTTATTTTTAAGCACTGCCTATTAGGTCTTACTTCTATTCAAGTTTTAAGCATTCTCAGTTGTGTTTCGGTAGTGGTTTTATGGTTATATGCAGACTTCCTTGCTGCATTCACTGCTGAATTTGCACCCAAATTTAACTTATGAATTAAAGTATTTTCTGCTTAGATGTTCTGCAATTGTGGAATATGATGGTTACCTTTTCATGTACCAAACAATTTTGAAGGTAAAATGCACANCCTGCCATTCAATTTTTCCTGCTACTTCAAGCGCAGCTCTTGGGAGTTCATAGCTGATATAAATTGTCTAAATGCATGCAATATCATCAAATGTTGTTGTCAGTTTGTGTCAGTATTGAAACGCTGCTCCTTGACTTANAACAGCCATAAACCTCATATTTTT | |||||||||
gi|268774950|gb|CN609528.1|CN609528 SUL01-043F-B04-029.b Sugarcane leaf whorl library Saccharum hybrid cultivar CoS 767 cDNA clo TACTCCCTCCGTCCCTAAAAA EST sequence (targeted fragment marked with yellow): CAGTGAAGAGTCAGCATTTAATGAGAATTTTGCAAAGATGCCTTGGCTTGCAATTCCTCAAGGTGACGAGAAGTGTGAGAAGCTGGCTCGTTACTTTGAGCTTGGGTCTCTTCCTACACTAGTTCTGATTGGCCCTGATGGGAAGACACTGAACAGCAATATTGCGTACATAATTGATGAGCATGGTTTTGAGGCATGGGAGGGCTTCCCCTTTAGTGCTGAGAAGCTGGAAATTCTTGCTGAGAAGGCAAAGGCTAAAGCTGCATCACAGACCTTGGAGTCCCTTCTTATCAGTGGTGATTTGGACTTTGTTATTCGGAAAAATGATGCAAAGACAAAGTTGTTTCTCCGGAAGCGAAAACGACAAACATTTAGGGACGGAGGGAGTATATCTCAGGTTCCTGTATCAGAACT | |||||||||
gi|36015821|gb|CA282945.1|CA282945 SCQGSD1048B09.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCQGSD1048B09 5', mRNA seque TACTCCCTCCGTCCCTAAAAA EST sequence (targeted fragment marked with yellow): GAGAGGTGTTCGGCTTTGGCTTCTTTACCTTCCGAGGACGGGGGAGCTTCAAATGAAGGCGGCATCAGGGCTTCTCTCCTGCCGCGATCGTGCTGTTTAATAATCGCGTAATCAATTTGCCGAGTCAACTCCAGTGGCCCCTGATTGCACCACAGGAGCCCACATGTCAGGGCGCGTTTCTTGCAGATTGGCCCCGCAATCTGTACCCTCTCATAATTGAGTCCTTCGGGCTTTGTGTGTTGTTGTAGACTTGTAGTGGCATTGGCAACACGTGAAAGCATTCAAAGGGAAGCTTCTTAAATGCCTTTTGCTGGATAGAGAATTGGCACGGGCACAGTAGCCGTCCTTTTCGCAACTAGTACTCCTTCCGTCTAACAAAAGGTGCAATTAAGGATGCGTGTCAGCCAAACTGACTCAAGTTTAACTAAATTTATAGTAAACAATATTAACATTTATGTCTCCAAATAAATTTATTATAAAAATATATTCTATAACTAATCTAATGATACTTATTTTGTATCATAAATATTAATATTTTTTTATATAAATTTAGTCAAAGTTCAAACTGTTTGACTTTTCGAAAAGCGAGAATTGCATGTTTTTATGGACGGATGGAGTANTTCTTTGCAGTTGGCTACTGACATCAAGCAGAAGATTTCATTGCTCCTTTTCTGGGATGAGAGCCAAGTGTCATACTATGGGTACTAATGTGGTGGTTTAGTTCCCCAACCCAAAACTTTTACATCTCCATCCTAATGGAATGGTTTTGGAAGACATTGCCTTAGAAGCATTTTANATTATTTGATTAAAAAAATTTATTATA | |||||||||
gi|268781594|gb|DN194407.1|DN194407 SUM01-008F-E11-083.b Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 TACTCCCTCCGTCCCTAAAAA EST sequence (targeted fragment marked with yellow): TGACAATTTTGGATGAGCTTCTGCCTATCTCCATTGAGATGGCGAAACGGGACTGCAGAGGAATATGGAACTTCACCAACCCTGGTGTCGTTAGCCACAATGAGATTCTAGAGATGTACAAGAAATACATCAATCCTGATTTCAAGTGGACCAACTTCACACTCGAAGAGCAGGCCAAGGTCATAGTCGCACCTAGAAGCAACAACGAGATGGACGCGTCGAAATTGAAGGCTGAGTTCCCTCAGCTGCTGTCCATCAAGGACTCTTTGATCAAGTATGTCTTTGAGCCAAACAGGAAGGTTCCTGTTAATTGAGGATTTAGGTCACGGGGATGTGGAGGTTATTTGTATTGGTTGTTATTGGACACTAAATTAGCTAATGTTGCATGGTGGTCCGTACTAGTTGTGTTCGATTCTTTTGGGACAATAGCAAGCATACCTTTTTCTCGTCGTTGTTATATACTCCTCTGTCCCTTAACATGTGTCTGTAGAAAACCATGTTTCCCTCACAAACACGCTTCTCGGGCGACACTTAAAAGGGGCGACACTTAAAAGGGACGGAGGGAGTACGCAACCTGTTTGTACAAACAGGTACATATTTAGATGTTCTATATAGTGGCTGATATGCCGAGACACTGTTATCGATGAACACTACGAAT | |||||||||